+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Gallus gallus (chicken)

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AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors E 421046 RNMT; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] E 421819 RNGTT; mRNA-capping enzyme isoform X2 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] E 771294 CDK7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E 421434 CMTR1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57] E 427537 CMTR2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 isoform X2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296] E 415459 RAMAC; RNMT-activating mini protein K18708 FAM103A1; RNMT-activating mini protein D Cap binding complex E 427379 NCBP1; nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1 E 424889 NCBP2; nuclear cap-binding protein subunit 2 isoform 1 K12883 NCBP2; nuclear cap-binding protein subunit 2 E 422214 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2 C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) E 100858636 NUDT21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 E 417844 CPSF6; cleavage and polyadenylation specificity factor subunit 6 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 E 426014 CPSF7; cleavage and polyadenylation specificity factor subunit 7 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 D Pre-mRNA cleavage factor IIm (CFIIm) E 423131 CLP1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] E 419021 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 D Cleavage and polyadenylation specificity factor (CPSF) complex E 423416 CPSF2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 E 421929 CPSF3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E 416494 CPSF4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 E 422319 EPFIP1L; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 E 422754 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 E 424753 WDR33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2 E 415942 WDR82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2 E 396019 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E 416872 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E 100858156 PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E 419410 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] D Cleavage stimulation factor (CSTF) complex E 419331 CSTF1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1 E 422258 CSTF2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2 E 421595 CSTF3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3 D U7-dependent histone pre-mRNA processing factors E 395298 SNRPN; small nuclear ribonucleoprotein-associated protein B' K11086 SNRPB; small nuclear ribonucleoprotein B and B' E 416947 SNRPD3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3 E 396180 SNRPE; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E E 417916 SNRPF; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F E 771344 SNRPG; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G E 419621 LSM10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10 E 416241 LSM11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11 E 423416 CPSF2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 E 421929 CPSF3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E 422258 CSTF2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2 E 422902 SLBP; histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein E 422901 uncharacterized protein LOC422901 K18710 SLBP; histone RNA hairpin-binding protein E 421810 CASP8AP2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2 D DRB sensitivity inducing factor (DSIF) complex E 417470 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4 E 426493 SUPT5H; transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5 D N6-methyltransferase complex E 107050363 N6-adenosine-methyltransferase catalytic subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] E 422684 METTL14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit E 421056 METTL4; methyltransferase-like protein 4 isoform X2 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72] E 431184 METTL16; RNA N6-adenosine-methyltransferase METTL16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] E 421588 WTAP; pre-mRNA-splicing regulator WTAP isoform X3 K22824 WTAP; pre-mRNA-splicing regulator WTAP E 420227 KIAA1429; protein virilizer homolog K22910 VIRMA; protein virilizer E 100859595 RBM15; putative RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15 E 770664 RBM15B; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15 E 418850 ZC3H13; zinc finger CCCH domain-containing protein 13 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 E 417701 CBLL1; E3 ubiquitin-protein ligase Hakai K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] D Poly(A) addition factors E 395878 PAPOLA; poly(A) polymerase alpha K14376 PAP; poly(A) polymerase [EC:2.7.7.19] E 100857196 PAPOLG; poly(A) polymerase gamma K14376 PAP; poly(A) polymerase [EC:2.7.7.19] E 427178 PAPD4; poly(A) RNA polymerase GLD2 isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19] E 430595 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase isoform X1 