+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Carboxydothermus hydrogenoformans

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D CHY_1444 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C CHY_0430 era; GTP-binding protein Era K03595 era; GTPase C CHY_0370 obg; spo0B-associated GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C CHY_1769 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA C CHY_1994 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB C CHY_2324 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D CHY_1531 rsuA; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D CHY_2616 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D CHY_1481 sun; sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D CHY_0418 conserved hypothetical protein TIGR00046 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D CHY_0008 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CHY_2078 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D CHY_0055 conserved hypothetical protein TIGR00096 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D CHY_1395 conserved hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D CHY_1984 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D CHY_2335 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D CHY_0058 conserved hypothetical protein TIGR00246 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D CHY_1437 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D CHY_1480 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D CHY_1984 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D CHY_1112 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D CHY_1938 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D CHY_1505 ribosomal large subunit pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D CHY_1119 ribosomal large subunit pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C CHY_0724 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C CHY_1431 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C CHY_1164 MiaB-like tRNA modifying enzyme YliG, TIGR01125 K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C CHY_0417 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C CHY_1444 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C CHY_0364 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] C CHY_0542 conserved hypothetical protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] C CHY_2337 conserved hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] B rRNA helicases C CHY_0229 ATP-dependent RNA helicase, DEAD box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C CHY_0430 era; GTP-binding protein Era K03595 era; GTPase C CHY_1477 GTP-binding protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C CHY_1919 GTP-binding protein K03977 engA; GTPase C CHY_0370 obg; spo0B-associated GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] C CHY_1427 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A C CHY_0112 GTP-binding protein K03665 hflX; GTPase B Other maturation factors C CHY_2561 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C CHY_2223 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C CHY_1765 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C CHY_1770 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP C CHY_2708 S4 domain protein K14761 rlbA; ribosome-associated protein C CHY_0391 iojap protein, homolog K09710 ybeB; ribosome-associated protein C CHY_0427 conserved hypothetical protein TIGR00043 K07042 ybeY; probable rRNA maturation factor C CHY_0156 yfiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor C CHY_0031 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C CHY_1454 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024