+E Messenger RNA Biogenesis KO
#
Messenger RNA Biogenesis - Lacticaseibacillus paracasei BL23
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E LCABL_18210 rnc; Ribonuclease 3 (Ribonuclease III) (RNase III) K03685 rnc; ribonuclease III [EC:3.1.26.3]
E LCABL_15290 mRNA degradation ribonuclease J1/J2, metallo-beta-lactamase superfamily enzyme K12574 rnj; ribonuclease J [EC:3.1.-.-]
E LCABL_15560 Predicted hydrolase of the metallo-beta-lactamase superfamily K12574 rnj; ribonuclease J [EC:3.1.-.-]
E LCABL_11530 YSH1; Predicted exonuclease of the beta-lactamase fold K12574 rnj; ribonuclease J [EC:3.1.-.-]
E LCABL_10370 ymdA; YmdA (Putative uncharacterized protein ymdA) K18682 rny; ribonucrease Y [EC:3.1.-.-]
E LCABL_11390 rnr; Exoribonuclease R, RNase II family K12573 rnr; ribonuclease R [EC:3.1.13.1]
E LCABL_19430 cbf; CMP-binding factor K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D Helicases
E LCABL_27300 srmB; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E LCABL_08440 srmB; ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
E LCABL_15960 recQ1; ATP-dependent DNA helicase (RecQ) K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
E LCABL_12450 recQ1; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E LCABL_11330 eno; Enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate hydro-lyase) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E LCABL_15840 pfkA; 6-phosphofructokinase (Phosphofructokinase) (Phosphohexokinase) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E LCABL_17780 dnaK; Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) K04043 dnaK; molecular chaperone DnaK
E LCABL_24200 groL; 60 kDa chaperonin (Protein Cpn60) (groEL protein) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
E LCABL_27820 ppk; Polyphosphate kinase (Polyphosphoric acid kinase) (ATP-polyphosphate phosphotransferase) K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
E LCABL_10730 yjiE; UPF0042 protein yjiE K06958 rapZ; RNase adapter protein RapZ
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024