+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Escherichia coli DH1
%
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E ECDH1ME8569_1019 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
E ECDH1ME8569_3134 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
E ECDH1ME8569_2494 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
E ECDH1ME8569_4036 rnr; exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
E ECDH1ME8569_4022 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E ECDH1ME8569_3661 rhlB; ATP-dependent RNA helicase rhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
E ECDH1ME8569_0750 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E ECDH1ME8569_3053 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E ECDH1ME8569_3701 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E ECDH1ME8569_2689 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E ECDH1ME8569_3055 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E ECDH1ME8569_3664 rho; transcription termination factor rho K03628 rho; transcription termination factor Rho
E ECDH1ME8569_3785 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E ECDH1ME8569_0013 dnaK; chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
E ECDH1ME8569_4001 groL; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E ECDH1ME8569_4029 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Others
E ECDH1ME8569_2427 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
E ECDH1ME8569_0137 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
E ECDH1ME8569_2737 nudH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
E ECDH1ME8569_2606 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
E ECDH1ME8569_3139 csrD; regulatory protein CsrD K18765 csrD; RNase E specificity factor CsrD
E ECDH1ME8569_3798 rraA; regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
E ECDH1ME8569_4109 rraB; hypothetical protein K09893 rraB; regulator of ribonuclease activity B
E ECDH1ME8569_3094 yhbJ; hypothetical protein K06958 rapZ; RNase adapter protein RapZ
E ECDH1ME8569_1356 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
E ECDH1ME8569_0142 hrpB; ATP-dependent RNA helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D Bacterial Small RNA Regulators
E ECDH1ME8569_o0037 dsrA; antisense_RNA K18502 dsrA; small regulatory RNA DsrA
E ECDH1ME8569_o0065 ryhA; small RNA K18504 arcZ; small regulatory RNA ArcZ
E ECDH1ME8569_o0048 sroF; small RNA K15841 glmY; small regulatory RNA GlmY
E ECDH1ME8569_o0075 ryiA; regulatory sRNA K18505 glmZ; small regulatory RNA GlmZ
E ECDH1ME8569_o0002 sgrS; antisense_RNA K18506 sgrS; small regulatory RNA SgrS
E ECDH1ME8569_o0069 ryhB; regulatory sRNA K18507 ryhB; small regulatory RNA RyhB
E ECDH1ME8569_o0011 rybB; small RNA K18508 rybB; small regulatory RNA RybB
E ECDH1ME8569_o0051 sraD; antisense_RNA K18511 micA; small regulatory RNA MicA
E ECDH1ME8569_o0026 micC; regulatory sRNA K18512 micC; small regulatory RNA MicC
E ECDH1ME8569_o0044 micF; regulatory sRNA K18513 micF; small regulatory RNA MicF
E ECDH1ME8569_o0052 csrB; regulatory sRNA K18515 csrB; small regulatory RNA CsrB
E ECDH1ME8569_o0077 csrC; regulatory sRNA K18516 csrC; small regulatory RNA CsrC
E ECDH1ME8569_o0031 rprA; regulatory sRNA K18518 rprA; small regulatory RNA RprA
E ECDH1ME8569_o0041 ryeE; small RNA K18520 cyaR; small regulatory RNA CyaR
E ECDH1ME8569_o0053 gcvB; regulatory sRNA K18521 gcvB; small regulatory RNA GcvB
E ECDH1ME8569_o0054 rygA; small RNA K18522 omrA; small regulatory RNA OmrA
E ECDH1ME8569_o0055 rygB; small RNA K18523 omrB; small regulatory RNA OmrB
E ECDH1ME8569_o0072 gadY; small RNA K18525 gadY; small regulatory RNA GadY
E ECDH1ME8569_o0076 spf; Spot 42 RNA K18527 spf; small regulatory RNA Spot 42
E ECDH1ME8569_o0079 oxyS; regulatory sRNA K18528 oxyS; small regulatory RNA OxyS
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024