+F	Repair protein	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; DNA Repair and Recombination Proteins - Escherichia coli O18:K1:H7 UTI89 (UPEC)</h2>
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A<b>Eukaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      UTI89_C1606 ogt; O-6-alkylguanine-DNA/cysteine-protein methyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
D      UTI89_C0706 phrB; deoxyribodipyrimidine photolyase	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 
C    BER (base exicision repair)
D      DNA glycosylases
E        UTI89_C2902 ung; uracil-DNA-glycosylase	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        UTI89_C3351 mutY; A/G-specific adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] 
E        UTI89_C1823 nth; endonuclease III; specific for apurinic and/or apyrimidinic sites	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
D      Long Patch-BER factors
E        DNA polymerase delta complex
E        DNA polymerase epsilon complex
D      Short Patch-BER factors
D      Other BER factors
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        XPC-HR23B-CETN2 complex
E        Cul4-DDB2 complex
E        NER4 complex
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase II complex
E        Cul4-CSA complex
E        Other TCR factor
D      TFIIH complex
D      RPA (replication factor A)
D      Other NER factors
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
D      MutL homologs
D      DNA polymerase delta complex
D      RPA (replication factor A)
D      RFC (replication factor C)
D      Other MMR factors
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      MRN(MRX) complex
D      BRCA1-core complex
D      BRCA1-A complex
D      BRCA1-B complex
D      BRCA1-C complex
D      BRCA complex
D      RecA family proteins
D      Rad52 family proteins
D      Rad54 family proteins
D      RecQ family DNA helicases
D      Bloom's syndrome complex (BTR)
D      RPA (replication factor A)
D      Protein phosphatase 4
D      AP-5 complex
D      SMC5-SMC6 complex
D      Other HR factors
C    NHEJ (non-homologous end-joining)
D      DNA-PK complex
D      MRX complex
D      DNA Ligase 4 complex
D      X-family DNA polymerases
D      Other NHEJ factors
C    FA (Fanconi anemia) pathway
D      FA core complex
D      FA core complex binding factors
D      Bloom's syndrome complex (BTR)
D      FANCD2-I complex
D      Downstream FA components
D      Other FA pathway factors
C    Other DSBR factors
D      Protein phosphatase 6
D      Ubiquitin ligases
D      Others
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
C    B-family DNA polymerases
C    A-family DNA polymerase
C    Rad6 epistasis group
C    Other TLS factors
B  Check point factors
C    Rad9-Hus1-Rad1 complex
C    HRAD17(Rad24)-RFC complex
C    Rad17-Mec3-Ddc1 complex
C    FPC (fork protection complex)
C    Triple T complex
C    BAG6-UBL4A-GET4 complex
C    Other check point factors
B  Other factors with a suspected DNA repair function
C    DNA polymerases
C    Nucleases
C    Helicases
C    PSO4 complex
C    Modulation of nucleotide pools
D      UTI89_C0108 mutT; mutator MutT protein	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      UTI89_C4184 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase	K01520 dut; dUTP diphosphatase [EC:3.6.1.23] 
#
A<b>Prokaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      UTI89_C1606 ogt; O-6-alkylguanine-DNA/cysteine-protein methyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
D      UTI89_C2493 ada; Ada transcriptional dual regulator / O-6-methylguanine-DNA methyltransferase	K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] 
D      UTI89_C0706 phrB; deoxyribodipyrimidine photolyase	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 
D      UTI89_C2492 alkB; AlkB repair system protein for alkylated DNA and RNA	K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] 
C    BER (base exicision repair)
D      DNA glycosylases
E        UTI89_C2902 ung; uracil-DNA-glycosylase	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        UTI89_C3506 ygjF; G/U mismatch-specific DNA glycosylase	K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] 
E        UTI89_C2344 alkA; 3-methyl-adenine DNA glycosylase II	K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] 
E        UTI89_C3351 mutY; A/G-specific adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] 
E        UTI89_C4089 tag; DNA-3-methyladenine glycosylase I	K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] 
E        UTI89_C4178 mutM; formamidopyrimidine DNA glycosylase	K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] 
E        UTI89_C0712 nei; endonuclease VIII	K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] 
E        UTI89_C1823 nth; endonuclease III; specific for apurinic and/or apyrimidinic sites	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
E        UTI89_C1945 xthA; exodeoxyribonuclease III	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] 
E        UTI89_C2434 nfo; endonuclease IV	K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] 
