+E Ribosome biogenesis KO
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Ribosome Biogenesis - Synechococcus sp. JA-2-3B'a(2-13)
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D CYB_0755 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C CYB_1268 era; GTP-binding protein Era K03595 era; GTPase
C CYB_0068 GTP-binding protein K03595 era; GTPase
C CYB_2352 GTP-binding protein, GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C CYB_2245 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C CYB_2099 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C CYB_1220 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D CYB_0986 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CYB_1963 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D CYB_0695 conserved hypothetical protein TIGR00046 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CYB_1166 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CYB_1327 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CYB_2500 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CYB_1073 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D CYB_2829 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CYB_2023 hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D CYB_1027 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CYB_1073 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D CYB_0500 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D CYB_1113 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CYB_0078 RNA pseudouridine synthase family protein K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C CYB_1212 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C CYB_0323 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C CYB_2037 MiaB-like tRNA modifying enzyme YliG, TIGR01125 K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C CYB_0696 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C CYB_0755 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C CYB_1823 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
C CYB_1750 conserved hypothetical protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C CYB_2828 conserved hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
B GTPases
C CYB_1268 era; GTP-binding protein Era K03595 era; GTPase
C CYB_0068 GTP-binding protein K03595 era; GTPase
C CYB_2937 conserved hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C CYB_1263 engA; GTP-binding protein EngA K03977 engA; GTPase
C CYB_2352 GTP-binding protein, GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-]
C CYB_0642 GTPase family protein K14540 rbgA; ribosome biogenesis GTPase A
C CYB_0382 GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C CYB_1030 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C CYB_1543 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C CYB_0200 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C CYB_2246 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C CYB_1892 S4 domain protein K14761 rlbA; ribosome-associated protein
C CYB_0062 iojap-like protein K09710 ybeB; ribosome-associated protein
C CYB_1900 conserved hypothetical protein TIGR00043 K07042 ybeY; probable rRNA maturation factor
C CYB_2924 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C CYB_2238 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024