+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Meriones unguiculatus (Mongolian gerbil)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 110562159 Rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 110547371 Rngtt; mRNA-capping enzyme isoform X1 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 110566173 Cdk7; cyclin-dependent kinase 7 isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 110546567 Cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 110542580 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2-like K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 110546039 Cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 110546324 Ramac; RNA guanine-N7 methyltransferase activating subunit K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 110555007 Ncbp1; nuclear cap-binding protein subunit 1 isoform X1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 110553297 Ncbp2; nuclear cap-binding protein subunit 2 isoform X1 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 110561154 Nudt21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 110552387 Cpsf6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 110548096 Cpsf7; cleavage and polyadenylation specificity factor subunit 7 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 110551958 Clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 110554222 Pcf11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 110562273 Cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 110556443 Cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 110564169 Cpsf3; cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 132650516 Cpsf4; LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 110566845 Fip1l1; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 110552229 Wdr33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 110550180 Wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 110545313 Ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 110554524 Ppp1cb; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 110560352 Ppp1ca; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 110560042 Ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 110556349 Cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 110542239 Cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 110557524 Cstf2t; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 110554031 Cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 110551497 Sympk; symplekin isoform X3 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 110553285 Snrpb; small nuclear ribonucleoprotein-associated proteins B and B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 110558681 Snrpd3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 110546727 Snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 110545533 LOW QUALITY PROTEIN: small nuclear ribonucleoprotein F-like K11098 SNRPF; small nuclear ribonucleoprotein F
E 110547151 Snrpg; small nuclear ribonucleoprotein G isoform X1 K11099 SNRPG; small nuclear ribonucleoprotein G
E 110555408 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 132652338 small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 110554182 Lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 110557205 Lsm11; U7 snRNA-associated Sm-like protein LSm11 isoform X1 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 110556443 Cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 110564169 Cpsf3; cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 110542239 Cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 110557524 Cstf2t; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 110551497 Sympk; symplekin isoform X3 K06100 SYMPK; symplekin
E 110557342 Slbp; histone RNA hairpin-binding protein isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 110556858 Casp8ap2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 110566145 Supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 110564719 Supt5h; transcription elongation factor SPT5 isoform X2 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 110557725 Mettl3; N6-adenosine-methyltransferase catalytic subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 110561950 Mettl14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 110558712 Mettl4; N(6)-adenine-specific methyltransferase METTL4 isoform X1 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 110551483 Mettl16; RNA N6-adenosine-methyltransferase METTL16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 110558711 RNA N6-adenosine-methyltransferase METTL16-like K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 110547882 Wtap; pre-mRNA-splicing regulator WTAP isoform X1 K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 110564132 Virma; protein virilizer homolog isoform X1 K22910 VIRMA; protein virilizer
E 110545500 Rbm15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 110540234 Rbm15b; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 110547483 Zc3h13; zinc finger CCCH domain-containing protein 13 isoform X3 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 110558986 Cbll1; E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 110539741 Papolg; poly(A) polymerase gamma K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 110539803 Papolb; poly(A) polymerase beta K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 110555929 Papola; poly(A) polymerase alpha isoform X5 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 110565036 Tent2; poly(A) RNA polymerase GLD2 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 110557472 Tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 110560534 Bard1; BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 110541024 Rbm26; RNA-binding protein 26 isoform X1 K13192 RBM26; RNA-binding protein 26
E 110545187 Fto; alpha-ketoglutarate-dependent dioxygenase FTO isoform X1 K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 110549981 Alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 110548149 Tardbp; TAR DNA-binding protein 43 isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
