+E Ribosome biogenesis KO
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Ribosome Biogenesis - Lactococcus lactis subsp. cremoris MG1363
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D llmg_1753 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C llmg_0371 eraL; GTP-binding protein era homolog K03595 era; GTPase
C llmg_0915 obgL; GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C llmg_1796 nusA; transcription elongation factor nusA K02600 nusA; transcription termination/antitermination protein NusA
C llmg_1878 nusB; transcription termination protein nusB K03625 nusB; transcription antitermination protein NusB
C llmg_2388 nusG; transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D llmg_2518 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D llmg_1882 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D llmg_2081 sunL; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D llmg_1059 rsmC; Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D llmg_2444 conserved hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D llmg_0111 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D llmg_1109 gidB; glucose-inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D llmg_1681 mraW; S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D llmg_0419 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D llmg_1687 conserved hypothetical protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D llmg_2246 rrmA; putative rRNA (guanine-N1-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D llmg_1124 conserved hypothetical protein K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D llmg_2063 trmH; tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D llmg_2418 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D llmg_0263 putative methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D llmg_0194 conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D llmg_1687 conserved hypothetical protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D llmg_1315 putative RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D llmg_1194 rluB; pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D llmg_1524 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D llmg_0384 rluE; ribosomal large subunit pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D llmg_2396 rluA; ribosomal large subunit pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D llmg_1100 rluC; ribosomal large subunit pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C llmg_0308 rimI2; Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C llmg_0307 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C llmg_0936 rimM; 16S rRNA processing protein rimM K02860 rimM; 16S rRNA processing protein RimM
C llmg_0110 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C llmg_1753 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C llmg_0151 putative Hollyday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C llmg_2039 Ribonuclease III (EC 3.1.26.3) (RNase III) K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C llmg_0369 rheA; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C llmg_0433 rheB; ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C llmg_0371 eraL; GTP-binding protein era homolog K03595 era; GTPase
C llmg_2193 conserved hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C llmg_1805 pgdA; putative phosphoglycerate dehydrogenase K03977 engA; GTPase
C llmg_0915 obgL; GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
C llmg_1175 conserved hypothetical protein K14540 rbgA; ribosome biogenesis GTPase A
C llmg_0233 hflX; GTP-binding protein hflX K03665 hflX; GTPase
C llmg_0231 conserved hypothetical protein K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C llmg_0562 putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C llmg_0113 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C llmg_1791 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C llmg_1797 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C llmg_2228 conserved hypothetical protein K14761 rlbA; ribosome-associated protein
C llmg_0239 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
C llmg_1487 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
C llmg_0235 conserved hypothetical protein K07574 yhbY; RNA-binding protein
C llmg_0616 yfiA; Putative Sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C llmg_0007 GTP-dependent nucleic acid-binding protein K06942 ychF; ribosome-binding ATPase
C llmg_0907 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024