K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52] D Negative regulators of mRNA 3' end processing E 424010 BARD1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1 E 418804 RBM26; RNA-binding protein 26 isoform X1 K13192 RBM26; RNA-binding protein 26 E 415718 FTO; alpha-ketoglutarate-dependent dioxygenase FTO K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53] E 770703 ALKBH5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] E 419453 TARDBP; TAR DNA-binding protein 43 K23600 TARDBP; TAR DNA-binding protein 43 C Other processing factors D 772090 DHX40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6] D 419109 KIN; LOW QUALITY PROTEIN: DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17 D 424154 METTL8; methyltransferase-like protein 8 isoform X1 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-] D 425865 METTL22; methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] D 421845 FAM46A; putative nucleotidyltransferase FAM46A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-] D 430080 FAM46B; putative nucleotidyltransferase FAM46B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-] D 426544 TENT5C; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19] D 422282 FAM46D; putative nucleotidyltransferase FAM46C K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19] D 423399 ZC3H14; zinc finger CCCH domain-containing protein 14 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14 B mRNA surveillance and transport factors C Transport factors D EJC complex E 107050968 RBM8A; RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A E 374226 MAGOHB; protein mago nashi homolog K12877 MAGOH; protein mago nashi E 769169 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4 E 416704 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] E 416044 CCDC174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174 E 426135 CASC3; LOW QUALITY PROTEIN: protein CASC3 K14323 CASC3; protein CASC3 E 374206 SAP18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18 E 423338 PNN; pinin K13114 PNN; pinin E 416756 RNPS1; RNA-binding protein with serine-rich domain 1 isoform X2 K14325 RNPS1; RNA-binding protein with serine-rich domain 1 E 428216 SRRM1; serine/arginine repetitive matrix protein 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1 D TREX complex E 421062 THOC1; THO complex subunit 1 isoform 1 K12878 THOC1; THO complex subunit 1 E 422361 THOC2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2 E 416232 THOC3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3 E 769169 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4 E 417019 THOC5; THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5 E 416077 THOC7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7 D TREX-2 complex E 418745 PCID2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1 E 772237 SEM1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1 E 420275 ENY2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor E 422303 CETN2; centrin-2 K10840 CETN2; centrin-2 E 427104 CETN3; centrin-3 isoform X2 K16466 CETN3; centrin-3 E 424036 MCM3AP; germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48] D Nuclear pore complex E 424457 TPR; nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR E 419324 RAE1; mRNA export factor K14298 RAE1; mRNA export factor E 416119 SEC13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13 E 418093 NUP37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37 E 422120 NUP85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85 E 418240 NUP50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50 E 422639 NUP54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54 E 422183 NUP62; nucleoporin-62 C-terminal-like protein K14306 NUP62; nuclear pore complex protein Nup62 E 417501 NUP88; nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88 E 415693 NUP93; nuclear pore complex protein Nup93 K14309 NUP93; nuclear pore complex protein Nup93 E 430616 NUP98; LOW QUALITY PROTEIN: nuclear pore complex protein Nup98-Nup96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96 E 101751988 NUP107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107 E 421535 NUP133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133 E 417198 NUP188; nucleoporin NUP188 homolog K14311 NUP188; nuclear pore complex protein Nup188 E 420848 NUP153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153 E 427443 NUP155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155 E 431122 NUP160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160 E 107056600 nucleoporin NUP35 isoform X1 K14313 NUP35; nuclear pore complex protein Nup53 E 417935 NUP205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205 E 415977 NUP210; nuclear pore membrane glycoprotein 210 isoform X2 K14314 NUP210; nuclear pore complex protein Nup210 E 426146 NUP210L; nuclear pore membrane glycoprotein 210-like K14314 NUP210; nuclear pore complex protein Nup210 E 427760 NUP214; LOW QUALITY PROTEIN: nuclear pore complex protein Nup214 K14317 NUP214; nuclear pore complex protein Nup214 E 417463 POM121CL; nuclear envelope pore membrane protein POM 121 isoform X1 K14316 POM121; nuclear pore complex protein Nup121 E 418937 NUP58; nucleoporin p58/p45 K14307 NUPL1; nucleoporin p58/p45 E 420614 