+F Repair protein KO #

  DNA Repair and Recombination Proteins - Synechococcus sp. JA-2-3B'a(2-13)

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CYB_0202 phrB-1; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CYB_2817 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CYB_0752 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CYB_0991 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E CYB_2151 base excision DNA repair protein, HhH-GPD family K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CYB_0202 phrB-1; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D CYB_1949 deoxyribodipyrimidine photolyase family protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E CYB_2440 putative uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CYB_2404 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CYB_2817 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CYB_0752 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CYB_1244 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CYB_0991 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E CYB_2151 base excision DNA repair protein, HhH-GPD family K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CYB_0231 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E CYB_1106 recJ-2; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CYB_0828 recJ-1; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E CYB_1335 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E CYB_1196 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E CYB_0807 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E CYB_1251 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E CYB_2100 helicase, UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CYB_1368 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CYB_1335 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CYB_2436 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CYB_2437 rpoC1; DNA-directed RNA polymerase, gamma subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CYB_2438 rpoC2; DNA-directed RNA polymerase, beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CYB_1580 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CYB_2308 putative DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CYB_1207 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CYB_2731 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E CYB_2373 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E CYB_2276 putative DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E CYB_0088 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CYB_0089 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CYB_1183 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CYB_1539 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CYB_2699 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CYB_1099 putative DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CYB_1304 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E CYB_1335 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CYB_2100 helicase, UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CYB_1368 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CYB_0117 putative single-strand binding protein K03111 ssb; single-strand DNA-binding protein E CYB_1663 single-strand binding family protein K03111 ssb; single-strand DNA-binding protein E CYB_2715 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CYB_1961 recA; recA protein K03553 recA; recombination protein RecA E CYB_0546 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CYB_0432 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CYB_0493 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E CYB_2227 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E CYB_1107 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E CYB_1970 RecF/RecN/SMC N terminal domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E CYB_1971 Ser/Thr protein phosphatase family protein K03547 sbcD; DNA repair protein SbcD/Mre11 E CYB_2775 sbcD; nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E CYB_1961 recA; recA protein K03553 recA; recombination protein RecA E CYB_1512 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E CYB_2719 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E CYB_2808 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CYB_1106 recJ-2; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CYB_0828 recJ-1; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CYB_2559 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E CYB_2895 recR; recombination protein RecR K06187 recR; recombination protein RecR E CYB_0776 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E CYB_0546 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CYB_0432 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CYB_0493 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E CYB_0835 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E CYB_1107 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E CYB_1970 RecF/RecN/SMC N terminal domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E CYB_1971 Ser/Thr protein phosphatase family protein K03547 sbcD; DNA repair protein SbcD/Mre11 E CYB_2775 sbcD; nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CYB_1609 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CYB_0008 type II DNA topoisomerase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CYB_0322 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CYB_2358 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F CYB_0896 hup-2; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CYB_1106 recJ-2; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CYB_0828 recJ-1; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CYB_2559 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F CYB_2895 recR; recombination protein RecR K06187 recR; recombination protein RecR F CYB_1335 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F CYB_0804 hup-1; DNA-binding protein HU K05788 ihfB; integration host factor subunit beta E Supressor F CYB_0669 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CYB_1196 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F CYB_0807 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D CYB_1961 recA; recA protein K03553 recA; recombination protein RecA D CYB_0776 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CYB_0117 putative single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CYB_1663 single-strand binding family protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D CYB_2646 conserved hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024