E 110543581 LOW QUALITY PROTEIN: TAR DNA-binding protein 43-like K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 110539812 Dhx40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 110545612 Kin; DNA/RNA-binding protein KIN17 isoform X1 K13102 KIN; DNA/RNA-binding protein KIN17
D 110549833 Mettl8; tRNA N(3)-methylcytidine methyltransferase METTL8, mitochondrial isoform X2 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 110553200 Mettl22; methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 110552619 Tent5b; terminal nucleotidyltransferase 5B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 110562451 Tent5a; terminal nucleotidyltransferase 5A isoform X1 K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 110566153 Tent5c; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 110543612 Tent5d; terminal nucleotidyltransferase 5D K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 110566155 Zc3h14; zinc finger CCCH domain-containing protein 14 isoform X1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 110540907 Srrt; serrate RNA effector molecule homolog isoform X2 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 110541405 Rbm8a; RNA-binding protein 8A isoform X1 K12876 RBM8A; RNA-binding protein 8A
E 110563506 Magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 110560946 protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 110548822 Alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 110560125 Ddx39b; spliceosome RNA helicase DDX39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 110550104 Eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 110549246 Ccdc174; coiled-coil domain-containing protein 174 isoform X1 K25178 CCDC174; coiled-coil domain-containing protein 174
E 110558491 Casc3; protein CASC3 K14323 CASC3; protein CASC3
E 110549736 Sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 110553693 Pnn; pinin K13114 PNN; pinin
E 110550035 Acin1; apoptotic chromatin condensation inducer in the nucleus isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 110553031 Rnps1; RNA-binding protein with serine-rich domain 1 isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 110545416 Srrm1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 110564214 Thoc1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 110562826 THO complex subunit 2-like K12879 THOC2; THO complex subunit 2
E 110566677 Thoc2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 110554056 Thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 110548822 Alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 110546114 Thoc5; THO complex subunit 5 homolog isoform X1 K13174 THOC5; THO complex subunit 5
E 110545983 Thoc6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 110557704 Thoc7; THO complex subunit 7 homolog isoform X3 K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 110559735 Pcid2; PCI domain-containing protein 2 isoform X1 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 110549271 Sem1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 110542262 Eny2; transcription and mRNA export factor ENY2 isoform X1 K11368 ENY2; enhancer of yellow 2 transcription factor
E 110542600 transcription and mRNA export factor ENY2-like K11368 ENY2; enhancer of yellow 2 transcription factor
E 110548835 centrin-2 K10840 CETN2; centrin-2
E 110540272 centrin-2-like K10840 CETN2; centrin-2
E 132651473 centrin-2-like K10840 CETN2; centrin-2
E 110540881 Cetn3; centrin-3 K16466 CETN3; centrin-3
E 110546364 Mcm3ap; germinal-center associated nuclear protein isoform X1 K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 110562638 Tpr; nucleoprotein TPR K09291 TPR; nucleoprotein TPR
E 110560873 Rae1; mRNA export factor RAE1 K14298 RAE1; mRNA export factor
E 110548932 Sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 110550282 Nup37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 110547775 Nup85; nuclear pore complex protein Nup85 isoform X1 K14304 NUP85; nuclear pore complex protein Nup85
E 110565906 Nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 110545035 Nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 110561624 nuclear pore complex protein Nup50-like K14295 NUP50; nuclear pore complex protein Nup50
E 110556235 Nup54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 110546829 Nup62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 110565516 Nup62cl; nucleoporin-62 C-terminal-like protein isoform X2 K14306 NUP62; nuclear pore complex protein Nup62
E 110564058 Nup88; nuclear pore complex protein Nup88 isoform X2 K14318 NUP88; nuclear pore complex protein Nup88
E 110560954 Nup93; nuclear pore complex protein Nup93 isoform X3 K14309 NUP93; nuclear pore complex protein Nup93
E 110557552 Nup98; nuclear pore complex protein Nup98-Nup96 isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 110562246 Nup107; nuclear pore complex protein Nup107 isoform X1 K14301 NUP107; nuclear pore complex protein Nup107
E 110556377 Nup133; LOW QUALITY PROTEIN: nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 110555856 Nup188; nucleoporin NUP188 isoform X4 K14311 NUP188; nuclear pore complex protein Nup188
E 110551935 Nup153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 110559979 Nup155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 110550746 Nup160; nuclear pore complex protein Nup160 isoform X1 K14303 NUP160; nuclear pore complex protein Nup160
E 110540521 Nup35; nucleoporin NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 110558569 Nup205; nuclear pore complex protein Nup205 isoform X5 K14310 NUP205; nuclear pore complex protein Nup205
E 110549854 Nup210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 110554229 Nup210l; nuclear pore membrane glycoprotein 210-like K14314 NUP210; nuclear pore complex protein Nup210
E 110559464 Nup214; nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 110560229 Pom121l2; POM121-like protein 2 K14316 POM121; nuclear pore complex protein Nup121
E 110555859 nuclear envelope pore membrane protein POM 121 isoform X1 K14316 POM121; nuclear pore complex protein Nup121
E 110555691 Nup58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 110539328 Nup42; nucleoporin NUP42 isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 110563992 Ndc1; nucleoporin NDC1 K14315 NDC1; nucleoporin NDC1