NUPL2; nucleoporin-like protein 2 K14321 NUPL2; nucleoporin-like protein 2 E 772284 NDC1; nucleoporin NDC1 K14315 NDC1; nucleoporin NDC1 E 100859886 SEH1L; nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1 E 776067 E3 SUMO-protein ligase RanBP2-like isoform X26 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-] E 424864 SENP2; sentrin-specific protease 2 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68] E 100859661 AAAS; aladin isoform X1 K14320 AAAS; aladin E 427104 CETN3; centrin-3 isoform X2 K16466 CETN3; centrin-3 E 417212 GLE1; nucleoporin GLE1 isoform X1 K18723 GLE1; nucleoporin GLE1 E 101748079 NXF1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor E 422346 NXT2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2 D Ran-mediated transport factors E 396193 RAN; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran E 415562 ANP32A; acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X2 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D E 420087 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B E 395637 ELAVL1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1 E 770158 ELAVL2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4 E 395634 ELAVL4; ELAV-like protein 4 K13208 ELAVL2_3_4; ELAV like protein 2/3/4 E 395636 HUC; RNA-binding protein HuC K13208 ELAVL2_3_4; ELAV like protein 2/3/4 E 416225 FAF2; FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2 E 427410 VCP; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase E 430766 TERAL2; transitional endoplasmic reticulum ATPase isoform X1 K13525 VCP; transitional endoplasmic reticulum ATPase E 423571 VCPKMT; protein-lysine methyltransferase METTL21D isoform X2 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] E 107057623 TNPO2; transportin-2 K18727 TNPO2; transportin-2 E 421192 XPO1; exportin-1 K14290 XPO1; exportin-1 E 426925 XPO7; exportin-7 K18460 XPO7; exportin-7 E 417997 RANGAP1; ran GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1 E 417522 TAF15; TATA-binding protein-associated factor 2N isoform X2 K14651 TAF15; transcription initiation factor TFIID subunit 15 D eIF4F and regulatory proteins E 424941 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform X3 K03259 EIF4E; translation initiation factor 4E E 422703 EIF4E; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E E 107054521 EIF4E1B; eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E E 395232 EIF4A2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A E 395905 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 isoform 2 K03260 EIF4G; translation initiation factor 4G E 425544 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G E 424953 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 isoform X8 K03260 EIF4G; translation initiation factor 4G E 100858349 EIF4B; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B E 417490 EIF4H; eukaryotic translation initiation factor 4H K24086 EIF4H; translation initiation factor 4H E 426773 EIF4EBP1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1 E 769479 EIF4EBP2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2 E 416961 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter E 423370 ANGEL1; protein angel homolog 1 precursor K18729 ANGEL; protein angel E 421363 ANGEL2; protein angel homolog 2 K18729 ANGEL; protein angel E 422395 FMR1; synaptic functional regulator FMR1 isoform X2 K15516 FMR; fragile X mental retardation protein E 424968 FXR1; fragile X mental retardation syndrome-related protein 1 K15516 FMR; fragile X mental retardation protein E 416246 CYFIP2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein E 418677 CYFIP1; cytoplasmic FMR1-interacting protein 1 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein E 416254 GEMIN5; gem-associated protein 5 K13133 GEMIN5; gem associated protein 5 E 422899 TACC3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3 E 415326 CPEB1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 416363 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 422832 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 423816 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 418567 DDX3X; ATP-dependent RNA helicase DDX3X K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E 424743 GIGYF2; GRB10-interacting GYF protein 2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein E 430997 PABPC1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein E 419189 PABPC1L; polyadenylate-binding protein 1-like isoform X1 K13126 PABPC; polyadenylate-binding protein E 419674 PABPC4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein E 427195 PAIP1; polyadenylate-binding protein-interacting protein 1 isoform 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1 E 416187 PAIP2B; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2 E 421171 SKIV2L; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] E 423017 DEAF1; deformed epidermal autoregulatory factor 1 homolog K23041 DEAF1; deformed epidermal autoregulatory factor 1 E 422363 MCTS1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence E 771794 DENR; density-regulated protein K24272 DENR; density-regulated protein D APOBEC1-ACF complex E 423680 A1CF; APOBEC1 complementation factor isoform X2 K24978 A1CF; APOBEC1 complementation