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Transcription Machinery - Cytophaga hutchinsonii
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E CHU_3136 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E CHU_3169 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E CHU_3168 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E CHU_0356 conserved hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta
D Sigma factors
E CHU_1785 rpoD; RNA polymerase sigma-70 factor K03086 rpoD; RNA polymerase primary sigma factor
E CHU_0346 rpoE; RNA polymerase, sigma-E factor; heat shock and oxidative stress K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E CHU_0543 RNA polymerase, ECF-type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E CHU_1195 rpoE; RNA polymerase sigma-24 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E CHU_2649 rpoE; RNA polymerase, sigma-E factor; heat shock and oxidative stress K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E CHU_2574 rpoE; RNA polymerase, sigma-E factor; heat shock and oxidative stress K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E CHU_3562 rpoE; RNA polymerase sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E CHU_0262 RNA polymerase sigma factor (possible RNA polymerase sigma-24 factor) K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E CHU_3177 rpoN; RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor
C Other transcription-related factors
D RNA polymerase-associated proteins
E CHU_3421 nusA; transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA
E CHU_2447 nusB; antitermination factor K03625 nusB; transcription antitermination protein NusB
E CHU_3174 nusG; transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
E CHU_1217 anti-sigma regulatory factor; Ser/Thr protein kinase K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
E CHU_1218 possible negative regulator of sigma-B K17762 rsbS; rsbT antagonist protein RsbS
E CHU_1219 positive regulator of sigma-B K17763 rsbR; rsbT co-antagonist protein RsbR
E CHU_2179 rsbU; sigma factor regulation protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E CHU_0447 probable hydrolase K19707 rsbQ; sigma-B regulation protein RsbQ
E CHU_1702 anti-anti-sigma regulatory factor K04749 rsbV; anti-sigma B factor antagonist
E CHU_0194 spoIIAA; anti-sigma F factor antagonist K04749 rsbV; anti-sigma B factor antagonist
E CHU_1913 spoIIA; anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) K04749 rsbV; anti-sigma B factor antagonist
E CHU_0193 conserved hypothetical protein (possible anti-sigma factor) K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Transcription elongation factors
E CHU_1631 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Transcription termination factor
E CHU_3603 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024