+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Encephalitozoon hellem

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AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors E EHEL_100390 mRNA capping enzyme K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] E EHEL_021380 serine/threonine kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E EHEL_090390 mRNA capping enzyme subunit alpha K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50] D Cap binding complex E EHEL_030660 RNA-binding protein K12883 NCBP2; nuclear cap-binding protein subunit 2 C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) D Pre-mRNA cleavage factor IIm (CFIIm) E EHEL_051230 pre-mRNA cleavage GTPase subunit K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] D Cleavage and polyadenylation specificity factor (CPSF) complex E EHEL_110480 pre-mRNA cleavage and polyadenylation specificity factor K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 E EHEL_050430 beta-CASP domain-containing protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 E EHEL_100910 putative RNA-processing beta-lactamase-fold exonuclease K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E EHEL_010290 cleavage and polyadenylation specificity factor subunit Clipper K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 E EHEL_101530 putative zinc finger protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 E EHEL_111280 polyadenylation factor I complex subunit FIP1-like protein K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 E EHEL_090320 DWNN ubiquitin-like domain-containing protein K15541 MPE1; protein MPE1 E EHEL_021330 hypothetical protein K15542 PFS2; polyadenylation factor subunit 2 E EHEL_041550 hypothetical protein K14962 WDR82; COMPASS component SWD2 E EHEL_110540 PP1 serine/threonine phosphatase K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E EHEL_060780 Ssu72-like RNA polymerase II-interacting protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] D Cleavage stimulation factor (CSTF) complex E EHEL_080300 RNA binding protein K14407 CSTF2; cleavage stimulation factor subunit 2 E EHEL_020850 Suf domain-containing protein K14408 CSTF3; cleavage stimulation factor subunit 3 E EHEL_060720 symplekin domain-containing protein K06100 SYMPK; symplekin D U7-dependent histone pre-mRNA processing factors E EHEL_080470 Sm-like protein K11086 SNRPB; small nuclear ribonucleoprotein B and B' E EHEL_030740 small nuclear ribonucleoprotein K11088 SNRPD3; small nuclear ribonucleoprotein D3 E EHEL_020940 LSM domain-containing protein K11097 SNRPE; small nuclear ribonucleoprotein E E EHEL_040700 Sm-like ribonucleoprotein K11098 SNRPF; small nuclear ribonucleoprotein F E EHEL_051010 small nuclear ribonucleoprotein K11099 SNRPG; small nuclear ribonucleoprotein G E EHEL_050430 beta-CASP domain-containing protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 E EHEL_100910 putative RNA-processing beta-lactamase-fold exonuclease K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E EHEL_080300 RNA binding protein K14407 CSTF2; cleavage stimulation factor subunit 2 E EHEL_060720 symplekin domain-containing protein K06100 SYMPK; symplekin D DRB sensitivity inducing factor (DSIF) complex E EHEL_081630 transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4 E EHEL_111820 SPT5-like transcription initiation protein K15172 SUPT5H; transcription elongation factor SPT5 D N6-methyltransferase complex D Poly(A) addition factors E EHEL_020650 poly(A) polymerase K14376 PAP; poly(A) polymerase [EC:2.7.7.19] D Negative regulators of mRNA 3' end processing C Other processing factors B mRNA surveillance and transport factors C Transport factors D EJC complex D TREX complex D TREX-2 complex D Nuclear pore complex E EHEL_061540 hypothetical protein K14298 RAE1; mRNA export factor E EHEL_111340 hypothetical protein K14004 SEC13; protein transport protein SEC13 E EHEL_111710 hypothetical protein K14306 NUP62; nuclear pore complex protein Nup62 E EHEL_020380 nucleoporin autopeptidase domain-containing protein K14297 NUP98; nuclear pore complex protein Nup98-Nup96 E EHEL_060420 nuclear pore complex subunit Nup170 K14312 NUP155; nuclear pore complex protein Nup155 D Ran-mediated transport factors E EHEL_041530 GTP-binding nuclear protein K07936 RAN; GTP-binding nuclear protein Ran E EHEL_011130 AAA+ ATPase K13525 VCP; transitional endoplasmic reticulum ATPase E EHEL_110120 putative exportin 1 K14290 XPO1; exportin-1 E EHEL_050700 Ran GTPase-activating protein K14319 RANGAP1; Ran GTPase-activating protein 1 D eIF4F and regulatory proteins E EHEL_111240 translation initiation factor K03259 EIF4E; translation initiation factor 4E E EHEL_080860 translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E E EHEL_091490 ATP-dependent RNA helicase K03257 EIF4A; translation initiation factor 4A E EHEL_041580 hypothetical protein K03260 EIF4G; translation initiation factor 4G E EHEL_101120 polyadenylate-binding protein K13126 PABPC; polyadenylate-binding protein E EHEL_070300 U2 snRNP/pre-mRNA association factor K13126 PABPC; polyadenylate-binding protein D APOBEC1-ACF complex D Other transport factors E EHEL_031300 PelA-like RNA-binding protein K06965 PELO; protein pelota E EHEL_010400 putative RNA-binding protein K14396 PABPN1; polyadenylate-binding protein 2 E EHEL_021460 putative DEAD-box helicase K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] E EHEL_041470 regulator of chromosome condensation domain-containing protein K11493 RCC1; regulator of chromosome condensation E EHEL_060210 hypothetical protein K22415 ZC3H11; zinc finger CCCH domain-containing protein 11 C Surveillance factors D Surveillance complex E EHEL_050400 eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1 E EHEL_061420 translation elongation factor EF-1 alpha K03267 ERF3; peptide chain release factor subunit 3 D Protein phosphatase 2A E EHEL_040600 PP2A-like phosphoprotein phosphatase K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] E EHEL_091170 hypothetical protein K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A E EHEL_050890 