factor D Other transport factors E 100858240 PYM1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago E 100859627 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 424136 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 417667 MSI2; RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi E 427266 DAZAP1; DAZ-associated protein 1 K14411 MSI; RNA-binding protein Musashi E 416979 MSI1; RNA-binding protein Musashi homolog 1 isoform X5 K14411 MSI; RNA-binding protein Musashi E 421694 HBS1L; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein E 430689 PELO; protein pelota homolog K06965 PELO; protein pelota E 769028 PABPN1L; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2 E 112531447 PABPN1; polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2 E 426504 DDX19B; ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] E 427073 DDX25; ATP-dependent RNA helicase DDX25 isoform X1 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7] E 425058 SARNP; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein E 429810 RCC1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation E 415392 LARP6; la-related protein 6 isoform X1 K18733 LARP6; la-related protein 6 E 420093 LARP6L; La ribonucleoprotein domain family, member 6-like K18733 LARP6; la-related protein 6 E 430546 PURA; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha E 107049543 transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta E 417974 POLDIP3; polymerase delta-interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3 E 421172 ZC3H11A; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11 E 101748015 LENG8; LOW QUALITY PROTEIN: leukocyte receptor cluster member 8 homolog K23802 LENG8; SAC3 family protein LENG8/THP3 E 415327 PATL2; protein PAT1 homolog 2 isoform X1 K24823 PATL2; protein PAT1 homolog 2 C Surveillance factors D Surveillance complex E 416182 ETF1; eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1 E 768522 GSPT2; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3 E 420119 UPF1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] E 419100 UPF2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2 E 418734 UPF3A; regulator of nonsense transcripts 3A isoform X2 K14328 UPF3; regulator of nonsense transcripts 3 E 100858231 UPF3B; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3 D Protein phosphatase 2A E 396021 PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] E 416318 PPP2CA; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] E 422858 PPP2R2C; protein phosphatase 2, regulatory subunit B, gamma isoform X2 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B E 416350 PPP2R2B; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X2 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B E 423970 PPP2R2D; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B E 419523 PPP2R2A; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B E 418670 PPP2R3B; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' E 423324 PPP2R3C; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma isoform X2 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' E 424733 PPP2R3A; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X2 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' E 423512 PPP2R5E; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' E 423460 PPP2R5C; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' E 421250 PPP2R5D; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' E 421372 PPP2R5A; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' D Other surveillance factors E 416605 SMG1; serine/threonine-protein kinase SMG1 isoform X2 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] E 425473 SMG5; protein SMG5 isoform X1 K11125 SMG5; protein SMG5 E 101750600 SMG6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-] E 424444 SMG7; protein SMG7 isoform X2 K14409 SMG7; protein SMG7 E 417630 SMG8; protein SMG8 K18734 SMG8; protein SMG8 E 424743 GIGYF2; GRB10-interacting GYF protein 2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein E 426815 SECISBP2; selenocysteine insertion sequence-binding protein 2 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2 E 101752140 DHX34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6] E 418022 GTPBP1; GTP-binding protein 1 K24887 GTPBP1; GTP-binding protein 1 C Factors involved in mRNA localization D Cargo complex E 427350 PUM3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6 E 396237 MYO5A; unconventional myosin-Va K10357 MYO5; myosin V E 430027 MYO5C; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V E 430317 MYO5B; unconventional myosin-Va K10357 MYO5; myosin V E 415990 BICD2; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D E 427919 BICD1; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D D Factors that have mRNA localization signals E 776816 actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1 E 415296 ACTG1; actin, cytoplasmic type 5 K05692 ACTB_G1; actin beta/gamma 1 E 396526 ACTB; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1 E 396217 MBP; myelin basic protein K17269 MBP; myelin basic protein E 420519 VIM; vimentin K07606 VIM; vimentin E 396212 MT4L; metallothionein K14739 MT1_2; metallothionein 1/2 E 770592 MT3; metallothionein-3 K14739 