E 110562688 Seh1l; nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 110560706 E3 SUMO-protein ligase RanBP2 isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 110561592 Senp2; sentrin-specific protease 2 isoform X1 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 132657106 sentrin-specific protease 2-like K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 110552318 Aaas; aladin isoform X1 K14320 AAAS; aladin
E 110540881 Cetn3; centrin-3 K16466 CETN3; centrin-3
E 110553362 Gle1; mRNA export factor GLE1 isoform X1 K18723 GLE1; nucleoporin GLE1
E 110557457 Nxf1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 132649879 nuclear RNA export factor 2-like K14284 NXF; nuclear RNA export factor
E 110541827 Nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
E 110560599 Nxt1; NTF2-related export protein 1 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 110540131 GTP-binding nuclear protein Ran-like K07936 RAN; GTP-binding nuclear protein Ran
E 110550165 Ran; GTP-binding nuclear protein Ran isoform X2 K07936 RAN; GTP-binding nuclear protein Ran
E 110560526 GTP-binding nuclear protein Ran-like K07936 RAN; GTP-binding nuclear protein Ran
E 110550535 Anp32a; acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X3 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 110551133 Anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 110555132 Tnfsf13; tumor necrosis factor ligand superfamily member 13 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 132650545 Elavl1; LOW QUALITY PROTEIN: ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 110559029 Elavl4; ELAV-like protein 4 isoform X2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 110564215 Elavl2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 110552469 Elavl3; ELAV-like protein 3 isoform X3 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 110554060 Faf2; FAS-associated factor 2 isoform X1 K18726 FAF2; FAS-associated factor 2
E 110547107 Vcp; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 110556923 Vcpkmt; protein N-lysine methyltransferase METTL21D isoform X1 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 110545822 Tnpo2; transportin-2 isoform X1 K18727 TNPO2; transportin-2
E 110539822 Xpo1; exportin-1 isoform X1 K14290 XPO1; exportin-1
E 110551665 Xpo7; exportin-7 isoform X1 K18460 XPO7; exportin-7
E 110549549 Ranbp17; ran-binding protein 17 isoform X1 K24115 RANBP17; Ran-binding protein 17
E 110554116 Rangap1; ran GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 110555676 Taf15; TATA-binding protein-associated factor 2N K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E 110552948 Eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 110549781 Eif4e1b; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 110555572 Eif4e; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 110548114 Eif4a2; eukaryotic initiation factor 4A-II isoform X1 K03257 EIF4A; translation initiation factor 4A
E 110555150 Eif4a1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 110540983 Eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 110549390 Eif4g1; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 110545001 Eif4g3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 110552302 Eif4b; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 110554202 Eif4h; eukaryotic translation initiation factor 4H K24086 EIF4H; translation initiation factor 4H
E 110550200 Eif4ebp1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 110555909 Eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 110557577 Eif4enif1; eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 110556972 Angel2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 110558261 Angel1; protein angel homolog 1 isoform X1 K18729 ANGEL; protein angel
E 110556574 Fxr1; RNA-binding protein FXR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 110555149 Fxr2; RNA-binding protein FXR2 isoform X2 K15516 FMR; fragile X mental retardation protein
E 110543042 Fmr1; fragile X messenger ribonucleoprotein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 110557961 Cyfip1; cytoplasmic FMR1-interacting protein 1 isoform X2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 110554045 Cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 110563366 Gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 110557838 Tacc3; transforming acidic coiled-coil-containing protein 3 isoform X1 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 110545281 Cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110546309 Cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110549501 Cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110542241 Cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110549243 putative ATP-dependent RNA helicase Pl10 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 110540696 Ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 110552955 Gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 110556765 Gigyf1; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 110561221 Pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 110548236 Pabpc1l; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 110549953 Pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 110544528 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 110543015 Pabpc4l; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 110560616 polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 132649851 Pabpc1l2b; polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 110551549 polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 110566072 Paip1; polyadenylate-binding protein-interacting protein 1 isoform X1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 110554086 Paip2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 110551246 Paip2b; polyadenylate-binding protein-interacting protein 2B isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 110560126 Skic2; superkiller complex protein 2 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 110553901 Deaf1; deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 110565540 Mcts2; malignant T-cell-amplified sequence 2 K07575 MCTS; malignant T-cell-amplified sequence