E        UTI89_C3821 nfi; endonuclease V (deoxyinosine 3'endoduclease)	K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] 
D      RecJ
E        UTI89_C3277 recJ; single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
D      DNA ligase
E        UTI89_C2743 lig; DNA ligase	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
E        UTI89_C4191 yicF; hypothetical DNA ligase-like protein YicF	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      DNA polymerase I
E        UTI89_C4452 polA; DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7] 
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        UTI89_C4644 excision nuclease subunit A	K03701 uvrA; excinuclease ABC subunit A 
E        UTI89_C0777 uvrB; excision nuclease subunit B	K03702 uvrB; excinuclease ABC subunit B 
E        UTI89_C2114 uvrC; excinuclease ABC subunit C	K03703 uvrC; excinuclease ABC subunit C 
E        UTI89_C1935 ydjQ; hypothetical protein YdjQ	K05984 cho; excinuclease Cho [EC:3.1.25.-] 
E        UTI89_C4376 uvrD; DNA helicase II	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        UTI89_C0288 hypothetical protein	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        UTI89_C4452 polA; DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7] 
E        UTI89_C2743 lig; DNA ligase	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
E        UTI89_C4191 yicF; hypothetical DNA ligase-like protein YicF	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase complex (RNAP)
F          UTI89_C3832 rpoB; RNA polymerase beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
F          UTI89_C3831 rpoC; RNA polymerase, beta prime subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
F          UTI89_C3740 rpoA; RNA polymerase, alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
F          UTI89_C4194 rpoZ; RNA polymerase, omega subunit	K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] 
E        TRCF (transcription-repair coupling factor)
F          UTI89_C1242 mfd; transcription-repair coupling factor; mutation frequency decline	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] 
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
E        UTI89_C3098 mutS; DNA mismatch repair protein MutS	K03555 mutS; DNA mismatch repair protein MutS 
D      Molecular matchmaker
E        UTI89_C4770 mutL; MutL, enzyme in methyl-directed mismatch repair	K03572 mutL; DNA mismatch repair protein MutL 
D      Strand discrimination factor
E        UTI89_C3234 mutH; DNA mismatch repair protein MutH	K03573 mutH; DNA mismatch repair protein MutH 
D      DNA exonucleases
E        UTI89_C2285 sbcB; exodeoxyribonuclease I	K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] 
E        UTI89_C2827 xseA; exodeoxyribonuclease VII large subunit	K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] 
E        UTI89_C0445 xseB; exonuclease VII, small subunit	K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] 
E        UTI89_C2046 exoX; exodeoxyribonuclease X	K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] 
D      DNA polymerase III holoenzyme
E        UTI89_C0199 dnaE; DNA polymerase III alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] 
E        UTI89_C4251 dnaN; DNA polymerase III, beta-subunit	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] 
E        UTI89_C4865 holC; DNA polymerase III, chi subunit	K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] 
E        UTI89_C0643 holA; DNA polymerase III, delta subunit	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] 
E        UTI89_C1226 holB; DNA polymerase III, delta prime subunit	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] 
E        UTI89_C0234 dnaQ; DNA polymerase III epsilon chain	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        UTI89_C0497 dnaX; DNA polymerase III subunit tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] 
E        UTI89_C5081 holD; DNA polymerase III, psi subunit	K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] 
E        UTI89_C2044 holE; DNA polymerase III theta subunit	K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] 
D      DNA ligase
E        UTI89_C2743 lig; DNA ligase	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
E        UTI89_C4191 yicF; hypothetical DNA ligase-like protein YicF	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      Other MMR factors
E        UTI89_C4376 uvrD; DNA helicase II	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        UTI89_C0288 hypothetical protein	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        UTI89_C4645 ssb; single strand DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
E        UTI89_P092 ssb; single strand DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
E        UTI89_C2687 bacteriophage HK97 gp40	K03111 ssb; single-strand DNA-binding protein 
E        UTI89_C3885 dam; DNA adenine methylase	K06223 dam; DNA adenine methylase [EC:2.1.1.72] 
E        UTI89_C2161 vsr; DNA mismatch endonuclease, patch repair protein	K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] 
