+E Transcription factors KO #

  Transcription Factors - Cyanothece sp. PCC 7425

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D Cyan7425_4269 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D Cyan7425_2411 transcriptional regulator, AraC family K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors C LysR family D Cyan7425_3855 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator C DeoR family D Cyan7425_3451 putative transcriptional regulator K09012 sufR; DeoR family transcriptional regulator, suf operon transcriptional repressor C LacI family C GntR family D Cyan7425_1082 transcriptional regulator, GntR family K07978 plmA; GntR family transcriptional regulator C TetR/AcrR family D Cyan7425_1169 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator D Cyan7425_4680 transcriptional regulator, TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D Cyan7425_1903 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Cyan7425_1689 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Cyan7425_1329 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon C Lrp/AsnC family D Cyan7425_3068 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family C MarR family C MerR family D Cyan7425_2718 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C Fur family D Cyan7425_1789 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Cyan7425_1917 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Cyan7425_4383 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Cyan7425_2524 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Cyan7425_1597 ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family C CRP/FNR family D Cyan7425_1533 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Cyan7425_0841 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Cyan7425_1179 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Cyan7425_4893 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Cyan7425_2663 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Cyan7425_0755 transcriptional regulator, Crp/Fnr family K21561 ntcA; CRP/FNR family transcriptional regulator, global nitrogen regulator D Cyan7425_2574 transcriptional regulator, Crp/Fnr family K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator C Rrf2 family D Cyan7425_4135 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor C ArsR family D Cyan7425_0476 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Cyan7425_0671 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Cyan7425_4462 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor C XRE family C PadR family D Cyan7425_0258 transcriptional regulator, PadR-like family K26743 pex; PadR family transcriptional regulator, circadian period extender D Cyan7425_2857 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator C Other families D Cyan7425_3253 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Cyan7425_0455 putative transcription regulator with HTH domain protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Cyan7425_1808 plasmid maintenance system antidote protein, XRE family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Cyan7425_1746 conserved hypothetical protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Cyan7425_0948 transcriptional regulator, CdaR K02647 cdaR; carbohydrate diacid regulator D Cyan7425_1799 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator D Cyan7425_3774 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator D Cyan7425_4414 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator D Cyan7425_4838 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator D Cyan7425_3037 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator D Cyan7425_1496 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator D Cyan7425_5453 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator D Cyan7425_0305 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator D Cyan7425_3923 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator D Cyan7425_2649 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator D Cyan7425_5459 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator D Cyan7425_2965 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D Cyan7425_3714 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Cyan7425_5423 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Cyan7425_0075 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Cyan7425_5123 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Cyan7425_1468 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Cyan7425_4029 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0