E 110542263 Mcts1; malignant T-cell-amplified sequence 1 isoform X1 K07575 MCTS; malignant T-cell-amplified sequence
E 110560666 malignant T-cell-amplified sequence 1-like K07575 MCTS; malignant T-cell-amplified sequence
E 110558046 Denr; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 110556295 Apobec1; C->U-editing enzyme APOBEC-1 isoform X2 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 110556346 A1cf; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 110560823 Pym1; partner of Y14 and mago isoform X1 K14294 WIBG; partner of Y14 and mago
E 110557601 Hnrnpa1; heterogeneous nuclear ribonucleoprotein A1 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 110562028 Hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 110545566 Msi1; RNA-binding protein Musashi homolog 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 110551329 Dazap1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 110554955 Msi2; RNA-binding protein Musashi homolog 2 isoform X3 K14411 MSI; RNA-binding protein Musashi
E 110550416 Hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 110564857 Pelo; protein pelota homolog K06965 PELO; protein pelota
E 110550029 polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 110545201 Pabpn1l; LOW QUALITY PROTEIN: embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 110546021 ATP-dependent RNA helicase DDX19A isoform X1 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 132656810 ATP-dependent RNA helicase DDX19B isoform X1 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 110560382 Ddx25; ATP-dependent RNA helicase DDX25 isoform X2 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7]
E 132650552 Xab2; LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 110560817 Sarnp; SAP domain-containing ribonucleoprotein isoform X2 K18732 SARNP; SAP domain-containing ribonucleoprotein
E 110557194 Rcc1; regulator of chromosome condensation isoform X1 K11493 RCC1; regulator of chromosome condensation
E 110551152 Larp6; la-related protein 6 isoform X1 K18733 LARP6; la-related protein 6
E 110555162 Purb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 110552087 Poldip3; polymerase delta-interacting protein 3 isoform X1 K22414 POLDIP3; polymerase delta-interacting protein 3
E 110546736 Zc3h11a; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 110539571 Leng8; leukocyte receptor cluster member 8 isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
E 110553263 Patl2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 110558462 Etf1; eukaryotic peptide chain release factor subunit 1 isoform X1 K03265 ETF1; peptide chain release factor subunit 1
E 110541338 eukaryotic peptide chain release factor GTP-binding subunit ERF3B K03267 ERF3; peptide chain release factor subunit 3
E 110558914 Gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 110549166 Upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 110560544 Upf2; regulator of nonsense transcripts 2 isoform X4 K14327 UPF2; regulator of nonsense transcripts 2
E 110551288 Upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 110563826 Upf3b; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 110549625 Ppp2ca; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 110548328 Ppp2cb; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 110560607 Ppp2r1b; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X1 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 110565703 Ppp2r1a; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 110549018 Ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 110544846 Ppp2r2c; protein phosphatase 2, regulatory subunit B, gamma isoform X2 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 110564033 Ppp2r2b; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 110559335 Ppp2r2a; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X2 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 110553748 Ppp2r3b; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 110559682 Ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 110565800 Ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 110556971 Ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 110550362 Ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 110549337 Ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 110553236 Ppp2r5c; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 110557573 Ppp2r5e; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 110554339 Smg1; serine/threonine-protein kinase SMG1 isoform X3 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 110548968 Smg5; nonsense-mediated mRNA decay factor SMG5 isoform X2 K11125 SMG5; protein SMG5
E 110566038 nonsense-mediated mRNA decay factor SMG5-like K11125 SMG5; protein SMG5
E 110551464 Smg6; telomerase-binding protein EST1A isoform X2 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 110546190 Smg7; nonsense-mediated mRNA decay factor SMG7 isoform X1 K14409 SMG7; protein SMG7
E 132649899 LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG7-like K14409 SMG7; protein SMG7
E 110541300 LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG7-like K14409 SMG7; protein SMG7
E 110564081 Smg8; nonsense-mediated mRNA decay factor SMG8 K18734 SMG8; protein SMG8
E 110540021 Smg9; nonsense-mediated mRNA decay factor SMG9 isoform X1 K18735 SMG9; protein SMG9
E 110552955 Gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 110556765 Gigyf1; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 110559071 Secisbp2; selenocysteine insertion sequence-binding protein 2 isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 110560156 Secisbp2l; selenocysteine insertion sequence-binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 110555214 Dhx34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 110557815 Gtpbp1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 110559413 Pum3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 110545475 Myo5a; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 110545476 Myo5c; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 110550726 Myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 110561703 Bicd2; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 110561229 Bicd1; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 110550611 Exd1; piRNA biogenesis protein EXD1 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 110548804 Actg1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 110558188 Actb; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 110562062 Mbp; myelin basic protein isoform X1 K17269 MBP; myelin basic protein
