+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Escherichia coli O7:K1 IAI39 (ExPEC)

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AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors D Cap binding complex C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) D Pre-mRNA cleavage factor IIm (CFIIm) D Cleavage and polyadenylation specificity factor (CPSF) complex D Cleavage stimulation factor (CSTF) complex D U7-dependent histone pre-mRNA processing factors D DRB sensitivity inducing factor (DSIF) complex D N6-methyltransferase complex D Poly(A) addition factors D Negative regulators of mRNA 3' end processing C Other processing factors B mRNA surveillance and transport factors C Transport factors D EJC complex D TREX complex D TREX-2 complex D Nuclear pore complex D Ran-mediated transport factors D eIF4F and regulatory proteins D APOBEC1-ACF complex D Other transport factors C Surveillance factors D Surveillance complex D Protein phosphatase 2A D Other surveillance factors C Factors involved in mRNA localization D Cargo complex D Factors that have mRNA localization signals D Trans-acting binding proteins D Other mRNA localization factors C mRNA cycle factors D Common to processing body (P body) and stress granule D P-body specific factors D Stress granule specific factors B mRNA degradation factors C 5'-3' decay D Decapping complex D Lsm complex D 5' exonucleases D Other 5'-3' decay factors C 3'-5' decay D Core exosome factors D Exosome cofactors D TRAMP complex D Ski complex D Ccr4-NOT complex D Pan complex D Other 3'-5' decay factors C Other degradation factors D RNases # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases E ECIAI39_2076 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12] E ECIAI39_3739 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] E ECIAI39_2772 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3] E ECIAI39_4644 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1] E ECIAI39_4627 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D Helicases E ECIAI39_3007 rhlB; ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] E ECIAI39_0773 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] E ECIAI39_3659 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] E ECIAI39_3917 conserved hypothetical protein; putative superfamily II DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] E ECIAI39_3187 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Other RNA degradosome components E ECIAI39_3198 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E ECIAI39_3661 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] E ECIAI39_3005 rho; transcription termination factor K03628 rho; transcription termination factor Rho E ECIAI39_3080 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E ECIAI39_0013 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK E ECIAI39_4608 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] E ECIAI39_4637 hfq; HF-I, host factor for RNA phage Q beta replication K03666 hfq; host factor-I protein D Others E ECIAI39_2642 ppk; polyphosphate kinase, component of RNA degradosome K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] E ECIAI39_0147 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] E ECIAI39_3249 nudH; nucleotide hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] E ECIAI39_2881 csrA; pleiotropic regulatory protein for carbon source metabolism K03563 csrA; carbon storage regulator E ECIAI39_3744 csrD; inner membrane associated factor modulating specific RNAseE dependent RNA degradation pathways K18765 csrD; RNase E specificity factor CsrD E ECIAI39_3065 rraA; ribonuclease E (RNase E) inhibitor protein K02553 rraA; regulator of ribonuclease activity A E ECIAI39_4728 yjgD; conserved hypothetical protein K09893 rraB; regulator of ribonuclease activity B E ECIAI39_3700 yhbJ; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K06958 rapZ; RNase adapter protein RapZ E ECIAI39_1718 hrpA; ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] E ECIAI39_0152 hrpB; ATP-dependent (RNA) helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] D Bacterial Small RNA Regulators E ECIAI39_miscRNA26 dsrA; DsrA K18502 dsrA; small regulatory RNA DsrA E ECIAI39_miscRNA86 ryhA; RyhA K18504 arcZ; small regulatory RNA ArcZ E ECIAI39_miscRNA58 tke1; Tke1 K15841 glmY; small regulatory RNA GlmY E ECIAI39_miscRNA66 ryiA; RyiA K18505 glmZ; small regulatory RNA GlmZ E ECIAI39_miscRNA5 sgrS; SgrS K18506 sgrS; small regulatory RNA SgrS E ECIAI39_miscRNA89 ryhB; RyhB K18507 ryhB; small regulatory RNA RyhB E ECIAI39_miscRNA16 rybB; RybB K18508 rybB; small regulatory RNA RybB E ECIAI39_miscRNA64 micA; MicA K18511 micA; small regulatory RNA MicA E ECIAI39_miscRNA43 micC; MicC K18512 micC; small regulatory RNA MicC E ECIAI39_miscRNA52 micF; MicF K18513 micF; small regulatory RNA MicF E ECIAI39_miscRNA71 csrB; CsrB K18515 csrB; small regulatory RNA CsrB E ECIAI39_miscRNA69 csrC; CsrC K18516 csrC; small regulatory RNA CsrC E ECIAI39_miscRNA33 rprA; RprA K18518 rprA; small regulatory RNA RprA E ECIAI39_miscRNA25 rseX; RseX K18519 rseX; small regulatory RNA RseX E ECIAI39_miscRNA19 ryeE; RyeE K18520 cyaR; small regulatory RNA CyaR E ECIAI39_miscRNA72 gcvB; GcvB K18521 gcvB; small regulatory RNA GcvB E ECIAI39_miscRNA73 omrA; OmrA K18522 omrA; small regulatory RNA OmrA E ECIAI39_miscRNA74 omrB; OmrB K18523 omrB; small regulatory RNA OmrB E ECIAI39_miscRNA90 gadY; GadY K18525 gadY; small regulatory RNA GadY E ECIAI39_miscRNA94 istR; IstR K18526 istR; sRNA antisense regulator of TisB protein E ECIAI39_miscRNA70 spf; Spot42 K18527 spf; small regulatory RNA Spot 42 E ECIAI39_miscRNA68 oxyS; OxyS K18528 oxyS; small regulatory RNA OxyS B Archeal mRNA degradation factors C Exosome components D Core exosome D Cofactors D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024