+E Transcription factors KO
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Transcription Factors - Lactobacillus gasseri ATCC 33323
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
C LysR family
D LGAS_0048 transcriptional regulator, LysR family K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
C DeoR family
D LGAS_0491 lactose transport regulator K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D LGAS_1728 lactose transport regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D LGAS_0561 lactose transport regulator K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
C LacI family
D LGAS_0436 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D LGAS_1323 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D LGAS_1780 transcriptional regulator, LacI family K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
C GntR family
D LGAS_0534 transcriptional regulator, GntR family K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D LGAS_0188 transcriptional regulator, GntR family K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA
D LGAS_0191 transcriptional regulator, GntR family K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D LGAS_1535 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D LGAS_0114 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D LGAS_1426 Transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D LGAS_1435 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
C TetR/AcrR family
C Lrp/AsnC family
C LuxR family
C MarR family
D LGAS_1010 Transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
C Fur family
C IclR family
C CRP/FNR family
D LGAS_1887 FNR/CRP family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D LGAS_0984 Crp-like transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
C ArsR family
D LGAS_0328 transcriptional regulator, ArsR family K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D LGAS_1873 Predicted transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D LGAS_0210 Adenine/guanine phosphoribosyltransferase related PRPP-binding protein K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D LGAS_0403 AT-rich DNA-binding protein K01926 rex; redox-sensing transcriptional repressor
D LGAS_1465 Predicted transcriptional regulator K07727 K07727; putative transcriptional regulator
D LGAS_0576 Transcriptional regulator, xre family K07729 K07729; putative transcriptional regulator
D LGAS_0638 Transcriptional regulator, xre family K07729 K07729; putative transcriptional regulator
D LGAS_0020 Predicted transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
D LGAS_1756 transcriptional antiterminator, BglG family K03488 licT; beta-glucoside operon transcriptional antiterminator
D LGAS_1670 transcriptional antiterminator, BglG family K03488 licT; beta-glucoside operon transcriptional antiterminator
C Others
D LGAS_1741 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LGAS_1743 Effector of nucleoid occlusion Noc K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LGAS_0499 transcriptional antiterminator, BglG family K02531 lacT; transcriptional antiterminator
D LGAS_0341 transcriptional antiterminator, BglG family K02531 lacT; transcriptional antiterminator
D LGAS_0820 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D LGAS_1309 Central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator
D LGAS_1091 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D LGAS_1086 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D LGAS_1418 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domain K07738 nrdR; transcriptional repressor NrdR
D LGAS_1210 hypothetical protein, MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0