MT1_2; metallothionein 1/2 E 420332 MYC; myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein E 396132 GDF3; embryonic growth/differentiation factor 1 K05495 GDF1; growth differentiation factor 1 E 395792 TBX6; T-box-containing protein TBX6L K10180 TBX6; T-box protein 6 E 100857342 NANOS1; nanos homolog 1 K18741 NANOS1; protein nanos 1 D Trans-acting binding proteins E 424551 FUBP1; far upstream element-binding protein 1 K13210 FUBP; far upstream element-binding protein E 417184 FUBP3; far upstream element-binding protein 3 K13210 FUBP; far upstream element-binding protein E 373963 EEF1A1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha E 419244 EEF1A2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha E 420627 HNRNPA2B1; heterogeneous nuclear ribonucleoproteins A2/B1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1 E 107055138 HAX1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1 E 424793 AGFG1; arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1 E 419213 STAU1; double-stranded RNA-binding protein Staufen homolog 1 K17597 STAU; double-stranded RNA-binding protein Staufen E 420184 STAU2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen E 420617 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3 E 420098 PTBP1; polypyrimidine tract-binding protein 1 K13218 PTBP1; polypyrimidine tract-binding protein 1 E 415326 CPEB1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 416363 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 422832 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 423816 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein D Other mRNA localization factors E 422395 FMR1; synaptic functional regulator FMR1 isoform X2 K15516 FMR; fragile X mental retardation protein E 424968 FXR1; fragile X mental retardation syndrome-related protein 1 K15516 FMR; fragile X mental retardation protein E 416246 CYFIP2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein E 418677 CYFIP1; cytoplasmic FMR1-interacting protein 1 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein E 426023 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2 E 420965 PCBP2; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4 E 100858906 PCBP3; poly(rC)-binding protein 3 isoform X15 K21444 PCBP3_4; poly(rC)-binding protein 3/4 E 100859674 PCBP4; poly(rC)-binding protein 4 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4 E 426151 CAPRIN1; caprin-1 K18743 CAPRIN1; caprin-1 E 418141 CAPRIN2; caprin-2 isoform X1 K18744 CAPRIN2; caprin-2 E 386575 YBX1; nuclease-sensitive element-binding protein 1 K09276 YBX1; Y-box-binding protein 1 C mRNA cycle factors D Common to processing body (P body) and stress granule E 424778 XRN1; 5'-3' exoribonuclease 1 isoform X2 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] E 419628 AGO3; protein argonaute-3 K11593 ELF2C; eukaryotic translation initiation factor 2C E 428222 AGO1; protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C E 419629 AGO4; protein argonaute-4 K11593 ELF2C; eukaryotic translation initiation factor 2C E 424941 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform X3 K03259 EIF4E; translation initiation factor 4E E 422703 EIF4E; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E E 107054521 EIF4E1B; eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E E 420119 UPF1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] E 418567 DDX3X; ATP-dependent RNA helicase DDX3X K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E 419783 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] E 420082 MEX3D; RNA-binding protein MEX3D K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] E 101747646 MEX3A; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] E 107054196 MEX3B; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] E 426636 FASTK; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8] E 415781 LSM14A; protein LSM14 homolog A K18749 LSM14; protein LSM14 E 771330 LSM14B; protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14 E 426023 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2 E 386575 YBX1; nuclease-sensitive element-binding protein 1 K09276 YBX1; Y-box-binding protein 1 E 420701 LIMD1; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein E 769595 WTIP; Wilms tumor protein 1-interacting protein K16682 AJUBA; LIM domain-containing protein E 419872 MOV10; putative helicase MOV-10 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] E 419688 PNRC2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2 E 427218 TNPO1; transportin-1 isoform X2 K18752 TNPO1; transportin-1 E 416605 SMG1; serine/threonine-protein kinase SMG1 isoform X2 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] E 425473 SMG5; protein SMG5 isoform X1 K11125 SMG5; protein SMG5 E 101750600 SMG6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-] E 424444 SMG7; protein SMG7 isoform X2 K14409 SMG7; protein SMG7 E 101751828 ZFP36L1; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor E 107052930 ZFP36L2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor E 421786 LIN28B; protein lin-28 homolog B K18754 LIN28; protein lin-28 E 428206 LIN28A; protein lin-28 homolog A K18754 LIN28; protein lin-28 E 422878 HTT; huntingtin isoform X2 K04533 HD; huntingtin