+F Repair protein KO #

  DNA Repair and Recombination Proteins - Methanobrevibacter sp. AbM4

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Abm4_0828 ogt; 6-O-methylguanine DNA methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Abm4_1673 ogg; 8-oxoguanine DNA glycosylase Ogg K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E Abm4_1194 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E Abm4_1647 pcn; DNA polymerase sliding clamp subunit PCNA family Pcn K04802 PCNA; proliferating cell nuclear antigen E Abm4_0178 fen; flap endonuclease Fen K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E Abm4_0234 dnlI; ATP-dependent DNA ligase DnlI K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) E Abm4_1694 rpaI; replication factor A RpaI K07466 RFA1; replication factor A1 D Other NER factors E Abm4_0234 dnlI; ATP-dependent DNA ligase DnlI K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E Abm4_1694 rpaI; replication factor A RpaI K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E Abm4_1647 pcn; DNA polymerase sliding clamp subunit PCNA family Pcn K04802 PCNA; proliferating cell nuclear antigen E Abm4_0234 dnlI; ATP-dependent DNA ligase DnlI K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E Abm4_1694 rpaI; replication factor A RpaI K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D Abm4_1647 pcn; DNA polymerase sliding clamp subunit PCNA family Pcn K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Abm4_1650 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Abm4_1668 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Abm4_1032 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Abm4_0206 dut; dUTP diphosphatase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Abm4_0828 ogt; 6-O-methylguanine DNA methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Abm4_1167 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Abm4_1194 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Abm4_1150 xth; exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E Abm4_1479 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E Abm4_0083 recJ1; ssDNA exonuclease RecJ1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Abm4_1137 recJ2; ssDNA exonuclease RecJ2 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E Abm4_0861 uvrA; excinuclease ABC A subunit UvrA K03701 uvrA; excinuclease ABC subunit A E Abm4_0862 uvrB; excinuclease ABC B subunit UvrB K03702 uvrB; excinuclease ABC subunit B E Abm4_0814 uvrC; excinuclease ABC C subunit UvrC K03703 uvrC; excinuclease ABC subunit C E Abm4_0863 ATP-dependent DNA helicase UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Abm4_1402 DNA mismatch repair ATPase MutS family K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E Abm4_1395 xseA; exodeoxyribonuclease VII large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Abm4_1396 xseB; exodeoxyribonuclease VII small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors E Abm4_0863 ATP-dependent DNA helicase UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Abm4_1018 type II DNA modification methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Abm4_0879 rad50; DNA double-strand break repair protein Rad50 K03546 sbcC; DNA repair protein SbcC/Rad50 E Abm4_0880 mre11; DNA double-strand break repair protein Mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Abm4_0083 recJ1; ssDNA exonuclease RecJ1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Abm4_1137 recJ2; ssDNA exonuclease RecJ2 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor E Abm4_0106 CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E Abm4_1082 CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E Abm4_1693 radA; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E Abm4_0279 radB; DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB E Abm4_1602 hjc; archaeal Holliday junction resolvase Hjc K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E Abm4_0879 rad50; DNA double-strand break repair protein Rad50 K03546 sbcC; DNA repair protein SbcC/Rad50 E Abm4_0880 mre11; DNA double-strand break repair protein Mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 E Abm4_0881 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase E Abm4_0882 NurA domain-containing protein K25510 nurA; DNA double-strand break repair nuclease NurA [EC:3.1.-.-] E Abm4_0534 DEAD/DEAH box helicase domain-containing protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Abm4_0185 topA; DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Abm4_0083 recJ1; ssDNA exonuclease RecJ1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Abm4_1137 recJ2; ssDNA exonuclease RecJ2 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Facilitator E Supressor F Abm4_0861 uvrA; excinuclease ABC A subunit UvrA K03701 uvrA; excinuclease ABC subunit A F Abm4_0862 uvrB; excinuclease ABC B subunit UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D Abm4_0546 UvrD/REP family DNA helicase K03658 helD; DNA helicase IV [EC:5.6.2.4] D Abm4_0389 DEAD/DEAH box helicase domain-containing protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Abm4_1378 DEAD/DEAH box helicase domain-containing protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D Abm4_1650 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Abm4_1668 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Abm4_1032 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Abm4_0206 dut; dUTP diphosphatase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D Abm4_0966 hypothetical protein K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024