+D
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Transfer RNA Biogenesis - Geobacter sulfurreducens PCA
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D GSU0134 ribonuclease Z-related hydrolase K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D GSU1049 ribonuclease Z-related hydrolase K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D GSU1581 ccaA; adenosine-specific tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D GSU1684 protein of unknown function UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D GSU1680 protein of unknown function DUF101 K24956 ZBTB8OS; protein archease
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D GSU1219 gltX; glutamyl-tRNA synthetase, non-discriminating K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GSU1460 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D GSU3136 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D GSU2209 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D GSU2232 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D GSU3366 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D GSU1812 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D GSU2271 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D GSU1463 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D GSU0148 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D GSU1156 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D GSU1515 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D GSU0037 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D GSU3365 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D GSU2045 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D GSU1659 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D GSU1519 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D GSU1520 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D GSU1139 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D GSU1833 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D GSU0525 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D GSU1423 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D GSU0521 trmB; tRNA (N7-methyl-G46)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D GSU2877 truA; tRNA pseudouridines 38,39,40 synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D GSU1591 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D GSU0520 truD; tRNA pseudouridine 13 synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D GSU2570 nifS-2; nitrogen fixation iron-sulfur cluster assembly cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GSU2011 nifS-1; nitrogen fixation iron-sulfur cluster assembly cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GSU2786 dndA; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D GSU2000 miaA; tRNA (N6-dimethylallyl-A37)-dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D GSU3465 mnmE; tRNA (5-carboxymethylaminomethyl-U34) modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D GSU3464 gidA; tRNA (5-carboxymethylaminomethyl-U34)-formylglycinetransferase/reductase K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D GSU0607 selD; selenide, water dikinase, selenocysteine-containing K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D GSU3468 rnpA; ribonuclease P, protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D GSUR0060 rnpB; RNase P, RNA component K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
D GSU0134 ribonuclease Z-related hydrolase K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D GSU1049 ribonuclease Z-related hydrolase K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D GSU1795 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D GSU0443 ribonuclease D, putative K03684 rnd; ribonuclease D [EC:3.1.13.5]
C CCA adding factors
D GSU1581 ccaA; adenosine-specific tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
D GSU1684 protein of unknown function UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
D GSU0035 2',5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
B tRNA transport factors
C tRNA export factors
D GSU1644 ABC transporter, ATP-binding protein, duplicated domain protein K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D GSU2209 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D GSU1460 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D GSU1139 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D GSU1833 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D GSU1515 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D GSU3136 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D GSU2271 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D GSU0148 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D GSU2045 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D GSU2232 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D GSU0037 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D GSU1463 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D GSU0578 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D GSU0579 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D GSU3365 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D GSU1219 gltX; glutamyl-tRNA synthetase, non-discriminating K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GSU3366 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D GSU1812 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D GSU1519 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D GSU1520 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D GSU1659 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D GSU1156 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D GSU1329 yadB; glutamyl-Q-tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
C Trans-editing factors
D GSU0525 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
B tRNA modification factors
C Deaminases
D GSU0065 tadA; tRNA (adenosine-34) deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D GSU1005 nifR3; TIM barrel oxidoreductase NifR3 K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
D GSU2198 miaB; tRNA (2-methylthio-N6-dimethylallyl-A37) methylthiotransferase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D GSU2568 mtaB; tRNA (2-methylthio-N6-threonylcarbamyl-A37) methylthiotransferase K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
C Methyltransferases
D GSU1475 trmJ; tRNA (2'O-methyl-C32/U32)-methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D GSU2547 trmFO; tRNA (5-methyl-U54)-methylenetransferase/reductase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D GSU0521 trmB; tRNA (N7-methyl-G46)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D GSU0646 trmD; tRNA (N1-methyl-G37)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D GSU3465 mnmE; tRNA (5-carboxymethylaminomethyl-U34) modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D GSU1197 SpoU-class rRNA methyltransferase CspR K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
C Psudouridine synthases
D GSU2877 truA; tRNA pseudouridines 38,39,40 synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D GSU1591 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D GSU3160 truC; tRNA pseudouridine 65 synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D GSU0520 truD; tRNA pseudouridine 13 synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D GSU2569 mnmA; tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D GSU0127 ttcA; tRNA (2-thio-C32)-thioltransferase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D GSU2570 nifS-2; nitrogen fixation iron-sulfur cluster assembly cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GSU2011 nifS-1; nitrogen fixation iron-sulfur cluster assembly cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GSU2786 dndA; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Other tRNA modification factors
D GSU3464 gidA; tRNA (5-carboxymethylaminomethyl-U34)-formylglycinetransferase/reductase K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D GSU2000 miaA; tRNA (N6-dimethylallyl-A37)-dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D GSU2620 queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D GSU0483 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D GSU1720 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D GSU1721 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D GSU1081 protein of unknown function DUF208 K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D GSU0607 selD; selenide, water dikinase, selenocysteine-containing K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D GSU1190 selU; tRNA (5-carboxymethylaminomethyl-2-seleno-U34)-2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D GSU1175 tgt-1; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D GSU2619 tgt-2; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D GSU1810 tRNA(Ile) lysidine-34 synthase, putative K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D GSU1913 yeaZ; nucleoid maintenance protease YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D GSU1865 ygjD; tRNA (N6-threonylcarbamyl-A37) modification enzyme K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D GSU1800 yjeE; nucleoid maintenance ATPase YjeE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D GSU3288 YgdL family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
B tRNA degradation factors
C GSU1485 rnr; exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C GSU1593 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C GSU2472 toxin, PIN family K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024