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      RecBC pathway proteins
E        UTI89_C3221 recB; exodeoxyribonuclease V beta chain	K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] 
E        UTI89_C3223 recC; exodeoxyribonuclease V gamma chain	K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] 
E        UTI89_C3220 recD; exodeoxyribonuclease V alpha chain	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] 
E        UTI89_C3061 recA; RecA protein	K03553 recA; recombination protein RecA 
E        UTI89_C2065 ruvA; RuvA protein, Holliday junction helicase subunit B	K03550 ruvA; holliday junction DNA helicase RuvA 
E        UTI89_C2064 ruvB; RuvB protein, Holliday junction helicase subunit A	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        UTI89_C2067 ruvC; RuvC protein, Holliday junction nuclease	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
E        UTI89_C1298 rusA; Crossover junction endodeoxyribonuclease RusA	K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] 
E        UTI89_C2665 rus; holiday-junction resolvase	K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] 
E        UTI89_C1478 endodeoxyribonuclease RusA (Holliday junction resolvase)	K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] 
E        UTI89_C5104 hypothetical protein	K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] 
E        UTI89_C2996 bacteriophage V crossover junction endodeoxyribonuclease	K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] 
E        UTI89_C4520 priA; primosomal protein N'	K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] 
E        UTI89_C4801 priB; primosomal replication protein N	K02686 priB; primosomal replication protein N 
E        UTI89_C0494 priC; primosomal replication protein N''	K04067 priC; primosomal replication protein N'' 
E        UTI89_C5068 dnaT; primosomal protein I	K02317 dnaT; DNA replication protein DnaT 
E        UTI89_C2285 sbcB; exodeoxyribonuclease I	K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] 
E        UTI89_C0417 sbcC; exonuclease SbcC	K03546 sbcC; DNA repair protein SbcC/Rad50 
E        UTI89_C0418 sbcD; ATP-dependent dsDNA exonuclease	K03547 sbcD; DNA repair protein SbcD/Mre11 
D      RecFOR pathway proteins
E        UTI89_C3061 recA; RecA protein	K03553 recA; recombination protein RecA 
E        UTI89_C5160 radA; DNA repair protein RadA	K04485 radA; DNA repair protein RadA/Sms 
E        UTI89_C4250 recF; ssDNA and dsDNA binding, ATP binding	K03629 recF; DNA replication and repair protein RecF 
E        UTI89_C4197 recG; ATP-dependent DNA helicase RecG	K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] 
E        UTI89_C3277 recJ; single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
E        UTI89_C2886 recO; protein interacts with RecR and possibly RecF proteins	K03584 recO; DNA repair protein RecO (recombination protein O) 
E        UTI89_C0500 recR; recombination and repair protein RecR	K06187 recR; recombination protein RecR 
E        UTI89_C2950 recN; DNA repair protein RecN	K03631 recN; DNA repair protein RecN (Recombination protein N) 
E        UTI89_C0414 rdgC; nonspecific DNA binding protein; nucleoid component	K03554 rdgC; recombination associated protein RdgC 
E        UTI89_C2065 ruvA; RuvA protein, Holliday junction helicase subunit B	K03550 ruvA; holliday junction DNA helicase RuvA 
E        UTI89_C2064 ruvB; RuvB protein, Holliday junction helicase subunit A	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        UTI89_C2067 ruvC; RuvC protein, Holliday junction nuclease	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
D      AddAB pathway proteins
D      Other HR factor
E        UTI89_C0890 conserved hypothetical protein	K15342 cas1; CRISP-associated protein Cas1 
E        UTI89_C2461 yejH; hypothetical protein YejH	K19789 radD; DNA repair protein RadD 
D      Archaeal homologous recombinant proteins
E        UTI89_C0417 sbcC; exonuclease SbcC	K03546 sbcC; DNA repair protein SbcC/Rad50 
E        UTI89_C0418 sbcD; ATP-dependent dsDNA exonuclease	K03547 sbcD; DNA repair protein SbcD/Mre11 
E        UTI89_C4870 yjgR; hypothetical protein	K06915 herA; DNA double-strand break repair helicase HerA and related ATPase 
C    NHEJ (non-homologous end-joining)
D      Two-component NHEJ DNA repair complex
D      SHIIR (short-homology-independent illegitimate recombination)
E        Facilitator
F          UTI89_C2512 gyrA; DNA gyrase subunit A	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] 
F          UTI89_C4249 gyrB; DNA gyrase subunit B	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] 
F          UTI89_C1543 topA; DNA topoisomerase I	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
E        Supressor
F          UTI89_C3819 hupA; DNA-binding protein HU-alpha (HU-2)	K05787 hupA; DNA-binding protein HU-alpha 
F          UTI89_C0468 hupB; DNA-binding protein HU-beta, NS1 (HU-1)	K03530 hupB; DNA-binding protein HU-beta 
D      SHDIR (short-homology-dependent illegitimate recombination)
E        RecET pathway
F          UTI89_C3277 recJ; single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
