+F Repair protein KO #

  DNA Repair and Recombination Proteins - Gilliamella apicola

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D GAPWK_1847 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E GAPWK_0069 Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GAPWK_2069 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E GAPWK_0203 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D GAPWK_2241 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GAPWK_2780 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D GAPWK_1847 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D GAPWK_1526 Methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D GAPWK_1241 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E GAPWK_0069 Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GAPWK_2069 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E GAPWK_2137 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E GAPWK_2417 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E GAPWK_0203 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E GAPWK_0103 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E GAPWK_1310 hypothetical protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E GAPWK_1717 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E GAPWK_1534 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E GAPWK_0344 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E GAPWK_1913 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E GAPWK_0054 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E GAPWK_1290 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E GAPWK_0789 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E GAPWK_1415 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E GAPWK_0662 DNA polymerase III epsilon subunit K05984 cho; excinuclease Cho [EC:3.1.25.-] E GAPWK_0840 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GAPWK_0054 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E GAPWK_1913 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F GAPWK_2445 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F GAPWK_2444 DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F GAPWK_0165 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F GAPWK_0831 DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F GAPWK_1554 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E GAPWK_0821 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E GAPWK_0018 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E GAPWK_0309 DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E GAPWK_1423 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E GAPWK_0104 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E GAPWK_1992 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E GAPWK_2432 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E GAPWK_0232 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E GAPWK_1260 DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E GAPWK_0893 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E GAPWK_2354 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E GAPWK_1462 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E GAPWK_1624 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E GAPWK_0846 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D DNA ligase E GAPWK_1913 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E GAPWK_0840 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GAPWK_0929 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E GAPWK_2120 Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E GAPWK_2032 Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E GAPWK_0092 Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E GAPWK_0675 Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E GAPWK_0534 RecA protein K03553 recA; recombination protein RecA E GAPWK_1622 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E GAPWK_1621 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E GAPWK_1909 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E GAPWK_2326 Helicase PriA essential for oriC/DnaA-independent DNA replication K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E GAPWK_0756 hypothetical protein K02686 priB; primosomal replication protein N E GAPWK_1617 Primosomal replication protein N prime prime K04067 priC; primosomal replication protein N'' E GAPWK_0640 Superfamily I DNA and RNA helicase and helicase subunits K04067 priC; primosomal replication protein N'' E GAPWK_1423 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E GAPWK_0534 RecA protein K03553 recA; recombination protein RecA E GAPWK_2507 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E GAPWK_0231 DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF E GAPWK_0833 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E GAPWK_0344 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E GAPWK_1429 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E GAPWK_1292 Recombination protein RecR K06187 recR; recombination protein RecR E GAPWK_2778 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E GAPWK_0235 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC E GAPWK_1622 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E GAPWK_1621 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E GAPWK_1909 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E GAPWK_2357 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E GAPWK_1079 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F GAPWK_0286 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F GAPWK_0230 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F GAPWK_1584 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F GAPWK_0323 DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F GAPWK_0344 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F GAPWK_1429 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F GAPWK_1292 Recombination protein RecR K06187 recR; recombination protein RecR F GAPWK_1913 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F GAPWK_1901 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F GAPWK_1439 Integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha F GAPWK_0922 Integration host factor beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F GAPWK_1423 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F GAPWK_1627 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F GAPWK_1290 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F GAPWK_0789 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D GAPWK_1733 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D GAPWK_1349 Error-prone, lesion bypass DNA polymerase V (UmuC) K03502 umuC; DNA polymerase V D GAPWK_1350 Error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D GAPWK_0534 RecA protein K03553 recA; recombination protein RecA D GAPWK_0993 SOS-response repressor and protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D GAPWK_2778 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D GAPWK_0929 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D GAPWK_0533 Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D GAPWK_1058 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D GAPWK_0777 DinG family ATP-dependent helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D GAPWK_2241 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GAPWK_2780 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D GAPWK_2267 Ribonucleotide reductase of class Ia (aerobic), alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D GAPWK_2268 Ribonucleotide reductase of class Ia (aerobic), beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024