E 110540832 Vim; vimentin K07606 VIM; vimentin
E 110561155 metallothionein-2-like K14739 MT1_2; metallothionein 1/2
E 110561159 metallothionein-2 isoform X1 K14739 MT1_2; metallothionein 1/2
E 110561160 metallothionein-1 K14739 MT1_2; metallothionein 1/2
E 110561161 metallothionein-2-like K14739 MT1_2; metallothionein 1/2
E 110546206 metallothionein-1-like K14739 MT1_2; metallothionein 1/2
E 132656833 metallothionein-1-like K14739 MT1_2; metallothionein 1/2
E 132656834 metallothionein-1 K14739 MT1_2; metallothionein 1/2
E 132656835 metallothionein-1-like K14739 MT1_2; metallothionein 1/2
E 110551617 metallothionein-1-like K14739 MT1_2; metallothionein 1/2
E 110564653 metallothionein-1-like K14739 MT1_2; metallothionein 1/2
E 110560064 Myc; myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein
E 110549167 Gdf1; embryonic growth/differentiation factor 1 K05495 GDF1; growth differentiation factor 1
E 110548012 Tbx6; T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 110566861 Nanos1; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 110552829 Zbp1; Z-DNA-binding protein 1 isoform X2 K12965 ZBP1; Z-DNA binding protein 1
E 110556055 Fubp1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 110546269 Khsrp; far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein
E 110558566 Fubp3; far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein
E 110560520 Eef1a1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 110553758 Eef1a2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 110557464 Eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 110546150 Hnrnpa2b1; heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 110554254 Hax1; HCLS1-associated protein X-1 isoform X1 K16220 HAX1; HCLS1-associated protein X-1
E 110563246 Agfg1; arf-GAP domain and FG repeat-containing protein 1 isoform X7 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 110549065 Stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 110557615 Stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 110551301 Igf2bp3; insulin-like growth factor 2 mRNA-binding protein 3 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 110551367 Ptbp1; polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 110545281 Cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110546309 Cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110549501 Cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110542241 Cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 110556574 Fxr1; RNA-binding protein FXR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 110555149 Fxr2; RNA-binding protein FXR2 isoform X2 K15516 FMR; fragile X mental retardation protein
E 110543042 Fmr1; fragile X messenger ribonucleoprotein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 110557961 Cyfip1; cytoplasmic FMR1-interacting protein 1 isoform X2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 110554045 Cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 110552315 Pcbp2; poly(rC)-binding protein 2 isoform X22 K13162 PCBP2; poly(rC)-binding protein 2
E 110546357 Pcbp3; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 110550182 Pcbp4; poly(rC)-binding protein 4 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 110561724 Caprin1; caprin-1 isoform X1 K18743 CAPRIN1; caprin-1
E 110548306 Caprin2; caprin-2 isoform X2 K18744 CAPRIN2; caprin-2
E 110547467 Ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 110543919 Y-box-binding protein 1-like isoform X1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 110539932 Xrn1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 110562993 Ago1; protein argonaute-1 isoform X2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 110562996 protein argonaute-4 isoform X2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 110542474 Ago2; protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 110554174 Ago3; protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 110552948 Eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 110549781 Eif4e1b; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 110555572 Eif4e; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 110549166 Upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 110549243 putative ATP-dependent RNA helicase Pl10 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 110540696 Ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 110549091 Ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 110552827 Mex3b; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 110550724 Mex3c; RNA-binding E3 ubiquitin-protein ligase MEX3C K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 110549005 Mex3a; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 110551325 Mex3d; RNA-binding protein MEX3D K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 110562562 Fastk; fas-activated serine/threonine kinase isoform X1 K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 110554013 Lsm14b; protein LSM14 homolog B isoform X2 K18749 LSM14; protein LSM14
E 110551317 Lsm14a; protein LSM14 homolog A isoform X2 K18749 LSM14; protein LSM14
E 110547182 Pcbp1; poly(rC)-binding protein 1 K12889 PCBP1; poly(rC)-binding protein 1
E 110552315 Pcbp2; poly(rC)-binding protein 2 isoform X22 K13162 PCBP2; poly(rC)-binding protein 2
E 110547467 Ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 110543919 Y-box-binding protein 1-like isoform X1 K09276 YBX1; Y-box-binding protein 1
E 110551247 Wtip; Wilms tumor protein 1-interacting protein isoform X1 K16682 AJUBA; LIM domain-containing protein
E 110550045 Ajuba; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 110554135 Limd1; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 110556295 Apobec1; C->U-editing enzyme APOBEC-1 isoform X2 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 110557822 DNA dC->dU-editing enzyme APOBEC-3-like isoform X1 K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 110546997 Mov10; helicase MOV-10 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 110545414 Pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 110558298 Tnpo1; transportin-1 isoform X1 K18752 TNPO1; transportin-1
