+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Escherichia coli K-12 BW2952

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AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors D Cap binding complex C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) D Pre-mRNA cleavage factor IIm (CFIIm) D Cleavage and polyadenylation specificity factor (CPSF) complex D Cleavage stimulation factor (CSTF) complex D U7-dependent histone pre-mRNA processing factors D DRB sensitivity inducing factor (DSIF) complex D N6-methyltransferase complex D Poly(A) addition factors D Negative regulators of mRNA 3' end processing C Other processing factors B mRNA surveillance and transport factors C Transport factors D EJC complex D TREX complex D TREX-2 complex D Nuclear pore complex D Ran-mediated transport factors D eIF4F and regulatory proteins D APOBEC1-ACF complex D Other transport factors C Surveillance factors D Surveillance complex D Protein phosphatase 2A D Other surveillance factors C Factors involved in mRNA localization D Cargo complex D Factors that have mRNA localization signals D Trans-acting binding proteins D Other mRNA localization factors C mRNA cycle factors D Common to processing body (P body) and stress granule D P-body specific factors D Stress granule specific factors B mRNA degradation factors C 5'-3' decay D Decapping complex D Lsm complex D 5' exonucleases D Other 5'-3' decay factors C 3'-5' decay D Core exosome factors D Exosome cofactors D TRAMP complex D Ski complex D Ccr4-NOT complex D Pan complex D Other 3'-5' decay factors C Other degradation factors D RNases # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases E BWG_0932 rne; fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12] E BWG_2947 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] E BWG_2331 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3] E BWG_3891 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1] E BWG_3877 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D Helicases E BWG_3463 rhlB; ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] E BWG_0650 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] E BWG_2866 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] E BWG_3500 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Other RNA degradosome components E BWG_2514 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E BWG_2868 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] E BWG_3465 rho; transcription termination factor K03628 rho; transcription termination factor Rho E BWG_3585 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E BWG_0013 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK E BWG_3856 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] E BWG_3884 hfq; HF-I, host factor for RNA phage Q beta replication K03666 hfq; host factor-I protein D Others E BWG_2265 ppk; polyphosphate kinase, component of RNA degradosome K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] E BWG_0136 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] E BWG_2565 rppH; nucleotide hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] E BWG_2432 csrA; pleiotropic regulatory protein for carbon source metabolism K03563 csrA; carbon storage regulator E BWG_2952 csrD; conserved inner membrane protein K18765 csrD; RNase E specificity factor CsrD E BWG_3598 rraA; ribonuclease E (RNase E) inhibitor protein K02553 rraA; regulator of ribonuclease activity A E BWG_3961 rraB; conserved protein K09893 rraB; regulator of ribonuclease activity B E BWG_2907 yhbJ; predicted protein with nucleoside triphosphate hydrolase domain K06958 rapZ; RNase adapter protein RapZ E BWG_1240 hrpA; ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] E BWG_0141 hrpB; predicted ATP-dependent helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] D Bacterial Small RNA Regulators E BWG_4230 dsrA; Regulatory sRNA enhances translation of RpoS; component of acid resistance regulatory circuit; also antagonist of H-NS function by decreasing H-NS levels K18502 dsrA; small regulatory RNA DsrA E BWG_4212 sroB; Novel sRNA, function unknown K18503 chiX; small regulatory RNA ChiX E BWG_4254 ryhA; Novel sRNA, function unknown K18504 arcZ; small regulatory RNA ArcZ E BWG_4238 glmY; sRNA activator of glmS mRNA K15841 glmY; small regulatory RNA GlmY E BWG_4259 glmZ; sRNA activator of glmS mRNA, Hfq-dependent K18505 glmZ; small regulatory RNA GlmZ E BWG_4209 sgrS; sRNA that destabilzes ptsG mRNA; regulated by sgrR K18506 sgrS; small regulatory RNA SgrS E BWG_4255 ryhB; Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target K18507 ryhB; small regulatory RNA RyhB E BWG_4214 rybB; sRNA effector of ompC and ompW mRNA instability; requires Hfq K18508 rybB; small regulatory RNA RybB E BWG_4222 rydC; sRNA regulator of yejABEF K18509 rydC; small regulatory RNA RydC E BWG_4242 micA; sRNA effector of ompA mRNA instability in stationary phase; requires Hfq K18511 micA; small regulatory RNA MicA E BWG_4221 micC; MicC sRNA regulator of OmpC translation K18512 micC; small regulatory RNA MicC E BWG_4236 micF; Regulatory antisense sRNA affecting ompF expression; member of soxRS regulon K18513 micF; small regulatory RNA MicF E BWG_4243 csrB; CsrA-binding sRNA, antagonizing CsrA regulation; blocks the CsrA binding of glgC mRNA K18515 csrB; small regulatory RNA CsrB E BWG_4261 csrC; CsrC sRNA sequesters CsrA, a carbon flux regulator; also affects biofilms and motilty K18516 csrC; small regulatory RNA CsrC E BWG_4224 dicF; DicF antisense sRNA, inhibits ftsZ, Qin prophage K18517 dicF; small regulatory RNA DicF E BWG_4226 rprA; Positive regulatory sRNA for RpoS translation; non-essential gene K18518 rprA; small regulatory RNA RprA E BWG_4231 rseX; sRNA regulating ompA and ompC translation, with Hfq K18519 rseX; small regulatory RNA RseX E BWG_4235 ryeE; Novel sRNA, function unknown, prophage remnant PR-X hybrid K18520 cyaR; small regulatory RNA CyaR E BWG_4244 gcvB; GcvB sRNA gene divergent from gcvA K18521 gcvB; small regulatory RNA GcvB E BWG_4245 omrA; sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq K18522 omrA; small regulatory RNA OmrA E BWG_4246 omrB; sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq K18523 omrB; small regulatory RNA OmrB E BWG_4256 gadY; sRNA regulator of gadAB transcriptional activator GadX mRNA K18525 gadY; small regulatory RNA GadY E BWG_4258 istR; sRNAs IstR-1 and IstR-2, tisB regulators K18526 istR; sRNA antisense regulator of TisB protein E BWG_4260 spf; Spot 42 sRNA; antisense regulator of galK translation K18527 spf; small regulatory RNA Spot 42 E BWG_4262 oxyS; OxyS sRNA activates genes that detoxify oxidative damage K18528 oxyS; small regulatory RNA OxyS B Archeal mRNA degradation factors C Exosome components D Core exosome D Cofactors D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024