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Transfer RNA Biogenesis - Corynebacterium ramonii FRC0011
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D CulFRC11_1587 Guanyl-specific ribonuclease Sa3 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D CulFRC11_0187 gluQ; Glutamyl-Q tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CulFRC11_0962 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CulFRC11_1366 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CulFRC11_1475 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CulFRC11_2150 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CulFRC11_0725 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CulFRC11_0887 argS; Arginyl-tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CulFRC11_2023 lysS1; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CulFRC11_1868 lysS; Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CulFRC11_1233 aspS; Aspartyl-tRNA synthase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D CulFRC11_1230 alaS; Alanine--tRNA ligase (Alanyl-tRNA synthetase) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CulFRC11_1594 glyS; Glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CulFRC11_1265 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CulFRC11_2078 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CulFRC11_1848 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CulFRC11_1669 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CulFRC11_1241 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CulFRC11_1024 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CulFRC11_1025 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CulFRC11_1035 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CulFRC11_0513 trpS; Tryptophanyl-tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D CulFRC11_1298 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D CulFRC11_1121 pimT; SAM-dependent methyltransferase involved in tRNA-Met maturation K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D CulFRC11_2048 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D CulFRC11_0445 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CulFRC11_1355 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D CulFRC11_0919 nifS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D CulFRC11_0896 ywlC; tRNA threonylcarbamoyladenosine biosynthesis protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CulFRC11_1327 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D CulFRC11_0682 cysQ; 3'-phosphoadenosine 5'-phosphate phosphatase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D CulFRC11_2209 rnpA; Ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D CulFRC11_1732 rph; Ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D CulFRC11_1282 Ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D CulFRC11_1587 Guanyl-specific ribonuclease Sa3 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D CulFRC11_2150 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CulFRC11_1366 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D CulFRC11_1035 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CulFRC11_0513 trpS; Tryptophanyl-tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CulFRC11_1265 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CulFRC11_1475 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CulFRC11_2023 lysS1; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CulFRC11_1868 lysS; Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CulFRC11_1230 alaS; Alanine--tRNA ligase (Alanyl-tRNA synthetase) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CulFRC11_1669 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CulFRC11_0725 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CulFRC11_2078 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CulFRC11_1233 aspS; Aspartyl-tRNA synthase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CulFRC11_1848 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CulFRC11_0187 gluQ; Glutamyl-Q tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CulFRC11_0962 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CulFRC11_0887 argS; Arginyl-tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CulFRC11_1024 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CulFRC11_1025 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CulFRC11_1241 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
C Trans-editing factors
D CulFRC11_1298 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D CulFRC11_0582 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D CulFRC11_0183 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
C Methylthiotransferases
D CulFRC11_1332 miaB; tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D CulFRC11_2048 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D CulFRC11_1414 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D CulFRC11_0495 spoU1; tRNA cytosine34-2'-O-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D CulFRC11_1023 tsnR; rRNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D CulFRC11_0445 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CulFRC11_1355 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D CulFRC11_2115 rluC; Pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
C Thiolation factors
D CulFRC11_0921 mnmA; tRNA-specific 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CulFRC11_0919 nifS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CulFRC11_1806 Glycine cleavage T protein K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D CulFRC11_1327 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CulFRC11_0186 tgt; Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D CulFRC11_1885 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D CulFRC11_0465 Hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D CulFRC11_0896 ywlC; tRNA threonylcarbamoyladenosine biosynthesis protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CulFRC11_0467 gcp; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D CulFRC11_0462 Hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
B tRNA degradation factors
C CulFRC11_1351 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024