+E	Transcription factors	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Factors - Agathobacter rectalis ATCC 33656</h2>
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A<b>Eukaryotic type</b>
B  Basic leucine zipper (bZIP)
C    AP-1(-like) components, Jun
C    AP-1(-like) components, Fos
C    AP-1(-like) components, Maf
C    AP-1(-like) components, NF-E2
C    AP-1(-like) components, Fungal regulators
C    AP-1(-like) components, CRE-BP/ATF
C    CREB
C    C/EBP-like factors
C    bZIP/PAR
C    Plant bZIP factors
C    ZIP only
B  Basic helix-loop-helix (bHLH)
C    Ubiquitous (class A) factors
C    Myogenic transcription factors
C    Achaete-Scute
C    Tal/Twist/Atonal/Hen, Lymphoid factors
C    Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C    Tal/Twist/Atonal/Hen, HEN
C    Tal/Twist/Atonal/Hen, Mesp
C    Tal/Twist/Atonal/Hen, Atonal
C    Tal/Twist/Atonal/Hen, Pancreatic factors
C    Hairy, Hairy/E(SPL)
C    Hairy, Fungal regulators
C    Factors with PAS domain
C    Yabby
C    INO
C    HLH domain only
B  Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C    Ubiquitous bHLH-ZIP factors
C    Cell cycle controlling factors, Myc
C    Cell cycle controlling factors, Mad/Max
C    Other bHLH-ZIP factors
B  Other basic domains
C    NF-1
C    RF-X
C    AP-2 (bHSH)
B  Zinc finger
C    Cys4 thyroid hormone receptor-like
C    Cys4 hepatocyte nuclear factor 4-like
C    Cys4 estrogen receptor-like
C    Cys4 nerve growth factor IB-like
C    Cys4 Fushi tarazu-F1-like
C    Cys4 germ cell nuclear factor
C    Cys4 Knirps/DAX1-like
C    Cys4 GATA-factors
C    Cys2His2 SP/KLF family and related proteins
C    Cys2His2 GLI-like
C    Cys2His2 Snail
C    Cys2His2 BTB-ZF factors
C    Cys2His2 BED
C    Cys2His2 PRDM
C    Cys2His2 metabolic regulators in fungi
C    Cys2His2 others
C    Cys2HisCys zinc factors
C    Cys3His zinc factors
C    Cys2CysHis zinc factors
C    CXXC CpG-binding proteins
D      EUBREC_0812 DNA-cytosine methyltransferase	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
D      EUBREC_0156 cytosine-specific methyltransferase	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
D      EUBREC_0158 modification methylase, putative	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
D      EUBREC_0163 modification methylase	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
D      EUBREC_2683 DNA-cytosine methyltransferase	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
D      EUBREC_0628 DcmB	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
C    Cys6 metabolic regulators in fungi
C    Other zinc fingers
B  Helix-turn-helix
C    Homeo domain ANTP: HOXL
C    Homeo domain ANTP: NKL
C    Homeo domain Paired-related
C    Homeo domain LIM
C    Homeo domain POU
C    Homeo domain SINE
C    Homeo domain ZF
C    Homeo domain CUT
C    Homeo domain PROS
C    Homeo domain TALE
C    Homeo domain other
C    Fork head/winged helix developmental regulators
C    Fork head/winged helix tissue-specific regulators
C    Fork head/winged helix cell cycle-controlling factors, E2F
C    Fork head/winged helix cell cycle-controlling factors, DP
C    Fork head/winged helix other regulators
C    Heat shock factors
C    Tryptophan clusters Myb, Myb-factors
C    Tryptophan clusters Myb, Myb-like factors
C    Tryptophan clusters Ets-type
C    Tryptophan clusters interferon-regulating factors
C    TEA domain
C    ARID
B  beta-Scaffold factors with minor groove contacts
C    RHR (Rel homology region) Rel/Ankyrin
C    RHR (Rel homology region) Ankyrin only
C    RHR (Rel homology region) NF-AT
C    STAT
C    p53
C    MADS-box regulators of differentiation, MEF-2
C    MADS-box regulators of differentiation, Homeotic genes
C    MADS-box regulators of differentiation, Yeast regulators
C    MADS-box responders to external signals
C    SAND domain-containing proteins
C    TATA-binding proteins
C    HMG SOX
C    HMG TCF-1
C    HMG2-related
C    UBF
C    Other HMG box factors
C    Heteromeric CCAAT factors
C    Grainyhead
C    Cold-shock domain factors, DbpA-like
C    Cold-shock domain factors, YB-1/DbpB-like
C    Cold-shock domain factors, FRG Y2-like
C    Runt
C    MYRF
B  Other transcription factors
C    HMGI(Y)
C    NUPR
E        Line #4
C    Pocket domain Rb
C    Pocket domain CBP
C    T-box
C    DMRT
C    LRRFIP
C    TCP
C    AP2/ERF
C    WRKY
C    LOB
C    Copper-fist proteins fungal regulators
C    Others
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A<b>Prokaryotic type</b>
B  Helix-turn-helix
C    AraC family
D      EUBREC_2032 two-component response regulator	K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein 
D      EUBREC_2815 transcriptional regulator, AraC family	K07506 K07506; AraC family transcriptional regulator 
C    LysR family
C    DeoR family
D      EUBREC_0017 transcription repressor of fructose operon FruR	K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor 
D      EUBREC_0618 stage III sporulation protein D	K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D 
C    LacI family
D      EUBREC_0280 transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      EUBREC_1073 transcriptional regulator (LacI family)	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      EUBREC_0249 catabolite control protein A	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      EUBREC_2561 transcriptional regulator, LacI family	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      EUBREC_0539 alanine racemase	K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG 