E 110554339 Smg1; serine/threonine-protein kinase SMG1 isoform X3 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 110548968 Smg5; nonsense-mediated mRNA decay factor SMG5 isoform X2 K11125 SMG5; protein SMG5
E 110566038 nonsense-mediated mRNA decay factor SMG5-like K11125 SMG5; protein SMG5
E 110551464 Smg6; telomerase-binding protein EST1A isoform X2 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 110546190 Smg7; nonsense-mediated mRNA decay factor SMG7 isoform X1 K14409 SMG7; protein SMG7
E 132649899 LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG7-like K14409 SMG7; protein SMG7
E 110541300 LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG7-like K14409 SMG7; protein SMG7
E 110564730 Zfp36; mRNA decay activator protein ZFP36 K15308 TTP; tristetraprolin
E 110546604 Zfp36l1; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 110558117 Zfp36l2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 110551974 Lin28a; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 110552401 Htt; huntingtin isoform X1 K04533 HD; huntingtin
E 110548294 Ipo8; importin-8 isoform X1 K18755 IPO8; importin-8
E 110556148 Bicc1; protein bicaudal C homolog 1 isoform X1 K18756 BICC1; protein bicaudal C
E 110557601 Hnrnpa1; heterogeneous nuclear ribonucleoprotein A1 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 110562028 Hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 110545842 Prkaca; cAMP-dependent protein kinase catalytic subunit alpha isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 110555016 Prkacb; cAMP-dependent protein kinase catalytic subunit beta isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 110552044 la-related protein 1B-like isoform X1 K18757 LARP1; la-related protein 1
E 110563363 Larp1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 110547954 Atxn2l; LOW QUALITY PROTEIN: ataxin-2-like protein K23625 ATXN2_2L; ataxin 2/2L
E 110546386 Atxn2; ataxin-2 isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 110562730 Dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 110547560 Dcp1a; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 110556685 Dcp1b; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 110540819 Lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 110560100 Lsm2; U6 snRNA-associated Sm-like protein LSm2 isoform X2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 110549257 Lsm3; U6 snRNA-associated Sm-like protein LSm3 isoform X1 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 110553211 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 110540412 LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 110549161 Lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 110561453 Lsm5; U6 snRNA-associated Sm-like protein LSm5 isoform X1 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 110553399 Lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 110555587 Lsm7; U6 snRNA-associated Sm-like protein LSm7 isoform X1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 110560020 Lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 110550346 Klc4; kinesin light chain 4 K10407 KLC; kinesin light chain
E 110556479 Klc2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 110551505 Klc3; kinesin light chain 3 isoform X1 K10407 KLC; kinesin light chain
E 110560172 Klc1; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 110545475 Myo5a; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 110545476 Myo5c; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 110550726 Myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 110547396 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 110547423 tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 110566956 tubulin alpha-4A chain isoform X1 K07374 TUBA; tubulin alpha
E 110560703 Tubal3; tubulin alpha chain-like 3 isoform X1 K07374 TUBA; tubulin alpha
E 110546048 Tuba8; tubulin alpha-8 chain K07374 TUBA; tubulin alpha
E 110548597 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 132654295 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 132655748 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 110545281 Cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110546309 Cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110549501 Cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110542241 Cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 110563366 Gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 110557838 Tacc3; transforming acidic coiled-coil-containing protein 3 isoform X1 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 110550430 Tnrc6b; trinucleotide repeat-containing gene 6B protein isoform X2 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 110550438 Tnrc6c; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 110559530 Tnrc6a; trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 110551169 Cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 110560325 Cnot2; CCR4-NOT transcription complex subunit 2 isoform X4 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 110556005 Cnot3; CCR4-NOT transcription complex subunit 3 isoform X4 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 110558571 Cnot4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 110549700 Cnot6l; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 110547366 Cnot6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 110540383 Cnot7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 110563367 Cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 110551294 Garre1; granule associated Rac and RHOG effector protein 1 isoform X1 K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 110561515 Dis3l2; DIS3-like exonuclease 2 isoform X2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 110559385 Pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 110546752 Btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 110552069 Tob1; protein Tob1 K14443 TOB; protein Tob/BTG
E 110543892 protein BTG1-like K14443 TOB; protein Tob/BTG
