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Transcription Machinery - Frankia alni
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E FRAAL6703 ATP-dependent DNA helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E FRAAL1110 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E FRAAL1072 rpoB; DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E FRAAL1073 rpoC; DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E FRAAL5229 rpoZ; DNA-directed RNA polymerase omega chain (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E FRAAL2026 rpoD; RNA polymerase essential primary sigma 70 factor K03086 rpoD; RNA polymerase primary sigma factor
E FRAAL5697 sigA; Alternative primary sigma 70 transcriptional factor K03086 rpoD; RNA polymerase primary sigma factor
E FRAAL2978 RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E FRAAL3632 putative ECF-subfamily RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E FRAAL6010 RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E FRAAL0980 putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E FRAAL0432 putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E FRAAL5435 Putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E FRAAL4137 putative ECF sub-family Sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E FRAAL3705 putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E FRAAL2077 Putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E FRAAL6091 sigE; SigE sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E FRAAL5992 sigH; SigH putative RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
C Other transcription-related factors
D RNA polymerase-associated proteins
E FRAAL5762 nusA; Transcription elongation protein nusA K02600 nusA; transcription termination/antitermination protein NusA
E FRAAL5243 Antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
E FRAAL1064 nusG; Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
E FRAAL1277 Serine/threonine-protein kinase (Switch protein/serine kinase) (Anti-sigma B factor rsbT) K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
E FRAAL1276 Negative regulator of sigma-B (Antagonist protein rsbS) (partial match) K17762 rsbS; rsbT antagonist protein RsbS
E FRAAL1275 Positive regulator of sigma-B K17763 rsbR; rsbT co-antagonist protein RsbR
E FRAAL0362 putative integral membrane protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E FRAAL4755 putative membrane phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E FRAAL4783 putative integral membrane serine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E FRAAL6493 hypothetical protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E FRAAL6574 Anti-sigma-B factor antagonist (Anti-anti-sigma-B factor) K04749 rsbV; anti-sigma B factor antagonist
E FRAAL0053 putative Anti-sigma-B factor antagonist (Anti-anti-sigma-B factor) K04749 rsbV; anti-sigma B factor antagonist
E FRAAL3888 Putative anti-sigma factor antagonist (partial) K04749 rsbV; anti-sigma B factor antagonist
E FRAAL6621 Putative anti-sigma factor antagonist K04749 rsbV; anti-sigma B factor antagonist
E FRAAL5991 rshA; Anti-sigma factor (partial match) K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
E FRAAL0832 putative anti-sigma factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
E FRAAL6723 hypothetical protein; putative ATPase domain K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Transcription elongation factors
E FRAAL6492 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
E FRAAL6213 greA; Transcription elongation factor greA (Transcript cleavage factor greA) K03624 greA; transcription elongation factor GreA
D Transcription termination factor
E FRAAL5948 rho; Transcription termination factor rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024