+E Transcription factors KO
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Transcription Factors - Listeria monocytogenes CLIP 80459 (serotype 4b)
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D Lm4b_00679 Putative type II DNA modification enzyme (methyltransferase) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D Lm4b_00082 Putative Ada protein (O6-methylguanine-DNA methyltransferase) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Lm4b_02270 Putative methylphosphotriester-DNA alkyltransferase and transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D Lm4b_01749 gltC; HTH-type transcriptional regulator gltC K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D Lm4b_00515 Putative transcriptional regulator (LysR family) K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D Lm4b_02316 Putative LysR family transcription regulator K21960 ytlI; LysR family transcriptional regulator, regulator of the ytmI operon
C DeoR family
D Lm4b_02301 Putative regulatory protein DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D Lm4b_00400 Putative transcription repressor of myo-inositol catabolism operon IolR K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D Lm4b_02129 Putative transcriptional regulator (DeoR family) K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D Lm4b_01881 unnamed protein product; Conserved hypothetical protein; Similar to conserved hypothetical proteins K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D Lm4b_01050 Putative transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Lm4b_00040 Putative transcriptional regulator (LacI family) K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Lm4b_01610 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Lm4b_00874 Putative transcription regulator lacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Lm4b_01741 Putative transcription regulator (LacI family) K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Lm4b_02006 Putative transcription regulator (LacI family) K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D Lm4b_01263 Putative transcription regulator GntR family K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D Lm4b_00922 Putative transcription regulator (GntR family) K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D Lm4b_00601 Putative transcription regulator GntR family K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D Lm4b_00390 Putative transcription regulator (GntR family) K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D Lm4b_00978 Putative transcription regulator (GntR family) K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D Lm4b_02169 Putative transcription regulator GntR family K03710 K03710; GntR family transcriptional regulator
D Lm4b_02268 Putative transcriptional regulator (GntR family) K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
D Lm4b_01981 Putative transcription regulator (TetR family) K09017 rutR; TetR/AcrR family transcriptional regulator
C Lrp/AsnC family
C LuxR family
C MarR family
D Lm4b_01009 Putative regulatory proteins (MarR family) K18909 mepR; MarR family transcriptional regulator, repressor for mepA
D Lm4b_02227 Putative transcription regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Lm4b_01230 Putative transcriptional regulator (MarR family). K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D Lm4b_01307 glnR; Putative glutamine synthetase repressor K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D Lm4b_02560 Putative transcription regulator (MerR family) K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D Lm4b_02702 Putative transcription regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
C Fur family
D Lm4b_01975 fur; Putative transcriptional regulator (Fur family) K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Lm4b_01455 zurR; transcriptional regulator ZurR (ferric uptake regulation) K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D Lm4b_01697 Putative transcription regulator (Fur family) K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
D Lm4b_00197 prfA; listeriolysin positive regulatory protein K21560 prfA; CRP/FNR family transcriptional regulator, listeriolysin regulatory protein
D Lm4b_00769 Putative transcription regulator Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D Lm4b_01525 Hypothetical protein of unknown function K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D Lm4b_02462 Putative transcription regulator ArsR family K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
C PadR family
D Lm4b_01417 Hypothetical protein of unknown function K26741 ladR; PadR family transcriptional regulator, multidrug transcriptional repressor LadR
D Lm4b_00747 Hypothetical protein of unknown function K10947 K10947; PadR family transcriptional regulator
D Lm4b_00625 unnamed protein product; Conserved hypothetical protein K10947 K10947; PadR family transcriptional regulator
C Other families
D Lm4b_01894 Putative transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D Lm4b_01921 birA; Putative transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Lm4b_00189 Putative PurR, transcription repressor of purine operon of B. subtilis K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D Lm4b_02093 Putative a putative DNA binding protein K01926 rex; redox-sensing transcriptional repressor
D Lm4b_01290 codY; GTP-sensing transcriptional pleiotropic repressor codY K03706 codY; transcriptional pleiotropic repressor
D Lm4b_00760 Putative transcription regulator K07726 K07726; putative transcriptional regulator
D Lm4b_01420 Hypothetical protein of unknown function K07727 K07727; putative transcriptional regulator
D Lm4b_00439 Putative transcription regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D Lm4b_00905 Putative YdcD protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D Lm4b_02404 Putative transcription antiterminator K03488 licT; beta-glucoside operon transcriptional antiterminator
D Lm4b_02748 Putative transcription antiterminator K03488 licT; beta-glucoside operon transcriptional antiterminator
D Lm4b_02618 Putative transcriptional antiterminator K03483 mtlR; mannitol operon transcriptional activator
D Lm4b_00325 Putative transcriptional antiterminator (BglG family) K03491 licR; probable licABCH operon transcriptional regulator
D Lm4b_00938 Putative transcription antiterminator BglG family K03491 licR; probable licABCH operon transcriptional regulator
D Lm4b_02325 Putative transcription antiterminator BglG family K03491 licR; probable licABCH operon transcriptional regulator
D Lm4b_02760 Putative licABCH operon regulator K03491 licR; probable licABCH operon transcriptional regulator
C Others
D Lm4b_01870 unnamed protein product; Similar to conserved hypothetical proteins; Conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Lm4b_01624 Hypothetical protein of unknown function K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Lm4b_00169 Putative transcription regulatory protein AbrB K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D Lm4b_02763 parB; Partition protein ParB homolg K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Lm4b_02767 Putative DNA-binding protein Spo0J-like K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Lm4b_01414 Putative anti-terminator regulatory protein GlpP K02443 glpP; glycerol uptake operon antiterminator
D Lm4b_01376 Putative arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D Lm4b_01485 hrcA; transcription repressor of class I heat-shock gene HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Lm4b_00334 Putative thiamin biosynthesis protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D Lm4b_00249 Putative transcription repressor of class III stress genes (CtsR) K03708 ctsR; transcriptional regulator of stress and heat shock response
D Lm4b_02454 Putative PspC domain-containing protein K03973 pspC; phage shock protein C
D Lm4b_02429 Putative transcriptional regulator CggR K05311 cggR; central glycolytic genes regulator
D Lm4b_02008 Putative transcription repressor of dra/nupC/pdp operon DeoR K05346 deoR; deoxyribonucleoside regulator
D Lm4b_01856 pyrR; Putative pyrimidine operon regulatory protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Lm4b_01573 Hypothetical protein of unknown function K07738 nrdR; transcriptional repressor NrdR
D Lm4b_02297 comK; competence transcription factor K02250 comK; competence protein ComK
D Lm4b_02063 Hypothetical protein of unknown function K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0