+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Escherichia coli O157:H7 EDL933 (EHEC)

% ! AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors D Cap binding complex C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) D Pre-mRNA cleavage factor IIm (CFIIm) D Cleavage and polyadenylation specificity factor (CPSF) complex D Cleavage stimulation factor (CSTF) complex D U7-dependent histone pre-mRNA processing factors D DRB sensitivity inducing factor (DSIF) complex D N6-methyltransferase complex D Poly(A) addition factors D Negative regulators of mRNA 3' end processing C Other processing factors B mRNA surveillance and transport factors C Transport factors D EJC complex D TREX complex D TREX-2 complex D Nuclear pore complex D Ran-mediated transport factors D eIF4F and regulatory proteins D APOBEC1-ACF complex D Other transport factors C Surveillance factors D Surveillance complex D Protein phosphatase 2A D Other surveillance factors C Factors involved in mRNA localization D Cargo complex D Factors that have mRNA localization signals D Trans-acting binding proteins D Other mRNA localization factors C mRNA cycle factors D Common to processing body (P body) and stress granule D P-body specific factors D Stress granule specific factors B mRNA degradation factors C 5'-3' decay D Decapping complex D Lsm complex D 5' exonucleases D Other 5'-3' decay factors C 3'-5' decay D Core exosome factors D Exosome cofactors D TRAMP complex D Ski complex D Ccr4-NOT complex D Pan complex D Other 3'-5' decay factors C Other degradation factors D RNases # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases E Z1722 rne; RNase E, membrane attachment, mRNA turnover, maturation 5S RNA K08300 rne; ribonuclease E [EC:3.1.26.12] E Z4605 cafA; bundles of cytoplasmic filaments K08301 rng; ribonuclease G [EC:3.1.26.-] E Z3848 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3] E Z5786 vacB; putative enzyme K12573 rnr; ribonuclease R [EC:3.1.13.1] E Z5768 yjeR; orf, hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-] D Helicases E Z5290 rhlB; putative ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] E Z1017 rhlE; putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] E Z4523 deaD; inducible ATP-independent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] E Z5343 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] E Z4801 putative ATP-dependent DNA helicase (together with adjacent 3 orfs) K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] E Z4803 putative ATP-dependent DNA helicase (together with adjacent 3 orfs) K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Other RNA degradosome components E Z4094 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E Z4525 pnp; polynucleotide phosphorylase; cytidylate kinase activity K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] E Z5293 rho; transcription termination factor Rho; polarity suppressor K03628 rho; transcription termination factor Rho E Z5460 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E Z0014 dnaK; chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins K04043 dnaK; molecular chaperone DnaK E Z5748 mopA; GroEL, chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7] E Z5779 hfq; host factor I for bacteriophage Q beta replication, a growth-related protein K03666 hfq; host factor-I protein D Others E Z3764 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] E Z0154 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] E Z4147 ygdP; putative invasion protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] E Z3998 csrA; carbon storage regulator; controls glycogen synthesis, gluconeogenesis, cell size and surface properties K03563 csrA; carbon storage regulator E Z4611 yhdA; orf, hypothetical protein K18765 csrD; RNase E specificity factor CsrD E Z5476 menG; menaquinone biosynthesis, unknown K02553 rraA; regulator of ribonuclease activity A E Z5867 yjgD; orf, hypothetical protein K09893 rraB; regulator of ribonuclease activity B E Z4568 yhbJ; orf, hypothetical protein K06958 rapZ; RNase adapter protein RapZ E Z2313 hrpA; helicase, ATP-dependent K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] E Z0159 hrpB; helicase, ATP-dependent K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] D Bacterial Small RNA Regulators E Z3044 dsrA; anti-sense RNA silencer of rcsA gene K18502 dsrA; small regulatory RNA DsrA E Z6077 putative RNA identical to DicF encoded within cryptic prophage CP-933P K18517 dicF; small regulatory RNA DicF E Z1327 RNA similar to DicF encoded within cryptic prophage CP-933M K18517 dicF; small regulatory RNA DicF E Z5399 spf; spot 42 RNA, inhibition of DNA synthesis K18527 spf; small regulatory RNA Spot 42 B Archeal mRNA degradation factors C Exosome components D Core exosome D Cofactors D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024