E 418142 IPO8; importin-8 isoform X1 K18755 IPO8; importin-8 E 423604 BICC1; protein bicaudal C homolog 1 K18756 BICC1; protein bicaudal C E 100859627 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 424136 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 424542 PRKACB; cAMP-dependent protein kinase catalytic subunit beta isoform X7 K04345 PKA; protein kinase A [EC:2.7.11.11] E 416258 LARP1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1 E 422500 LARP1B; la-related protein 1B isoform X3 K18757 LARP1; la-related protein 1 E 416877 ATXN2; ataxin-2 isoform X1 K23625 ATXN2_2L; ataxin 2/2L D P-body specific factors E 769972 DCP2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] E 415992 DCP1A; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-] E 772197 DCP1B; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] E 426775 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E 416040 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E 420128 LSM4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E 420751 LSM5; U6 snRNA-associated Sm-like protein LSm5 isoform a K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E 422466 LSM6; U6 snRNA-associated Sm-like protein LSm6 isoform 1 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E 420055 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E 417765 LSM8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 E 423484 KLC1; kinesin light chain 1 isoform X7 K10407 KLC; kinesin light chain E 769965 KLC4; kinesin light chain 4 isoform X1 K10407 KLC; kinesin light chain E 396237 MYO5A; unconventional myosin-Va K10357 MYO5; myosin V E 430027 MYO5C; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V E 430317 MYO5B; unconventional myosin-Va K10357 MYO5; myosin V E 396426 TUBA8B; tubulin alpha-2 chain K07374 TUBA; tubulin alpha E 416695 tubulin alpha chain K07374 TUBA; tubulin alpha E 418166 TUBA8A; tubulin alpha-4 chain K07374 TUBA; tubulin alpha E 421169 TUBA3E; tubulin alpha-8 chain K07374 TUBA; tubulin alpha E 425049 tubulin alpha-3 chain K07374 TUBA; tubulin alpha E 100857247 TUBA4A; tubulin alpha-5 chain-like K07374 TUBA; tubulin alpha E 416694 TUBAL3; tubulin alpha-3 chain K07374 TUBA; tubulin alpha E 100859737 TUBA1A1; tubulin alpha-1B chain K07374 TUBA; tubulin alpha E 429035 TUBA1C; tubulin alpha-1 chain K07374 TUBA; tubulin alpha E 100857858 TUBA1C; tubulin alpha-1C chain K07374 TUBA; tubulin alpha E 100857214 TUBA4B; tubulin alpha-4A chain K07374 TUBA; tubulin alpha E 415326 CPEB1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 416363 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 422832 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 423816 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 416254 GEMIN5; gem-associated protein 5 K13133 GEMIN5; gem associated protein 5 E 422899 TACC3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3 E 416570 TNRC6A; trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein E 418010 TNRC6B; trinucleotide repeat-containing gene 6B protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein E 417348 TNRC6C; trinucleotide repeat-containing gene 6C protein isoform X7 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein E 100858397 CNOT1; CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E 417851 CNOT2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E 417936 CNOT4; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] E 422508 CNOT6L; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E 416293 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E 422733 CNOT7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 416255 CNOT8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 415782 uncharacterized protein KIAA0355 homolog K26671 GARRE1; granule associated Rac and RHOG effector protein 1 E 424934 DIS3L2; DIS3-like exonuclease 2 isoform X1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] E 429172 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] E 418926 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 E 395225 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG E 396295 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG E 417992 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG E 419781 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG E 419932 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG E 415950 BTG1L; protein BTG1 K14443 TOB; protein Tob/BTG E 416961 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter E 426566 PATL1; protein PAT1 homolog 1 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 E 415294 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3 E 415656 EDC4; enhancer of mRNA-decapping protein 4 isoform X2 K12616 EDC4; enhancer of mRNA-decapping protein 4 E 419100 UPF2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2 E 418734 UPF3A; regulator of nonsense transcripts 3A isoform X2 K14328 UPF3; regulator of nonsense transcripts 3 E 100858231 UPF3B; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3 E 428445 TRIM71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] E 395147 EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1] E 100857604 ZAR1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1 E 771155 