+E Transcription factors KO #

  Transcription Factors - Carboxydothermus hydrogenoformans

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D CHY_0078 conserved hypothetical protein K13653 K13653; AraC family transcriptional regulator C LysR family D CHY_1527 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D CHY_2398 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D CHY_2575 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon C DeoR family D CHY_2534 stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D CHY_0441 CBS domain protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator C LacI family C GntR family D CHY_0434 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex C TetR/AcrR family D CHY_1605 transcriptional regulator, TetR family K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein C Lrp/AsnC family C LuxR family C MarR family C MerR family D CHY_1706 transcriptional regulator, MerR family K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator C Fur family D CHY_2099 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CHY_0651 transcription regulator, Fur family K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D CHY_1135 transcriptional regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family D CHY_1273 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D CHY_1835 cooA-1; carbon monoxide oxidation system transcription regulator CooA-1 K21555 cooA; CRP/FNR family transcriptional regulator, carbon monoxide oxidation system transcription regulator C Rrf2 family D CHY_2200 rrf2 family protein K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor C ArsR family D CHY_1092 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D CHY_0859 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor C XRE family C PadR family C Other families D CHY_2371 birA; BirA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D CHY_1865 putative transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D CHY_1333 putative sigma-54-dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D CHY_0788 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D CHY_0619 molybdenum transport domain protein K02019 modE; molybdate transport system regulatory protein D CHY_0378 molybdate transport repressor ModE domain protein K02019 modE; molybdate transport system regulatory protein D CHY_0339 conserved hypothetical protein K01926 rex; redox-sensing transcriptional repressor D CHY_1789 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D CHY_0141 putative GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D CHY_1696 prophage LambdaCh01, transcriptional regulator, PBSX family K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family D CHY_0715 helix-turn-helix protein, CopG family K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI C Other families B Other transcription factors C BglG family C Others D CHY_0938 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D CHY_2622 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D CHY_0202 spoVT; stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D CHY_0010 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CHY_2344 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D CHY_1843 glpP; glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator D CHY_1981 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D CHY_0412 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D CHY_2351 ctsR; transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response D CHY_2091 sigma-54 dependent transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D CHY_1139 mtrB; transcription attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein) D CHY_1503 pyrR; pyrR bifunctional protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D CHY_2052 conserved hypothetical protein TIGR00244 K07738 nrdR; transcriptional repressor NrdR D CHY_2079 mraZ; mraZ protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0