+F Repair protein KO #

  DNA Repair and Recombination Proteins - Legionella waltersii

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SAMEA4504053_2772 phrB; deoxyribodipyrimidine photolyase phrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SAMEA4504053_0593 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SAMEA4504053_1194 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SAMEA4504053_1229 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SAMEA4504053_3410 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SAMEA4504053_1698 mutT_1; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAMEA4504053_0946 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SAMEA4504053_2347 ada; transcription regulator protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D SAMEA4504053_2772 phrB; deoxyribodipyrimidine photolyase phrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D SAMEA4504053_2746 Deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E SAMEA4504053_0593 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SAMEA4504053_1194 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SAMEA4504053_1229 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SAMEA4504053_1720 tag; 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SAMEA4504053_0879 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SAMEA4504053_3410 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SAMEA4504053_0983 exoA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SAMEA4504053_0984 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E SAMEA4504053_1889 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SAMEA4504053_2213 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SAMEA4504053_0128 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SAMEA4504053_0703 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SAMEA4504053_3143 uvrC; excinuclease ABC subunit K03703 uvrC; excinuclease ABC subunit C E SAMEA4504053_2041 uvrD; DNA dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAMEA4504053_0128 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SAMEA4504053_2213 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SAMEA4504053_0642 rpoB; RNA polymerase B-subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SAMEA4504053_0643 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SAMEA4504053_0673 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SAMEA4504053_2254 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SAMEA4504053_2218 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SAMEA4504053_1994 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E SAMEA4504053_3197 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E SAMEA4504053_1715 mutH; DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E SAMEA4504053_1155 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SAMEA4504053_2566 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SAMEA4504053_2209 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SAMEA4504053_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SAMEA4504053_3129 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E SAMEA4504053_1523 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SAMEA4504053_1573 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SAMEA4504053_1556 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SAMEA4504053_3257 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SAMEA4504053_2213 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SAMEA4504053_2041 uvrD; DNA dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAMEA4504053_0305 ssb_1; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SAMEA4504053_0372 ssb_2; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SAMEA4504053_0675 ssb_3; single strand binding protein K03111 ssb; single-strand DNA-binding protein E SAMEA4504053_2176 ssb_4; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SAMEA4504053_0989 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SAMEA4504053_1988 recA; recombination protein RecA K03553 recA; recombination protein RecA E SAMEA4504053_1482 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SAMEA4504053_1803 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SAMEA4504053_1481 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SAMEA4504053_3394 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E SAMEA4504053_1988 recA; recombination protein RecA K03553 recA; recombination protein RecA E SAMEA4504053_2563 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E SAMEA4504053_0003 recF; RecF recombinational DNA repair ATPase K03629 recF; DNA replication and repair protein RecF E SAMEA4504053_2281 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SAMEA4504053_2977 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SAMEA4504053_1889 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SAMEA4504053_2227 recO; DNA repair protein RecO (recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) E SAMEA4504053_3259 recR; recombinational DNA repair protein RecR K06187 recR; recombination protein RecR E SAMEA4504053_3348 recN; DNA repair ATPase K03631 recN; DNA repair protein RecN (Recombination protein N) E SAMEA4504053_1410 rdgC; exonuclease involved in removal of stalled replication fork K03554 rdgC; recombination associated protein RdgC E SAMEA4504053_1482 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SAMEA4504053_1803 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SAMEA4504053_1481 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E SAMEA4504053_1899 putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SAMEA4504053_1590 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SAMEA4504053_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SAMEA4504053_3086 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SAMEA4504053_2057 hupB; HupB DNA binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SAMEA4504053_1889 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SAMEA4504053_2227 recO; DNA repair protein RecO (recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) F SAMEA4504053_3259 recR; recombinational DNA repair protein RecR K06187 recR; recombination protein RecR F SAMEA4504053_2213 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F SAMEA4504053_0871 fis_1; global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F SAMEA4504053_1543 fis_2; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F SAMEA4504053_1927 fis_3; Fis transcriptional activator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F SAMEA4504053_3215 ihfA; integration host factor (IHF) alpha subunit K04764 ihfA; integration host factor subunit alpha F SAMEA4504053_3468 ihfB; integration host factor beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F SAMEA4504053_1195 recQ; Superfamily II DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SAMEA4504053_0703 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SAMEA4504053_1643 umuC; SOS mutagenesis and repair UmuC protein K03502 umuC; DNA polymerase V D SAMEA4504053_1642 umuD; SOS (error prone) mutagenesis protein UmuD (RumA) K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D SAMEA4504053_1988 recA; recombination protein RecA K03553 recA; recombination protein RecA D SAMEA4504053_3348 recN; DNA repair ATPase K03631 recN; DNA repair protein RecN (Recombination protein N) D SAMEA4504053_0305 ssb_1; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SAMEA4504053_0372 ssb_2; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SAMEA4504053_0675 ssb_3; single strand binding protein K03111 ssb; single-strand DNA-binding protein D SAMEA4504053_2176 ssb_4; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SAMEA4504053_1987 recX; regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SAMEA4504053_3340 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D SAMEA4504053_1342 dinG; ATP dependent DNA helicase (DEAD box family) Rad3 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D SAMEA4504053_1698 mutT_1; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAMEA4504053_0946 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SAMEA4504053_1958 nrdA; ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SAMEA4504053_1959 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024