ZAR1L; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1 E 419238 YTHDF1; YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein E 419583 YTHDF2; YTH domain-containing family protein 2 isoform X1 K20102 YTHDF; YTH domain-containing family protein E 421145 YTHDF3; YTH domain-containing family protein 3 K20102 YTHDF; YTH domain-containing family protein D Stress granule specific factors E 771327 TIA1; nucleolysin TIA-1 K13201 TIA1; nucleolysin TIA-1/TIAR E 112529920 TIAL1; nucleolysin TIAR isoform X2 K13201 TIA1; nucleolysin TIA-1/TIAR E 430997 PABPC1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein E 419189 PABPC1L; polyadenylate-binding protein 1-like isoform X1 K13126 PABPC; polyadenylate-binding protein E 419674 PABPC4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein E 419213 STAU1; double-stranded RNA-binding protein Staufen homolog 1 K17597 STAU; double-stranded RNA-binding protein Staufen E 420184 STAU2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen E 422395 FMR1; synaptic functional regulator FMR1 isoform X2 K15516 FMR; fragile X mental retardation protein E 424968 FXR1; fragile X mental retardation syndrome-related protein 1 K15516 FMR; fragile X mental retardation protein E 395637 ELAVL1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1 E 416265 G3BP1; ras GTPase-activating protein-binding protein 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3] E 422576 G3BP2; ras GTPase-activating protein-binding protein 2 isoform X2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 E 425042 EIF2A; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A E 769783 EIF3B; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B E 395232 EIF4A2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A E 416704 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] E 100858349 EIF4B; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B E 395905 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 isoform 2 K03260 EIF4G; translation initiation factor 4G E 425544 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G E 424953 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 isoform X8 K03260 EIF4G; translation initiation factor 4G E 418605 RPS6KA3; ribosomal protein S6 kinase alpha-3 isoform X3 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] E 421570 RPS6KA2; ribosomal protein S6 kinase alpha-2 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] E 422273 RPS6KA6; ribosomal protein S6 kinase alpha-6 isoform X2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] E 386579 RPS6KA1L; ribosomal protein S6 kinase 2 alpha K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] E 417044 RACK1; receptor of activated protein C kinase 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein E 417287 TRAF2; TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] E 101748079 NXF1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor E 418823 TDRD3; tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3 E 420457 LARP4B; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4 E 426876 LARP4; la-related protein 4 K18763 LARP4; la-related protein 4 B mRNA degradation factors C 5'-3' decay D Decapping complex E 415992 DCP1A; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-] E 772197 DCP1B; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] E 769972 DCP2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] E 419783 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] E 415294 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3 E 415656 EDC4; enhancer of mRNA-decapping protein 4 isoform X2 K12616 EDC4; enhancer of mRNA-decapping protein 4 E 426566 PATL1; protein PAT1 homolog 1 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 D Lsm complex E 426775 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E 416040 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E 420128 LSM4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E 420751 LSM5; U6 snRNA-associated Sm-like protein LSm5 isoform a K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E 422466 LSM6; U6 snRNA-associated Sm-like protein LSm6 isoform 1 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E 420055 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E 417765 LSM8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 D 5' exonucleases E 424778 XRN1; 5'-3' exoribonuclease 1 isoform X2 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] E 421236 XRN2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] D Other 5'-3' decay factors E 419716 DCPS; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] E 417427 HELZ; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] C 3'-5' decay D Core exosome factors E 423844 EXOSC1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4 E 417182 EXOSC2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4 E 423626 EXOSC3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40 E 100858931 EXOSC5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46 E 107052160 EXOSC6; LOW QUALITY PROTEIN: exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3 E 420704 EXOSC7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42 E 100858560 EXOSC8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43 E 619530 EXOSC9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45 