+F Repair protein KO #

  DNA Repair and Recombination Proteins - Frankia alni

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D FRAAL4287 ogt; Methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (MGMT) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D FRAAL0154 ada; Methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D FRAAL0101 Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E FRAAL5200 alkA; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E FRAAL6530 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E FRAAL6558 nth; Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E FRAAL6703 ATP-dependent DNA helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D FRAAL6135 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase 8-OXO-DGTPASE (mutT-like protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL3912 putative DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL0511 putative DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL1494 putative DNA hydrolase with mutT domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL3637 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL1512 Putative Nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL2463 putative MutT-family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL5514 Conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL6310 hypothetical protein; putative signal peptide K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL2080 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D FRAAL4287 ogt; Methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (MGMT) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D FRAAL0154 ada; Methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D FRAAL0101 Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D FRAAL2898 conserved hypothetical protein; putative deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E FRAAL1075 mug; DNA glycosylase, G/U mismatch-specific K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E FRAAL0102 Putative DNA polymerase related protein (partial) K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E FRAAL6229 udgB; Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E FRAAL4288 putative AraC family transcriptional regulator K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E FRAAL5200 alkA; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E FRAAL6530 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E FRAAL1196 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E FRAAL0303 Formamidopyrimidine-DNA glycosylase. K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E FRAAL5802 mutM; formamidopyrimidine DNA glycosylase, also acts on 5-formyluracil and 5-hydroxymethyluracil K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E FRAAL6736 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E FRAAL5723 end8; Endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E FRAAL6558 nth; Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E FRAAL1883 Putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E FRAAL2705 hypothetical protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ D DNA ligase E FRAAL5859 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E FRAAL4613 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E FRAAL4595 uvrA; DNA excision repair enzyme UvrABC; UvrA subunit K03701 uvrA; excinuclease ABC subunit A E FRAAL4607 uvrB; ATP-dependent DNA excision repair enzyme UvrABC, UvrB subunit K03702 uvrB; excinuclease ABC subunit B E FRAAL4593 uvrC; DNA excision repair enzyme UvrABC; UvrC subunit K03703 uvrC; excinuclease ABC subunit C E FRAAL1152 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FRAAL6038 Putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FRAAL6047 putative ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FRAAL4613 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E FRAAL5859 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F FRAAL1072 rpoB; DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F FRAAL1073 rpoC; DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F FRAAL1110 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F FRAAL5229 rpoZ; DNA-directed RNA polymerase omega chain (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F FRAAL6237 Transcription-repair coupling factor (TRCF) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E FRAAL6149 xseA; exodeoxyribonuclease VII large subunit (Exonuclease VII large subunit) K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E FRAAL6148 xseB; Exodeoxyribonuclease VII (small subunit) K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E FRAAL4407 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E FRAAL1257 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E FRAAL0004 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E FRAAL1999 putative DNA-binding protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E FRAAL6581 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E FRAAL5108 putative DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E FRAAL2709 putative DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E FRAAL0612 DNA polymerase III subunit gamma (partial match) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E FRAAL5859 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E FRAAL1152 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FRAAL6038 Putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FRAAL6047 putative ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FRAAL1840 ssb; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein E FRAAL6852 ssb; Single-strand binding protein 2 (SSB 2) (Helix-destabilizing protein 2) K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E FRAAL4186 Putative exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E FRAAL2853 putative exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E FRAAL5719 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E FRAAL2140 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E FRAAL2141 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E FRAAL2139 ruvC; Crossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E FRAAL5226 priA; primosomal protein N' (Replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E FRAAL1929 putative exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E FRAAL1930 putative exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E FRAAL5719 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E FRAAL6528 putative ATP-dependent protease, with nucleoside triP hydrolase and multiheme cytochrome domains, DNA repair protein K04485 radA; DNA repair protein RadA/Sms E FRAAL0005 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E FRAAL5811 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E FRAAL1455 conserved hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E FRAAL2016 DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) E FRAAL0610 recR; recombination and repair protein K06187 recR; recombination protein RecR E FRAAL5181 recN; DNA repair protein recN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) E FRAAL2140 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E FRAAL2141 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E FRAAL2139 ruvC; Crossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E FRAAL5583 Hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E FRAAL0458 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E FRAAL1929 putative exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E FRAAL1930 putative exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E FRAAL6052 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku E FRAAL4382 hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E FRAAL6053 conserved hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F FRAAL0009 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F FRAAL0008 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F FRAAL6579 topA; DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F FRAAL3903 putative type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F FRAAL5827 hupB; DNA-binding protein HU-beta, NS1 (HU-1) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F FRAAL2016 DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) F FRAAL0610 recR; recombination and repair protein K06187 recR; recombination protein RecR F FRAAL5859 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F FRAAL1185 putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F FRAAL0737 putative ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F FRAAL1818 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F FRAAL4595 uvrA; DNA excision repair enzyme UvrABC; UvrA subunit K03701 uvrA; excinuclease ABC subunit A F FRAAL4607 uvrB; ATP-dependent DNA excision repair enzyme UvrABC, UvrB subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D FRAAL2182 putative damage-induced DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D FRAAL5719 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA D FRAAL5703 lexA; Global regulator (repressor) for SOS regulon (LexA repressor) K01356 lexA; repressor LexA [EC:3.4.21.88] D FRAAL5181 recN; DNA repair protein recN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) D FRAAL2179 putative DNA-directed DNA polymerase K14161 imuB; protein ImuB D FRAAL2180 putative DNA polymerase III (ALPHA CHAIN) DNAE2 (DNA NUCLEOTIDYLTRANSFERASE) K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D FRAAL1840 ssb; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein D FRAAL6852 ssb; Single-strand binding protein 2 (SSB 2) (Helix-destabilizing protein 2) K03111 ssb; single-strand DNA-binding protein D FRAAL5718 recX; Regulatory protein recX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D FRAAL5721 putative ATP-dependent helicase, superfamily II with P-loop hydrolase domain and winged helix domain K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D FRAAL6135 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase 8-OXO-DGTPASE (mutT-like protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL3912 putative DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL0511 putative DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL1494 putative DNA hydrolase with mutT domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL3637 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL1512 Putative Nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL2463 putative MutT-family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL5514 Conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL6310 hypothetical protein; putative signal peptide K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FRAAL5178 nudF; ADP-ribose pyrophosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D FRAAL6419 Conserved hypothetical protein K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D FRAAL2080 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D FRAAL5699 nrdJ; Ribonucleoside-diphosphate reductase M1 chain (Vitamin B12-dependent ribonucleotide reductase) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D FRAAL4904 Vitamin B12-dependent ribonucleotide reductase (partial) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D FRAAL5757 conserved hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024