+F Repair protein KO
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DNA Repair and Recombination Proteins - Lactococcus lactis subsp. cremoris MG1363
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D llmg_0498 ogt; 6-O-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E llmg_0244 ung; Ung protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E llmg_1717 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E llmg_1501 nth; putative endonuclease III (DNA repair) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D llmg_1444 mutX; ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D llmg_2510 mutT; putative mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D llmg_2114 ps428; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D llmg_0191 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D llmg_0816 ps325; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D llmg_0498 ogt; 6-O-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D llmg_0499 adaA; methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C BER (base exicision repair)
D DNA glycosylases
E llmg_0244 ung; Ung protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E llmg_1717 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E llmg_0373 fpg; Fpg protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E llmg_1501 nth; putative endonuclease III (DNA repair) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E llmg_1765 exoA; 3'-exo-deoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E llmg_0606 recJ; single strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E llmg_0444 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E llmg_2425 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E llmg_2008 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E llmg_0534 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E llmg_1718 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
E llmg_1445 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E llmg_2425 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E llmg_0444 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F llmg_1982 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F llmg_1981 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F llmg_2354 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F llmg_0608 rpoE; DNA-directed RNA polymerase delta chain K03048 rpoE; DNA-directed RNA polymerase subunit delta
F llmg_2154 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F llmg_0013 mfd; Transcription-repair coupling factor (TRCF) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E llmg_2491 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
E llmg_0778 mutS; DNA mismatch repair protein mutS K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E llmg_2489 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E llmg_1692 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E llmg_1691 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E llmg_0483 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E llmg_2409 polC; DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E llmg_0002 dnaN; beta subunit of DNA polymerase III K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E llmg_0768 holA; putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E llmg_0416 holB; DNA polymerase III K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E llmg_1537 dnaQ; DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E llmg_2478 dnaX; DNA polymerase III subunits gamma / tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E llmg_0444 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E llmg_1445 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E llmg_2126 ps416; Single-strand binding protein ssB K03111 ssb; single-strand DNA-binding protein
E llmg_2474 ssbB; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E llmg_0409 ssbA; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E llmg_1922 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E llmg_0374 recA; recombination protein A K03553 recA; recombination protein RecA
E llmg_2488 ruvA; holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E llmg_2487 ruvB; holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E llmg_2153 priA; Primosomal protein N' (Replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E llmg_1133 sbcC; nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
E llmg_1132 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E llmg_0374 recA; recombination protein A K03553 recA; recombination protein RecA
E llmg_2343 radA; putative ATP-dependent protease K04485 radA; DNA repair protein RadA/Sms
E llmg_2229 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
E llmg_2523 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E llmg_0606 recJ; single strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E llmg_0067 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
E llmg_0359 recR; Recombination protein recR K06187 recR; recombination protein RecR
E llmg_1685 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
E llmg_0512 recU; putative recombination protein U K03700 recU; recombination protein U
E llmg_2488 ruvA; holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E llmg_2487 ruvB; holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E llmg_0004 rexA; ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E llmg_0003 rexB; ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E llmg_1133 sbcC; nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
E llmg_1132 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F llmg_1451 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F llmg_1631 gyrB; topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F llmg_1374 ltrE; LtrE protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F llmg_1272 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F llmg_0496 hllA; HU-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F llmg_1661 hslB; HU-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F llmg_0606 recJ; single strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F llmg_0067 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
F llmg_0359 recR; Recombination protein recR K06187 recR; recombination protein RecR
F llmg_0444 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F llmg_1992 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F llmg_2008 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F llmg_0534 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D llmg_2305 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D llmg_0374 recA; recombination protein A K03553 recA; recombination protein RecA
D llmg_1685 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
D llmg_2126 ps416; Single-strand binding protein ssB K03111 ssb; single-strand DNA-binding protein
D llmg_2474 ssbB; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D llmg_0409 ssbA; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D llmg_2466 recX; Regulatory protein recX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D llmg_2021 dinG; Probable ATP-dependent helicase dinG homolog K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D llmg_1444 mutX; ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D llmg_2510 mutT; putative mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D llmg_2114 ps428; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D llmg_0191 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D llmg_0816 ps325; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D llmg_1543 nrdE; ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D llmg_1544 nrdF; ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D llmg_1825 conserved hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024