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Transcription Machinery - Escherichia coli O7:K1 IAI39 (ExPEC)
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E ECIAI39_3790 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E ECIAI39_4372 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E ECIAI39_4373 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E ECIAI39_4171 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E ECIAI39_3563 rpoD; RNA polymerase, sigma 70 (sigma D) factor K03086 rpoD; RNA polymerase primary sigma factor
E ECIAI39_2929 rpoS; RNA polymerase, sigma S (sigma 38) factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E ECIAI39_2778 rpoE; RNA polymerase, sigma 24 (sigma E) factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E ECIAI39_4771 fecI; RNA polymerase, sigma 19 factor; KpLE2 phage-like element K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E ECIAI39_3942 rpoH; RNA polymerase, sigma 32 (sigma H) factor K03089 rpoH; RNA polymerase sigma-32 factor
E ECIAI39_3697 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
E ECIAI39_1133 fliA; RNA polymerase, sigma 28 (sigma F) factor K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E ECIAI39_0062 hepA; RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
E ECIAI39_3666 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
E ECIAI39_0260 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
E ECIAI39_4367 nusG; transcription termination factor K02601 nusG; transcription termination/antitermination protein NusG
E ECIAI39_3718 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
E ECIAI39_3717 sspB; ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
E ECIAI39_2777 rseA; anti-sigma factor K03597 rseA; sigma-E factor negative regulatory protein RseA
E ECIAI39_2776 rseB; anti-sigma factor K03598 rseB; sigma-E factor negative regulatory protein RseB
E ECIAI39_2775 rseC; RseC protein involved in reduction of the SoxR iron-sulfur cluster K03803 rseC; sigma-E factor negative regulatory protein RseC
D Transcription elongation factors
E ECIAI39_0149 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
E ECIAI39_3676 greA; transcription elongation factor K03624 greA; transcription elongation factor GreA
E ECIAI39_3886 greB; transcription elongation factor K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E ECIAI39_3005 rho; transcription termination factor K03628 rho; transcription termination factor Rho
E ECIAI39_0459 rof; modulator of Rho-dependent transcription termination K19000 rof; Rho-binding antiterminator
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024