F          UTI89_C2886 recO; protein interacts with RecR and possibly RecF proteins	K03584 recO; DNA repair protein RecO (recombination protein O) 
F          UTI89_C0500 recR; recombination and repair protein RecR	K06187 recR; recombination protein RecR 
F          UTI89_C2743 lig; DNA ligase	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
F          UTI89_C4191 yicF; hypothetical DNA ligase-like protein YicF	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
E        Facilitator
F          UTI89_C3703 fis; site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription	K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein 
F          UTI89_C1905 himA; integration host factor (IHF), alpha subunit	K04764 ihfA; integration host factor subunit alpha 
F          UTI89_C0983 himD; beta subunit of IHF transcriptional dual regulator	K05788 ihfB; integration host factor subunit beta 
E        Supressor
F          UTI89_C2285 sbcB; exodeoxyribonuclease I	K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] 
F          UTI89_C4386 recQ; ATP-dependent DNA helicase	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          UTI89_C4644 excision nuclease subunit A	K03701 uvrA; excinuclease ABC subunit A 
F          UTI89_C0777 uvrB; excision nuclease subunit B	K03702 uvrB; excinuclease ABC subunit B 
F          UTI89_C1434 hns; Hns transcriptional dual regulator	K03746 hns; DNA-binding protein H-NS 
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
D      UTI89_C0271 dinP; damage-inducible protein P; DNA polymerase IV	K02346 dinB; DNA polymerase IV [EC:2.7.7.7] 
D      UTI89_C1370 umuC; UmuC protein	K03502 umuC; DNA polymerase V 
D      UTI89_C1369 umuD; UmuD protein	K03503 umuD; DNA polymerase V [EC:3.4.21.-] 
D      UTI89_P064 impA; UV protection and mutation protein	K03503 umuD; DNA polymerase V [EC:3.4.21.-] 
C    Other SOS response factors
D      UTI89_C3061 recA; RecA protein	K03553 recA; recombination protein RecA 
D      UTI89_C4613 lexA; LexA, subunit of LexA transcriptional repressor	K01356 lexA; repressor LexA [EC:3.4.21.88] 
D      UTI89_C2997 hypothetical protein	K01356 lexA; repressor LexA [EC:3.4.21.88] 
D      UTI89_C5103 hypothetical protein	K01356 lexA; repressor LexA [EC:3.4.21.88] 
D      UTI89_C2950 recN; DNA repair protein RecN	K03631 recN; DNA repair protein RecN (Recombination protein N) 
D      UTI89_C0065 polB; DNA polymerase II	K02336 polB; DNA polymerase II [EC:2.7.7.7] 
D      UTI89_C4645 ssb; single strand DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
D      UTI89_P092 ssb; single strand DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
D      UTI89_C2687 bacteriophage HK97 gp40	K03111 ssb; single-strand DNA-binding protein 
D      UTI89_C4189 dinD; DNA-damage-inducible protein D	K14623 dinD; DNA-damage-inducible protein D 
D      UTI89_C1186 hypothetical protein	K12149 dinI; DNA-damage-inducible protein I 
D      UTI89_C5143 putative DNA damage-inducible protein	K12149 dinI; DNA-damage-inducible protein I 
D      UTI89_P065 impC; UV protection and mutation protein	K12149 dinI; DNA-damage-inducible protein I 
D      UTI89_C3060 oraA; RecA inhibitory protein RecX	K03565 recX; regulatory protein 
D      UTI89_C3912 yhgA; hypothetical protein	K01157 rpnA; recombination-promoting nuclease RpnA [EC:3.1.21.-] 
D      UTI89_C2589 yfcI; hypothetical protein	K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-] 
D      UTI89_C0146 yadD; conserved hypothetical protein	K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-] 
D      UTI89_C5047 hypothetical protein YfcI	K24089 rpnD; recombination-promoting nuclease RpnD [EC:3.1.21.-] 
D      UTI89_C2525 yfaD; conserved hypothetical protein	K24090 rpnE; recombination-promoting nuclease RpnE 
B  Other factors with a suspected DNA repair function
C    DNA polymerase
C    DNA helicases
D      UTI89_C4332 rep; rep helicase, a single-stranded DNA dependent ATPase	K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] 
D      UTI89_C1028 helD; DNA helicase IV	K03658 helD; DNA helicase IV [EC:5.6.2.4] 
D      UTI89_C0802 dinG; probable ATP-dependent helicase DinG	K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] 
D      UTI89_C2002 putative enzyme	K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] 
C    Modulation of nucleotide pools
D      UTI89_C0108 mutT; mutator MutT protein	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      UTI89_C4184 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase	K01520 dut; dUTP diphosphatase [EC:3.6.1.23] 
D      UTI89_C3035 nrdE; ribonucleoside-diphosphate reductase 2 alpha chain	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
D      UTI89_C2515 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit, B1	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
D      UTI89_C3036 nrdF; ribonucleoside-diphosphate reductase 2 beta chain	K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] 
D      UTI89_C2516 nrdB; ribonucleoside-diphosphate reductase 1 beta chain	K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] 
C    Others
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