+F Repair protein KO #

  DNA Repair and Recombination Proteins - Colwellia psychrerythraea

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CPS_0155 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CPS_1380 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CPS_4288 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CPS_4148 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CPS_2193 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D CPS_4453 mutT; mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CPS_0155 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CPS_3353 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D CPS_1380 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CPS_4288 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CPS_4148 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CPS_2351 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E CPS_0212 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CPS_2193 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CPS_3173 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E CPS_4094 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E CPS_3466 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E CPS_4978 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E CPS_0920 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E CPS_2887 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E CPS_3270 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E CPS_0080 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CPS_2418 putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CPS_4978 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E CPS_3466 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CPS_4769 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CPS_4768 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CPS_0626 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CPS_4972 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CPS_2139 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CPS_4137 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E CPS_0323 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E CPS_3626 mutH; DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E CPS_2014 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E CPS_4244 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CPS_1090 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CPS_1570 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CPS_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CPS_0739 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E CPS_1720 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CPS_2303 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CPS_2255 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CPS_0780 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CPS_4955 exonuclase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CPS_3744 dnaX; DNA polymerase III, gamma/tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E CPS_3466 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CPS_0080 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CPS_2418 putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CPS_0930 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein E CPS_0137 single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein E CPS_0475 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CPS_2768 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E CPS_2769 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E CPS_2767 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E CPS_0188 putative helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E CPS_4134 recA; recA protein K03553 recA; recombination protein RecA E CPS_2116 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CPS_2117 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CPS_2115 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E CPS_4366 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E CPS_0416 priB; primosomal replication protein N K02686 priB; primosomal replication protein N E CPS_3758 putative primosomal replication protein N'' K04067 priC; primosomal replication protein N'' E CPS_2014 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E CPS_2848 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E CPS_2566 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E CPS_2849 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E CPS_4134 recA; recA protein K03553 recA; recombination protein RecA E CPS_1105 putative DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E CPS_0003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E CPS_4976 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CPS_4094 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CPS_4120 recO; recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) E CPS_3690 recR; recombination protein RecR K06187 recR; recombination protein RecR E CPS_3825 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E CPS_1204 rdgC; recombination associated protein RdgC K03554 rdgC; recombination associated protein RdgC E CPS_2116 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CPS_2117 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CPS_2115 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E CPS_1302 putative helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E CPS_2848 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E CPS_2566 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E CPS_2849 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CPS_2331 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CPS_0004 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CPS_1197 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F CPS_3781 hupB3; DNA-binding protein, HU family K03530 hupB; DNA-binding protein HU-beta F CPS_1873 hupB1; DNA-binding protein, HU family K03530 hupB; DNA-binding protein HU-beta F CPS_2063 hupB2; DNA-binding protein, HU family K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CPS_4094 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CPS_4120 recO; recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) F CPS_3690 recR; recombination protein RecR K06187 recR; recombination protein RecR F CPS_3466 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F CPS_0551 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F CPS_2994 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F CPS_2336 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F CPS_2014 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F CPS_4237 RecQ domain protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CPS_0083 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CPS_2945 putative DEAD/DEAH box helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CPS_0920 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F CPS_2887 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CPS_1040 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D CPS_2682 umuC2; umuC protein K03502 umuC; DNA polymerase V D CPS_1636 umuC1; umuC protein K03502 umuC; DNA polymerase V D CPS_2683 umuD2; umuD protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D CPS_1635 umuD1; umuD protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D CPS_4134 recA; recA protein K03553 recA; recombination protein RecA D CPS_0237 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D CPS_3825 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CPS_2273 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D CPS_0930 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CPS_0137 single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein D CPS_2669 recX; regulatory protein recX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D CPS_0300 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D CPS_2454 helD; helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D CPS_3886 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D CPS_2272 dinG; ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D CPS_2941 putative DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D CPS_4453 mutT; mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CPS_2328 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CPS_2327 nrdB; ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024