+F Repair protein KO #

  DNA Repair and Recombination Proteins - Erwinia pyrifoliae DSM 12163

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D EPYR_02626 ogt; methylated-DNA-protein-cysteinemethyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D EPYR_02654 phrB; deoxyribodipyrimidine photolyase (photoreactivation) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E EPYR_01049 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E EPYR_03238 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E EPYR_02017 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D EPYR_00815 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EPYR_02799 NADH pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EPYR_00079 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D EPYR_02626 ogt; methylated-DNA-protein-cysteinemethyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D EPYR_02654 phrB; deoxyribodipyrimidine photolyase (photoreactivation) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D EPYR_01380 alkB; Alpha-ketoglutarate-dependent dioxygenase alkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E EPYR_01049 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E EPYR_00435 ygjF; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E EPYR_03238 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E EPYR_00688 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E EPYR_03934 tag; 3-methyladenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E EPYR_00084 mutM; formamidopyrimidine DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E EPYR_02646 nei; endonuclease VIII and formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E EPYR_02017 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E EPYR_01765 xthA; Exodeoxyribonuclease III (EXO III),Exodeoxyribonuclease III xth,Endonuclease/Exonuclease/phosphatase family,exoDNase_III: exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E EPYR_01427 nfo; probable endonuclease 4 (Endodeoxyribonuclease IV) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E EPYR_00276 nfi; endonuclease V (deoxyinosine 3'endoduclease) K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E EPYR_03166 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E EPYR_01224 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E EPYR_00047 ligB; putative NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E EPYR_00024 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E EPYR_03546 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E EPYR_02589 uvrB; Excinuclease UvrABC subunit B K03702 uvrB; excinuclease ABC subunit B E EPYR_02379 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E EPYR_02097 cho; putative excinuclease cho K05984 cho; excinuclease Cho [EC:3.1.25.-] E EPYR_00217 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E EPYR_00024 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E EPYR_01224 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E EPYR_00047 ligB; putative NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F EPYR_00258 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F EPYR_00259 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F EPYR_03610 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F EPYR_00043 rpoZ; DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F EPYR_02289 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E EPYR_03049 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E EPYR_00520 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E EPYR_03117 mutH; DNA mismatch repair protein mutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E EPYR_01518 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E EPYR_01117 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E EPYR_02865 xseB; exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E EPYR_01701 exoX; exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E EPYR_00933 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E EPYR_03954 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E EPYR_00400 holC; DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E EPYR_02688 holA; holA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E EPYR_02305 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E EPYR_02996 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E EPYR_02808 dnaX; DNA polymerase III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E EPYR_01702 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E EPYR_01224 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E EPYR_00047 ligB; putative NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E EPYR_00217 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E EPYR_03545 ssb; Single-stranded DNA-binding protein (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein E EPYR_03285 ssb; Single-stranded DNA-binding protein (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein E EPYR_03671 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E EPYR_01600 vsr; patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E EPYR_03100 recB; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E EPYR_03102 recC; Exodeoxyribonuclease V gamma chain (Exodeoxyribonuclease V 125 kDa polypeptide) K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E EPYR_03099 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E EPYR_03033 recA; Recombinase A K03553 recA; recombination protein RecA E EPYR_01685 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E EPYR_01686 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E EPYR_01684 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E EPYR_00146 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E EPYR_00535 priB; Nucleic acid-binding, OB-fold, Single-strand binding protein family K02686 priB; primosomal replication protein N E EPYR_02811 priC; Primosomal replication protein priC K04067 priC; primosomal replication protein N'' E EPYR_01518 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E EPYR_02890 sbcC; Nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E EPYR_02889 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E EPYR_03033 recA; Recombinase A K03553 recA; recombination protein RecA E EPYR_00702 sms; DNA repair protein radA homolog K04485 radA; DNA repair protein RadA/Sms E EPYR_03953 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E EPYR_00040 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E EPYR_03166 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E EPYR_01066 recO; DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) E EPYR_02806 recR; Recombination protein recR K06187 recR; recombination protein RecR E EPYR_01045 recN; DNA repair protein recN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) E EPYR_02905 rdgC; Recombination-associated protein rdgC K03554 rdgC; recombination associated protein RdgC E EPYR_01685 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E EPYR_01686 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E EPYR_01684 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E EPYR_00872 ygbT; Uncharacterized protein ygbT K15342 cas1; CRISP-associated protein Cas1 E EPYR_00858 ygbT; Uncharacterized protein ygbT K15342 cas1; CRISP-associated protein Cas1 E EPYR_01409 yejH; Uncharacterized protein yejH K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E EPYR_02890 sbcC; Nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E EPYR_02889 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E EPYR_00406 yjgR; Uncharacterized protein yjgR K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F EPYR_01369 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F EPYR_03952 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F EPYR_01809 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F EPYR_00278 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha F EPYR_02836 hupB; transcriptional regulator HU subunit beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F EPYR_03166 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F EPYR_01066 recO; DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) F EPYR_02806 recR; Recombination protein recR K06187 recR; recombination protein RecR F EPYR_01224 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F EPYR_00047 ligB; putative NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F EPYR_00287 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F EPYR_02077 himA; Integration host factor subunit alpha (IHF-alpha) K04764 ihfA; integration host factor subunit alpha F EPYR_02450 himD; Integration host factor beta-subunit (IHF-beta) K05788 ihfB; integration host factor subunit beta E Supressor F EPYR_01518 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F EPYR_00221 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F EPYR_03546 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F EPYR_02589 uvrB; Excinuclease UvrABC subunit B K03702 uvrB; excinuclease ABC subunit B F EPYR_01772 hns; DNA-binding protein H-NS, Histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F EPYR_03991 hns; histone-like nucleoid structuring protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D EPYR_02959 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D EPYR_01644 umuC; DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D EPYR_01645 umuD; Error-prone repair, SOS-response transcriptional repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D EPYR_03033 recA; Recombinase A K03553 recA; recombination protein RecA D EPYR_03579 lexA; regulator for SOS(LexA) regulon K01356 lexA; repressor LexA [EC:3.4.21.88] D EPYR_01045 recN; DNA repair protein recN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) D EPYR_00761 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D EPYR_03545 ssb; Single-stranded DNA-binding protein (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein D EPYR_03285 ssb; Single-stranded DNA-binding protein (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein D EPYR_02345 dinI; DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D EPYR_03032 recX; Regulatory protein recX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D EPYR_00187 rep; ATP-dependent DNA helicase RepA K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D EPYR_02407 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D EPYR_02550 dinG; probable ATP-dependent helicase dinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D EPYR_01729 yoaA; probable ATP-dependent helicase dinG homolog K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D EPYR_00815 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EPYR_02799 NADH pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EPYR_00079 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D EPYR_00967 nrdE; ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D EPYR_01366 nrdA; Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D EPYR_01365 nrdB; ribonucleoside-diphosphate reductase 1 beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D EPYR_00966 nrdF; ribonucleoside-diphosphate reductase 2 beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024