+F Repair protein KO #

  DNA Repair and Recombination Proteins - Lactococcus lactis subsp. cremoris MG1363

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D llmg_0498 ogt; 6-O-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E llmg_0244 ung; Ung protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E llmg_1717 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E llmg_1501 nth; putative endonuclease III (DNA repair) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D llmg_1444 mutX; ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D llmg_2510 mutT; putative mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D llmg_2114 ps428; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D llmg_0191 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D llmg_0816 ps325; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D llmg_0498 ogt; 6-O-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D llmg_0499 adaA; methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] C BER (base exicision repair) D DNA glycosylases E llmg_0244 ung; Ung protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E llmg_1717 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E llmg_0373 fpg; Fpg protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E llmg_1501 nth; putative endonuclease III (DNA repair) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E llmg_1765 exoA; 3'-exo-deoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E llmg_0606 recJ; single strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E llmg_0444 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E llmg_2425 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E llmg_2008 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E llmg_0534 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E llmg_1718 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E llmg_1445 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E llmg_2425 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E llmg_0444 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F llmg_1982 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F llmg_1981 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F llmg_2354 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F llmg_0608 rpoE; DNA-directed RNA polymerase delta chain K03048 rpoE; DNA-directed RNA polymerase subunit delta F llmg_2154 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F llmg_0013 mfd; Transcription-repair coupling factor (TRCF) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E llmg_2491 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS E llmg_0778 mutS; DNA mismatch repair protein mutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E llmg_2489 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E llmg_1692 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E llmg_1691 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E llmg_0483 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E llmg_2409 polC; DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E llmg_0002 dnaN; beta subunit of DNA polymerase III K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E llmg_0768 holA; putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E llmg_0416 holB; DNA polymerase III K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E llmg_1537 dnaQ; DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E llmg_2478 dnaX; DNA polymerase III subunits gamma / tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E llmg_0444 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E llmg_1445 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E llmg_2126 ps416; Single-strand binding protein ssB K03111 ssb; single-strand DNA-binding protein E llmg_2474 ssbB; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein E llmg_0409 ssbA; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E llmg_1922 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E llmg_0374 recA; recombination protein A K03553 recA; recombination protein RecA E llmg_2488 ruvA; holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E llmg_2487 ruvB; holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E llmg_2153 priA; Primosomal protein N' (Replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E llmg_1133 sbcC; nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E llmg_1132 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E llmg_0374 recA; recombination protein A K03553 recA; recombination protein RecA E llmg_2343 radA; putative ATP-dependent protease K04485 radA; DNA repair protein RadA/Sms E llmg_2229 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E llmg_2523 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E llmg_0606 recJ; single strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E llmg_0067 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) E llmg_0359 recR; Recombination protein recR K06187 recR; recombination protein RecR E llmg_1685 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N) E llmg_0512 recU; putative recombination protein U K03700 recU; recombination protein U E llmg_2488 ruvA; holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E llmg_2487 ruvB; holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E llmg_0004 rexA; ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E llmg_0003 rexB; ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E llmg_1133 sbcC; nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E llmg_1132 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F llmg_1451 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F llmg_1631 gyrB; topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F llmg_1374 ltrE; LtrE protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F llmg_1272 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F llmg_0496 hllA; HU-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F llmg_1661 hslB; HU-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F llmg_0606 recJ; single strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F llmg_0067 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) F llmg_0359 recR; Recombination protein recR K06187 recR; recombination protein RecR F llmg_0444 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F llmg_1992 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F llmg_2008 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F llmg_0534 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D llmg_2305 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D llmg_0374 recA; recombination protein A K03553 recA; recombination protein RecA D llmg_1685 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N) D llmg_2126 ps416; Single-strand binding protein ssB K03111 ssb; single-strand DNA-binding protein D llmg_2474 ssbB; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein D llmg_0409 ssbA; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein D llmg_2466 recX; Regulatory protein recX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D llmg_2021 dinG; Probable ATP-dependent helicase dinG homolog K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D llmg_1444 mutX; ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D llmg_2510 mutT; putative mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D llmg_2114 ps428; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D llmg_0191 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D llmg_0816 ps325; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D llmg_1543 nrdE; ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D llmg_1544 nrdF; ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D llmg_1825 conserved hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024