serine/threonine protein phosphatase 2A-like protein K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B E EHEL_040140 protein phosphatase 2A K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' D Other surveillance factors C Factors involved in mRNA localization D Cargo complex E EHEL_092020 myosin heavy chain K10357 MYO5; myosin V D Factors that have mRNA localization signals D Trans-acting binding proteins E EHEL_041030 translation elongation factor EF-1 alpha K03231 EEF1A; elongation factor 1-alpha D Other mRNA localization factors C mRNA cycle factors D Common to processing body (P body) and stress granule E EHEL_111240 translation initiation factor K03259 EIF4E; translation initiation factor 4E E EHEL_080860 translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E E EHEL_091650 ATP-dependent RNA helicase K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] D P-body specific factors E EHEL_071610 mRNA decapping enzyme 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] E EHEL_051430 LSM domain-containing protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E EHEL_091840 small nuclear ribonucleoprotein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 E EHEL_030270 U6 snRNA associated Sm-like protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E EHEL_080050 putative small nuclear ribonucleoprotein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E EHEL_061080 small nuclear ribonucleoprotein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E EHEL_110510 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E EHEL_092020 myosin heavy chain K10357 MYO5; myosin V E EHEL_071170 alpha tubulin K07374 TUBA; tubulin alpha E EHEL_111260 negative regulator of transcription cell division control protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E EHEL_010920 general negative regulator of transcription K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E EHEL_110650 putative mRNA deadenylase K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E EHEL_080810 mRNA deadenylase subunit K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E EHEL_071730 RNA polymerase II subunit 7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 D Stress granule specific factors E EHEL_101120 polyadenylate-binding protein K13126 PABPC; polyadenylate-binding protein E EHEL_070300 U2 snRNP/pre-mRNA association factor K13126 PABPC; polyadenylate-binding protein E EHEL_110550 eukaryotic translation initiation factor eIF2A K15026 EIF2A; translation initiation factor 2A E EHEL_091490 ATP-dependent RNA helicase K03257 EIF4A; translation initiation factor 4A E EHEL_041580 hypothetical protein K03260 EIF4G; translation initiation factor 4G E EHEL_081100 WD40 domain-containing protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein B mRNA degradation factors C 5'-3' decay D Decapping complex E EHEL_071610 mRNA decapping enzyme 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] E EHEL_091650 ATP-dependent RNA helicase K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] D Lsm complex E EHEL_051430 LSM domain-containing protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E EHEL_091840 small nuclear ribonucleoprotein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 E EHEL_030270 U6 snRNA associated Sm-like protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E EHEL_080050 putative small nuclear ribonucleoprotein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E EHEL_061080 small nuclear ribonucleoprotein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E EHEL_110510 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 D 5' exonucleases D Other 5'-3' decay factors E EHEL_101750 hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] C 3'-5' decay D Core exosome factors E EHEL_101360 Rrp4-like RNA-binding protein K03679 RRP4; exosome complex component RRP4 E EHEL_091450 RNA-binding protein K03681 RRP40; exosome complex component RRP40 E EHEL_090800 ribonuclease K11600 RRP41; exosome complex component RRP41 E EHEL_100260 RNase PH-like protein K12590 RRP46; exosome complex component RRP46 E EHEL_111950 hypothetical protein K12586 RRP43; exosome complex component RRP43 E EHEL_060320 RNase PH-like exoribonuclease K03678 RRP45; exosome complex component RRP45 D Exosome cofactors E EHEL_111020 hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] E EHEL_051040 putative superfamily II RNA helicase K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7] D TRAMP complex E EHEL_061510 DNA polymerase sigma K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] E EHEL_110530 zinc knuckle domain-containing protein K12597 AIR1_2; protein AIR1/2 E EHEL_040820 superfamily II RNA helicase K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] D Ski complex D Ccr4-NOT complex E EHEL_110650 putative mRNA deadenylase K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E EHEL_111260 negative regulator of transcription cell division control protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E EHEL_010920 general negative regulator of transcription K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E EHEL_080810 mRNA deadenylase subunit K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E EHEL_010230 cell differentiation protein Rcd1 K12606 RCD1; CCR4-NOT transcription complex subunit 9 D Pan complex D Other 3'-5' decay factors E EHEL_101750 hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] C Other degradation factors D RNases # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases D Helicases D Other RNA degradosome components E EHEL_101720 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E EHEL_030590 ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E EHEL_110410 HSP70-like protein K04043 dnaK; molecular chaperone DnaK D Others D Bacterial Small RNA Regulators B Archeal mRNA degradation factors C Exosome components D Core exosome E EHEL_101360 Rrp4-like RNA-binding protein K03679 RRP4; exosome complex component RRP4 D Cofactors E EHEL_090800 ribonuclease K11600 RRP41; exosome complex component RRP41 D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024