+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Escherichia coli DH1

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AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors D Cap binding complex C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) D Pre-mRNA cleavage factor IIm (CFIIm) D Cleavage and polyadenylation specificity factor (CPSF) complex D Cleavage stimulation factor (CSTF) complex D U7-dependent histone pre-mRNA processing factors D DRB sensitivity inducing factor (DSIF) complex D N6-methyltransferase complex D Poly(A) addition factors D Negative regulators of mRNA 3' end processing C Other processing factors B mRNA surveillance and transport factors C Transport factors D EJC complex D TREX complex D TREX-2 complex D Nuclear pore complex D Ran-mediated transport factors D eIF4F and regulatory proteins D APOBEC1-ACF complex D Other transport factors C Surveillance factors D Surveillance complex D Protein phosphatase 2A D Other surveillance factors C Factors involved in mRNA localization D Cargo complex D Factors that have mRNA localization signals D Trans-acting binding proteins D Other mRNA localization factors C mRNA cycle factors D Common to processing body (P body) and stress granule D P-body specific factors D Stress granule specific factors B mRNA degradation factors C 5'-3' decay D Decapping complex D Lsm complex D 5' exonucleases D Other 5'-3' decay factors C 3'-5' decay D Core exosome factors D Exosome cofactors D TRAMP complex D Ski complex D Ccr4-NOT complex D Pan complex D Other 3'-5' decay factors C Other degradation factors D RNases # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases E ECDH1ME8569_1019 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] E ECDH1ME8569_3134 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] E ECDH1ME8569_2494 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3] E ECDH1ME8569_4036 rnr; exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] E ECDH1ME8569_4022 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D Helicases E ECDH1ME8569_3661 rhlB; ATP-dependent RNA helicase rhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] E ECDH1ME8569_0750 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] E ECDH1ME8569_3053 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] E ECDH1ME8569_3701 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Other RNA degradosome components E ECDH1ME8569_2689 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E ECDH1ME8569_3055 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] E ECDH1ME8569_3664 rho; transcription termination factor rho K03628 rho; transcription termination factor Rho E ECDH1ME8569_3785 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E ECDH1ME8569_0013 dnaK; chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK E ECDH1ME8569_4001 groL; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7] E ECDH1ME8569_4029 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D Others E ECDH1ME8569_2427 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] E ECDH1ME8569_0137 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] E ECDH1ME8569_2737 nudH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] E ECDH1ME8569_2606 csrA; carbon storage regulator K03563 csrA; carbon storage regulator E ECDH1ME8569_3139 csrD; regulatory protein CsrD K18765 csrD; RNase E specificity factor CsrD E ECDH1ME8569_3798 rraA; regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A E ECDH1ME8569_4109 rraB; hypothetical protein K09893 rraB; regulator of ribonuclease activity B E ECDH1ME8569_3094 yhbJ; hypothetical protein K06958 rapZ; RNase adapter protein RapZ E ECDH1ME8569_1356 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] E ECDH1ME8569_0142 hrpB; ATP-dependent RNA helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] D Bacterial Small RNA Regulators E ECDH1ME8569_o0037 dsrA; antisense_RNA K18502 dsrA; small regulatory RNA DsrA E ECDH1ME8569_o0065 ryhA; small RNA K18504 arcZ; small regulatory RNA ArcZ E ECDH1ME8569_o0048 sroF; small RNA K15841 glmY; small regulatory RNA GlmY E ECDH1ME8569_o0075 ryiA; regulatory sRNA K18505 glmZ; small regulatory RNA GlmZ E ECDH1ME8569_o0002 sgrS; antisense_RNA K18506 sgrS; small regulatory RNA SgrS E ECDH1ME8569_o0069 ryhB; regulatory sRNA K18507 ryhB; small regulatory RNA RyhB E ECDH1ME8569_o0011 rybB; small RNA K18508 rybB; small regulatory RNA RybB E ECDH1ME8569_o0051 sraD; antisense_RNA K18511 micA; small regulatory RNA MicA E ECDH1ME8569_o0026 micC; regulatory sRNA K18512 micC; small regulatory RNA MicC E ECDH1ME8569_o0044 micF; regulatory sRNA K18513 micF; small regulatory RNA MicF E ECDH1ME8569_o0052 csrB; regulatory sRNA K18515 csrB; small regulatory RNA CsrB E ECDH1ME8569_o0077 csrC; regulatory sRNA K18516 csrC; small regulatory RNA CsrC E ECDH1ME8569_o0031 rprA; regulatory sRNA K18518 rprA; small regulatory RNA RprA E ECDH1ME8569_o0041 ryeE; small RNA K18520 cyaR; small regulatory RNA CyaR E ECDH1ME8569_o0053 gcvB; regulatory sRNA K18521 gcvB; small regulatory RNA GcvB E ECDH1ME8569_o0054 rygA; small RNA K18522 omrA; small regulatory RNA OmrA E ECDH1ME8569_o0055 rygB; small RNA K18523 omrB; small regulatory RNA OmrB E ECDH1ME8569_o0072 gadY; small RNA K18525 gadY; small regulatory RNA GadY E ECDH1ME8569_o0076 spf; Spot 42 RNA K18527 spf; small regulatory RNA Spot 42 E ECDH1ME8569_o0079 oxyS; regulatory sRNA K18528 oxyS; small regulatory RNA OxyS B Archeal mRNA degradation factors C Exosome components D Core exosome D Cofactors D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024