+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Escherichia coli O157:H7 EDL933 (EHEC)
%
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E Z1722 rne; RNase E, membrane attachment, mRNA turnover, maturation 5S RNA K08300 rne; ribonuclease E [EC:3.1.26.12]
E Z4605 cafA; bundles of cytoplasmic filaments K08301 rng; ribonuclease G [EC:3.1.26.-]
E Z3848 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3]
E Z5786 vacB; putative enzyme K12573 rnr; ribonuclease R [EC:3.1.13.1]
E Z5768 yjeR; orf, hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E Z5290 rhlB; putative ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
E Z1017 rhlE; putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E Z4523 deaD; inducible ATP-independent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E Z5343 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
E Z4801 putative ATP-dependent DNA helicase (together with adjacent 3 orfs) K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
E Z4803 putative ATP-dependent DNA helicase (together with adjacent 3 orfs) K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E Z4094 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E Z4525 pnp; polynucleotide phosphorylase; cytidylate kinase activity K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E Z5293 rho; transcription termination factor Rho; polarity suppressor K03628 rho; transcription termination factor Rho
E Z5460 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E Z0014 dnaK; chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins K04043 dnaK; molecular chaperone DnaK
E Z5748 mopA; GroEL, chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E Z5779 hfq; host factor I for bacteriophage Q beta replication, a growth-related protein K03666 hfq; host factor-I protein
D Others
E Z3764 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
E Z0154 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
E Z4147 ygdP; putative invasion protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
E Z3998 csrA; carbon storage regulator; controls glycogen synthesis, gluconeogenesis, cell size and surface properties K03563 csrA; carbon storage regulator
E Z4611 yhdA; orf, hypothetical protein K18765 csrD; RNase E specificity factor CsrD
E Z5476 menG; menaquinone biosynthesis, unknown K02553 rraA; regulator of ribonuclease activity A
E Z5867 yjgD; orf, hypothetical protein K09893 rraB; regulator of ribonuclease activity B
E Z4568 yhbJ; orf, hypothetical protein K06958 rapZ; RNase adapter protein RapZ
E Z2313 hrpA; helicase, ATP-dependent K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
E Z0159 hrpB; helicase, ATP-dependent K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D Bacterial Small RNA Regulators
E Z3044 dsrA; anti-sense RNA silencer of rcsA gene K18502 dsrA; small regulatory RNA DsrA
E Z6077 putative RNA identical to DicF encoded within cryptic prophage CP-933P K18517 dicF; small regulatory RNA DicF
E Z1327 RNA similar to DicF encoded within cryptic prophage CP-933M K18517 dicF; small regulatory RNA DicF
E Z5399 spf; spot 42 RNA, inhibition of DNA synthesis K18527 spf; small regulatory RNA Spot 42
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024