+E Ribosome biogenesis KO
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Ribosome Biogenesis - Agathobacter rectalis ATCC 33656
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D EUBREC_1500 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C EUBREC_1871 GTP-binding protein Era K03595 era; GTPase
C EUBREC_1696 GTP1/OBG subdomain containing protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C EUBREC_1946 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C EUBREC_2213 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
C EUBREC_0373 transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D EUBREC_1681 16S pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D EUBREC_0242 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D EUBREC_2343 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D EUBREC_1677 site-specific DNA-methyltransferase (adenine-specific) K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D EUBREC_1902 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D EUBREC_3705 glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D EUBREC_2254 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D EUBREC_0467 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D EUBREC_3271 tetrapyrrole (corrin/porphyrin) methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D EUBREC_2208 probable hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D EUBREC_1448 putative tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D EUBREC_1761 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D EUBREC_0416 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D EUBREC_3073 putative methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D EUBREC_2342 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D EUBREC_2208 probable hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D EUBREC_2912 hypothetical RNA methyltransferase-like protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D EUBREC_3028 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D EUBREC_1397 tRNA (uracil-5-) -methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D EUBREC_1683 ribosomal large subunit pseudouridine synthase D K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D EUBREC_0472 probable 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D EUBREC_1817 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D EUBREC_1731 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D EUBREC_2219 pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C EUBREC_0838 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C EUBREC_3382 Hypothetical protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C EUBREC_1508 16S rRNA-processing protein K02860 rimM; 16S rRNA processing protein RimM
C EUBREC_1675 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C EUBREC_1903 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C EUBREC_1500 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C EUBREC_1692 ribonuclease G and E K08301 rng; ribonuclease G [EC:3.1.26.-]
C EUBREC_1895 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C EUBREC_1447 possible ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C EUBREC_3287 DEAD/DEAH box helicase-like protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C EUBREC_1871 GTP-binding protein Era K03595 era; GTPase
C EUBREC_2338 GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C EUBREC_2287 GTP-binding protein EngA K03977 engA; GTPase
C EUBREC_1696 GTP1/OBG subdomain containing protein K03979 obgE; GTPase [EC:3.6.5.-]
C EUBREC_1512 ribosomal biogenesis GTPase K14540 rbgA; ribosome biogenesis GTPase A
C EUBREC_2422 small GTP-binding protein domain protein K03665 hflX; GTPase
B Other maturation factors
C EUBREC_0113 putative translation factor (SUA5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C EUBREC_2931 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C EUBREC_1942 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C EUBREC_1947 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
C EUBREC_0003 Hypothetical protein K14761 rlbA; ribosome-associated protein
C EUBREC_1700 iojap-related protein K09710 ybeB; ribosome-associated protein
C EUBREC_1756 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C EUBREC_1697 hypothetical protein K07574 yhbY; RNA-binding protein
C EUBREC_2942 ribosome-associated protein Y (PSrp-1) K05808 hpf; ribosome hibernation promoting factor
C EUBREC_1427 translation-associated GTPase K06942 ychF; ribosome-binding ATPase
C EUBREC_1495 predicted Zn-finger-like protein, possible nucleic acid binding K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024