D      EUBREC_0253 hypothetical protein	K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor 
D      EUBREC_0495 transcriptional regulator, LacI family	K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor 
C    GntR family
D      EUBREC_0513 GntR-like protein	K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex 
D      EUBREC_2949 hypothetical protein	K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase 
D      EUBREC_2290 transcriptional regulator, GntR family	K07979 ytrA; GntR family transcriptional regulator 
C    TetR/AcrR family
C    Lrp/AsnC family
D      EUBREC_1177 probable transcriptional regulator protein, AsnC family	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
C    LuxR family
C    MarR family
C    MerR family
C    Fur family
D      EUBREC_1585 Hypothetical protein	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator 
D      EUBREC_0290 ferric uptake regulator, Fur family	K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator 
C    IclR family
C    CRP/FNR family
D      EUBREC_1222 putative transcriptional regulator	K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein 
C    Rrf2 family
D      EUBREC_0307 Hypothetical protein	K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor 
C    ArsR family
D      EUBREC_2967 probable transcriptional regulator	K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor 
D      EUBREC_3375 Hypothetical protein	K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons 
D      EUBREC_3669 transcriptional regulator (ArsR family)	K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons 
C    XRE family
D      EUBREC_0101 Hypothetical protein	K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization 
C    PadR family
D      EUBREC_1374 Hypothetical protein	K10947 K10947; PadR family transcriptional regulator 
D      EUBREC_2372 Hypothetical protein	K10947 K10947; PadR family transcriptional regulator 
D      EUBREC_3215 Hypothetical protein	K10947 K10947; PadR family transcriptional regulator 
C    Other families
D      EUBREC_2328 iron dependent repressor	K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator 
D      EUBREC_3297 Hypothetical protein	K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor 
D      EUBREC_0058 putative transcriptional repressor of the biotin operon birA	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] 
D      EUBREC_3102 Hypothetical protein	K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA 
D      EUBREC_2062 Hypothetical protein	K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB 
D      EUBREC_0713 hypothetical protein	K02647 cdaR; carbohydrate diacid regulator 
D      EUBREC_1967 redox-sensing transcriptional repressor REX	K01926 rex; redox-sensing transcriptional repressor 
D      EUBREC_1812 transcriptional repressor CodY	K03706 codY; transcriptional pleiotropic repressor 
D      EUBREC_2368 hypothetical protein	K07726 K07726; putative transcriptional regulator 
D      EUBREC_2825 hypothetical protein	K07727 K07727; putative transcriptional regulator 
D      EUBREC_3560 Hypothetical protein	K07727 K07727; putative transcriptional regulator 
D      EUBREC_3544 Hypothetical protein	K07729 K07729; putative transcriptional regulator 
D      EUBREC_3514 Hypothetical protein	K07729 K07729; putative transcriptional regulator 
B  Ribbon-helix-helix
C    CopG family
C    Other families
B  Other transcription factors
C    BglG family
C    Others
D      EUBREC_0613 Hypothetical protein	K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor 
D      EUBREC_3152 stage V sprulation protein T	K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T 
D      EUBREC_3698 stage 0 sporulation protein J	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      EUBREC_3611 chromosome partitioning parB family protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      EUBREC_0815 ParB-like partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      EUBREC_1270 chromosome partitioning protein, ParB family	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      EUBREC_2681 ParB-like partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      EUBREC_2051 chromosome partitioning protein, ParB family	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      EUBREC_2567 Hypothetical protein	K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription 
D      EUBREC_2206 arginine repressor	K03402 argR; transcriptional regulator of arginine metabolism 
D      EUBREC_2585 putative NAGC-like transcriptional regulator	K15545 mlc; transcriptional regulator of PTS gene 
D      EUBREC_1909 heat-inducible transcription repressor	K03705 hrcA; heat-inducible transcriptional repressor 
D      EUBREC_1429 hypothetical protein	K07738 nrdR; transcriptional repressor NrdR 
D      EUBREC_2255 uncharacterized conserved protein, YllB-like protein	K03925 mraZ; transcriptional regulator MraZ 
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#Last updated: June 7, 2024
#<br>Classification taken and modified from <a href="http://www.gene-regulation.com/pub/databases.html#transfac">TRANSFAC 7.0</a>