E 110554111 Tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 110566188 Btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 110557561 Btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 110562627 Btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 132650089 protein BTG1-like K14443 TOB; protein Tob/BTG
E 110557577 Eif4enif1; eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 110565435 Patl1; protein PAT1 homolog 1 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 110558531 Edc3; enhancer of mRNA-decapping protein 3 isoform X1 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 110545824 Edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 110551499 Nanos2; nanos homolog 2 K18760 NANOS2; protein nanos 2
E 110545803 Nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 110560544 Upf2; regulator of nonsense transcripts 2 isoform X4 K14327 UPF2; regulator of nonsense transcripts 2
E 110551288 Upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 110563826 Upf3b; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 110542163 Trim21; E3 ubiquitin-protein ligase TRIM21 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 110547921 Trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 110557465 Polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 110558812 Zar1; zygote arrest protein 1 isoform X2 K18762 ZAR1; zygote arrest protein 1
E 110541027 Ythdf3; YTH domain-containing family protein 3 isoform X3 K20102 YTHDF; YTH domain-containing family protein
E 110554626 Ythdf1; YTH domain-containing family protein 1 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 110557199 Ythdf2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 110547155 Tia1; cytotoxic granule associated RNA binding protein TIA1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 110561468 Tial1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 110561221 Pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 110548236 Pabpc1l; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 110549953 Pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 110544528 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 110543015 Pabpc4l; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 110560616 polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 132649851 Pabpc1l2b; polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 110551549 polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 110549065 Stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 110557615 Stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 110556574 Fxr1; RNA-binding protein FXR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 110555149 Fxr2; RNA-binding protein FXR2 isoform X2 K15516 FMR; fragile X mental retardation protein
E 110543042 Fmr1; fragile X messenger ribonucleoprotein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 110552829 Zbp1; Z-DNA-binding protein 1 isoform X2 K12965 ZBP1; Z-DNA binding protein 1
E 132650545 Elavl1; LOW QUALITY PROTEIN: ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 110547206 G3bp1; ras GTPase-activating protein-binding protein 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 110555425 G3bp2; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 110554786 Eif2a; eukaryotic translation initiation factor 2A isoform X1 K15026 EIF2A; translation initiation factor 2A
E 110554725 Eif3b; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 110548114 Eif4a2; eukaryotic initiation factor 4A-II isoform X1 K03257 EIF4A; translation initiation factor 4A
E 110555150 Eif4a1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 110550104 Eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 110552302 Eif4b; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 110540983 Eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 110549390 Eif4g1; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 110545001 Eif4g3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 110564837 Rps6ka2; ribosomal protein S6 kinase alpha-2 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 110552339 Rps6ka1; ribosomal protein S6 kinase alpha-1 isoform X2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 110543451 Rps6ka3; ribosomal protein S6 kinase alpha-3 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 110543863 Rps6ka6; ribosomal protein S6 kinase alpha-6 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 110551031 Rack1; small ribosomal subunit protein RACK1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 110557003 Traf2; TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 110557457 Nxf1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 132649879 nuclear RNA export factor 2-like K14284 NXF; nuclear RNA export factor
E 110561985 Hdac6; histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 110566107 Tdrd3; tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 110547405 Larp4; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 110559491 Larp4b; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 110547560 Dcp1a; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 110556685 Dcp1b; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 110562730 Dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 110549091 Ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 110558531 Edc3; enhancer of mRNA-decapping protein 3 isoform X1 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 110545824 Edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 110565435 Patl1; protein PAT1 homolog 1 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 110540819 Lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 110560100 Lsm2; U6 snRNA-associated Sm-like protein LSm2 isoform X2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 110549257 Lsm3; U6 snRNA-associated Sm-like protein LSm3 isoform X1 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 110553211 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 110540412 LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 110549161 Lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 110561453 Lsm5; U6 snRNA-associated Sm-like protein LSm5 isoform X1 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 110553399 Lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 110555587 Lsm7; U6 snRNA-associated Sm-like protein LSm7 isoform X1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 110560020 Lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 110539932 Xrn1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 110553976 Xrn2; 5'-3' exoribonuclease 2 isoform X3 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 110552037 U8 snoRNA-decapping enzyme isoform X1 K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
