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Transfer RNA Biogenesis - Listeria monocytogenes CLIP 80459 (serotype 4b)
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D Lm4b_01989 Hypothetical protein of unknown function K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D Lm4b_01922 cca; Putative tRNA CCA-adding enzyme K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D Lm4b_00273 Hypothetical protein of unknown function K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D Lm4b_01327 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Lm4b_02031 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Lm4b_01673 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Lm4b_00174 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Lm4b_02529 argS; arginyl tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Lm4b_00226 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Lm4b_01529 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D Lm4b_01514 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Lm4b_01913 ansB; Putative asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Lm4b_01570 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Lm4b_02721 serS; seryl-trna synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Lm4b_00259 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Lm4b_01563 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Lm4b_01530 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Lm4b_01226 pheS; phenylalany-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Lm4b_01227 pheT; phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Lm4b_01609 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Lm4b_02225 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D Lm4b_01532 Hypothetical protein of unknown function K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D Lm4b_02243 Putative histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D Lm4b_01626 Hypothetical protein of unknown function K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D Lm4b_02565 truA; Putative pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Lm4b_01336 truB; Putative tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D Lm4b_01604 Putative iron-sulfur cofactor synthesis protein nifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Lm4b_01523 Putative iron-sulfur cofactor synthesis protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Lm4b_02034 Putative NifS-like protein required for NAD biosynthesis K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D Lm4b_02510 Putative yeast translation initiation protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Lm4b_01303 miaA; Putative tRNA isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Lm4b_02784 Putative GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Lm4b_02783 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D Lm4b_02827 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D Lm4b_01989 Hypothetical protein of unknown function K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D Lm4b_01243 Putative ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
C CCA adding factors
D Lm4b_01922 cca; Putative tRNA CCA-adding enzyme K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
D Lm4b_00273 Hypothetical protein of unknown function K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D Lm4b_01673 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Lm4b_01327 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D Lm4b_01609 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Lm4b_02225 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Lm4b_01570 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Lm4b_02031 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Lm4b_00226 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Lm4b_01514 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Lm4b_01563 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Lm4b_00174 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Lm4b_02721 serS; seryl-trna synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Lm4b_01529 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Lm4b_01469 glyQ; Putative glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Lm4b_01468 glyS; Putative glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Lm4b_00259 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Lm4b_02529 argS; arginyl tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Lm4b_01226 pheS; phenylalany-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Lm4b_01227 pheT; phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Lm4b_01530 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Lm4b_01913 ansB; Putative asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Lm4b_00257 gltX; Putative glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
C Trans-editing factors
D Lm4b_01532 Hypothetical protein of unknown function K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Lm4b_00806 Putative transcription regulator K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D Lm4b_02693 Conserved hypothetical proteins K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D Lm4b_00225 unnamed protein product; Conserved hypothetical protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
C Methyltransferases
D Lm4b_01286 gid; Putative glucose inhibited division protein A K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D Lm4b_01626 Hypothetical protein of unknown function K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Lm4b_01808 trmD; Putative tRNA (guanine-N1) methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Lm4b_02784 Putative GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Lm4b_01463 unnamed protein product; Conserved hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D Lm4b_00955 Putative CspR protein, rRNA methylase homolog K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Lm4b_01223 Putative rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D Lm4b_02565 truA; Putative pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Lm4b_01336 truB; Putative tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D Lm4b_01522 Putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Lm4b_01604 Putative iron-sulfur cofactor synthesis protein nifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Lm4b_01523 Putative iron-sulfur cofactor synthesis protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Lm4b_02034 Putative NifS-like protein required for NAD biosynthesis K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Other tRNA modification factors
D Lm4b_02783 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Lm4b_01303 miaA; Putative tRNA isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Lm4b_01541 Putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Lm4b_00954 Putative YhbA protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Lm4b_01540 Putative tRNA-guanine transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D Lm4b_01603 Putative thiamin biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Lm4b_00217 Hypothetical protein of unknown function K15780 tilS-hprT; bifunctional protein TilS/HprT [EC:6.3.4.19 2.4.2.8]
D Lm4b_02098 Putative glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Lm4b_02510 Putative yeast translation initiation protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Lm4b_02096 Putative glycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Lm4b_02099 Hypothetical protein of unknown function K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Lm4b_02070 Hypothetical protein of unknown function K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
B tRNA degradation factors
C Lm4b_02418 Putative exoribonuclease RNase-R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C Lm4b_01339 pnpA; polynucleotide phosphorylase (PNPase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024