+E Ribosome biogenesis KO
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Ribosome Biogenesis - Lactobacillus gasseri ATCC 33323
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D LGAS_0780 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C LGAS_1118 GTPase K03595 era; GTPase
C LGAS_0872 Predicted GTPase K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C LGAS_0811 Transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA
C LGAS_0750 Transcription termination factor K03625 nusB; transcription antitermination protein NusB
C LGAS_0355 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D LGAS_1222 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D LGAS_0208 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D LGAS_0762 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D LGAS_0365 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D LGAS_1178 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D LGAS_1744 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D LGAS_1209 SAM-dependent methyltransferase for cell envelope biogenesis K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D LGAS_0376 Predicted methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D LGAS_0755 Predicted rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D LGAS_0340 rRNA methylase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D LGAS_0070 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D LGAS_0755 Predicted rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D LGAS_1493 tRNA (uracil-5-)-methyltransferase related enzyme K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D LGAS_0888 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D LGAS_1014 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LGAS_1352 Pseudouridylate synthase, 23S RNA-specific K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LGAS_1453 Pseudouridylate synthase, 23S RNA-specific K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C LGAS_0380 Acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C LGAS_1045 Acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C LGAS_0787 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C LGAS_0855 [LSU ribosomal protein L11P]-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C LGAS_0780 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C LGAS_0423 RNase H-like ribonuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C LGAS_0339 hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C LGAS_0265 Superfamily II DNA and RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C LGAS_0420 Superfamily II DNA and RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C LGAS_1118 GTPase K03595 era; GTPase
C LGAS_0765 Predicted GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C LGAS_0893 Predicted GTPase K03977 engA; GTPase
C LGAS_0872 Predicted GTPase K03979 obgE; GTPase [EC:3.6.5.-]
C LGAS_0913 Ras superfamily GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A
C LGAS_1697 GTPase K03665 hflX; GTPase
C LGAS_1404 Predicted GTPase K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C LGAS_1246 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C LGAS_0857 Guanosine polyphosphate pyrophosphohydrolase/synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C LGAS_0815 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C LGAS_0810 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C LGAS_0003 S4-like RNA binding protein K14761 rlbA; ribosome-associated protein
C LGAS_1401 Iojap family protein K09710 ybeB; ribosome-associated protein
C LGAS_1119 Predicted metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
C LGAS_1332 sigma 54 modulation protein / SSU ribosomal protein S30P K05808 hpf; ribosome hibernation promoting factor
C LGAS_1739 Predicted GTPase, probable translation factor K06942 ychF; ribosome-binding ATPase
C LGAS_1399 Predicted metal-binding protein, inactivated metal-binding site K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024