D Exosome cofactors E 418821 DIS3; exosome complex exonuclease RRP44 isoform X2 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] E 100857630 DIS3L; DIS3-like exonuclease 1 isoform X2 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-] E 419454 EXOSC10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] E 421267 C1D; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1 E 415811 MPHOSPH6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type E 422427 DDX60; probable ATP-dependent RNA helicase DDX60 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7] D TRAMP complex E 770425 PAPD7; non-canonical poly(A) RNA polymerase PAPD7 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] E 415733 PAPD5; non-canonical poly(A) RNA polymerase PAPD5 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] E 426807 ZCCHC7; zinc finger CCHC domain-containing protein 7 isoform X1 K12597 AIR1_2; protein AIR1/2 E 427137 SKIV2L2; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] D Ski complex E 421171 SKIV2L; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] E 427114 TTC37; tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3 E 415359 WDR61; WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61 D Ccr4-NOT complex E 422508 CNOT6L; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E 416293 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E 100858397 CNOT1; CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E 417851 CNOT2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E 417936 CNOT4; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] E 422733 CNOT7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 416255 CNOT8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 424215 CNOT9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9 E 420669 CNOT10; CCR4-NOT transcription complex subunit 10 K12607 CNOT10; CCR4-NOT transcription complex subunit 10 D Pan complex E 429172 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] E 418926 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 D Other 3'-5' decay factors E 416423 PARN; poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] E 428595 PNLDC1; poly(A)-specific ribonuclease PNLDC1 isoform X2 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] E 425032 DHX36; ATP-dependent RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] E 395225 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG E 396295 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG E 417992 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG E 419781 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG E 419932 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG E 415950 BTG1L; protein BTG1 K14443 TOB; protein Tob/BTG E 404779 NOCT; nocturnin K18764 NOCT; nocturnin [EC:3.1.3.108] E 422629 ERI1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-] E 427000 ERI2; ERI1 exoribonuclease 2 isoform X2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-] E 419716 DCPS; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] E 107054443 PDE12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-] E 427490 IREB2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2 E 417427 HELZ; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] E 419265 HELZ2; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6] E 423404 NRDE2; protein NRDE2 homolog isoform X1 K26109 NRDE2; nuclear exosome regulator NRDE2 E 423559 SAMD4A; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug E 101750533 SAMD4B; protein Smaug homolog 2 K27396 SMG; protein Smaug E 427233 FOCAD; focadhesin K27498 FOCAD; focadhesin C Other degradation factors D RNases E 418963 ZC3H12C; probable ribonuclease ZC3H12C isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] E 419618 ZC3H12A; endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] E 422175 ZC3H12B; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] E 421623 ZC3H12D; probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases E 420911 DROSHA; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] E 419761 REXO2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-] D Helicases D Other RNA degradosome components E 396017 ENO1; alpha-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E 395689 ENO2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E 421206 PNPT1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] E 769850 PFKL; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] E 374064 PFKM; ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] E 428411 PFKP; ATP-dependent 6-phosphofructokinase, platelet type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E 416183 HSPA9; stress-70 protein, mitochondrial precursor K04043 dnaK; molecular chaperone DnaK E 424059 HSPD1; 60 kDa heat shock protein, mitochondrial precursor K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Others D Bacterial Small RNA Regulators B Archeal mRNA degradation factors C Exosome components D Core exosome E 417182 EXOSC2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4 E 423844 EXOSC1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4 D Cofactors E 420704 EXOSC7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42 D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024