+F Repair protein KO #

  DNA Repair and Recombination Proteins - Crocosphaera subtropica

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D cce_2428 phrA1; DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E cce_3596 mutT; mutator protein MutT K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E cce_1268 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D cce_2066 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cce_4624 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cce_0096 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cce_0813 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cce_0384 deoxyuridine 5'triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D cce_2428 phrA1; DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D cce_2752 putative Deoxyribodipyrimidine photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E cce_1427 putative Uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E cce_3010 putative DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E cce_3596 mutT; mutator protein MutT K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E cce_4324 fpg; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E cce_1268 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E cce_3992 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E cce_4569 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E cce_0484 recJ1; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E cce_2425 recJ2; single-strand-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E cce_1818 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E cce_3691 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E cce_2046 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E cce_1434 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E cce_3987 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E cce_2276 putative UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E cce_0635 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E cce_1818 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F cce_3488 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F cce_3838 rpoC1; RNA polymerase gamma-subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F cce_3487 rpoC2; RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F cce_4039 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F cce_0231 putative RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] F cce_0487 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F cce_3710 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E cce_2152 mutS1; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E cce_1888 mutS2; DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E cce_0299 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E cce_5035 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E cce_5034 xseB; putative exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E cce_4723 dnaE-c; DNA polymerase III alpha subunit, C-terminal intein/extein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E cce_4077 dnaE-n; DNA polymerase III alpha subunit, N-terminal extein/intein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E cce_1864 dnaN1; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E cce_4866 dnaN2; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E cce_1671 putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E cce_4946 putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E cce_4382 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E cce_2531 dnaX; DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E cce_4945 DNA polymerase III gamma subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E cce_1818 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E cce_3987 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E cce_2276 putative UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E cce_0635 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E cce_2001 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E cce_2200 ycf41; putative YCF41 K03111 ssb; single-strand DNA-binding protein E cce_2327 N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72] E cce_1061 probable cytosine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E cce_0014 putative site-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E cce_4639 recA; recombination protein K03553 recA; recombination protein RecA E cce_1208 ruvA; Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E cce_0503 ruvB; Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E cce_0063 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E cce_5226 putative RuvC-like Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E cce_5212 putative RuvC-like Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E cce_2529 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E cce_0362 putative exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E cce_4575 probable exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E cce_4639 recA; recombination protein K03553 recA; recombination protein RecA E cce_4001 DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms E cce_2613 recF; DNA repair and genetic recombination protein K03629 recF; DNA replication and repair protein RecF E cce_0327 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E cce_0484 recJ1; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E cce_2425 recJ2; single-strand-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E cce_4546 recO; putative recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) E cce_2826 recR; recombination protein K06187 recR; recombination protein RecR E cce_2438 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E cce_1208 ruvA; Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E cce_0503 ruvB; Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E cce_0063 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E cce_5226 putative RuvC-like Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E cce_5212 putative RuvC-like Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E cce_0348 DUF48-containing protein K15342 cas1; CRISP-associated protein Cas1 E cce_1198 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E cce_0362 putative exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E cce_4575 probable exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F cce_4401 gyrA1; DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F cce_4541 gyrA2; DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F cce_0758 gyrB; DNA gyrase B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F cce_1235 topA1; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F cce_4808 topA2; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F cce_1277 putative histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F cce_1745 DNA binding protein HU K03530 hupB; DNA-binding protein HU-beta F cce_5069 DNA binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F cce_0484 recJ1; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F cce_2425 recJ2; single-strand-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F cce_4546 recO; putative recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) F cce_2826 recR; recombination protein K06187 recR; recombination protein RecR F cce_1818 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F cce_1788 ATP-requiring DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F cce_2137 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F cce_3691 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F cce_2046 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D cce_4639 recA; recombination protein K03553 recA; recombination protein RecA D cce_1899 lexA; SOS function regulatory protein K01356 lexA; repressor LexA [EC:3.4.21.88] D cce_5074 LexA-like protein K01356 lexA; repressor LexA [EC:3.4.21.88] D cce_2438 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D cce_2001 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D cce_2200 ycf41; putative YCF41 K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D cce_1600 putative Rad3-related DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D cce_2066 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cce_4624 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cce_0096 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cce_0813 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cce_0384 deoxyuridine 5'triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D cce_1354 nrdA; ribonucleoside-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D cce_1640 nrdB1; ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D cce_4877 nrdB2; ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024