E 110541621 U8 snoRNA-decapping enzyme-like K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 110555278 Dcps; m7GpppX diphosphatase isoform X1 K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 110550657 Helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 110564110 Exosc1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4
E 110558738 Exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 110543910 Exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 110562625 Exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 110561186 Exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 110546020 Exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 110563934 Exosc7; exosome complex component RRP42 isoform X1 K12589 RRP42; exosome complex component RRP42
E 110554923 Exosc8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 110559634 Exosc9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 110556436 Dis3; exosome complex exonuclease RRP44 isoform X1 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 110559002 Dis3l; DIS3-like exonuclease 1 isoform X2 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 110548142 Exosc10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 110558956 C1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 110550264 Mphosph6; M-phase phosphoprotein 6 isoform X1 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 110540813 Ddx60; probable ATP-dependent RNA helicase DDX60 isoform X1 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E 110550392 Tent4a; terminal nucleotidyltransferase 4A isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 110560707 Tent4b; terminal nucleotidyltransferase 4B isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 110558831 Zcchc7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 110558761 Mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 110560126 Skic2; superkiller complex protein 2 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 110540169 Skic3; superkiller complex protein 3 K12600 SKI3; superkiller protein 3
E 110552031 Skic8; superkiller complex protein 8 isoform X1 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 110549700 Cnot6l; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 110547366 Cnot6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 110551169 Cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 110560325 Cnot2; CCR4-NOT transcription complex subunit 2 isoform X4 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 110556005 Cnot3; CCR4-NOT transcription complex subunit 3 isoform X4 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 110558571 Cnot4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 110540383 Cnot7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 110563367 Cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 110566616 Cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 110547908 Cnot10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 110559385 Pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
D Other 3'-5' decay factors
E 110547874 Pnldc1; poly(A)-specific ribonuclease PNLDC1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 110556852 Parn; poly(A)-specific ribonuclease PARN isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 110561833 Dhx36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 110546752 Btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 110552069 Tob1; protein Tob1 K14443 TOB; protein Tob/BTG
E 110543892 protein BTG1-like K14443 TOB; protein Tob/BTG
E 110554111 Tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 110566188 Btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 110557561 Btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 110562627 Btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 132650089 protein BTG1-like K14443 TOB; protein Tob/BTG
E 110561713 Csf2; granulocyte-macrophage colony-stimulating factor K05427 CSF2; granulocyte-macrophage colony-stimulating factor
E 110545133 Noct; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 110542604 Eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 110547852 Eri2; ERI1 exoribonuclease 2 isoform X1 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 110555278 Dcps; m7GpppX diphosphatase isoform X1 K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 110560199 Pde12; 2',5'-phosphodiesterase 12 isoform X1 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 110552021 Ireb2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 110550657 Helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 110553769 Helz2; helicase with zinc finger domain 2 isoform X1 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 110560667 Nrde2; nuclear exosome regulator NRDE2 K26109 NRDE2; nuclear exosome regulator NRDE2
E 110550945 Samd4a; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 110564722 Samd4b; protein Smaug homolog 2 K27396 SMG; protein Smaug
E 110563420 Focad; focadhesin isoform X1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 110549725 Rnase1; ribonuclease pancreatic K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 110544166 eosinophil cationic protein-like K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 110544500 eosinophil cationic protein K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 110543247 ribonuclease 2B K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 132656624 eosinophil cationic protein-like K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 132656625 eosinophil cationic protein-like K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 132656626 eosinophil cationic protein-like K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 132656627 eosinophil cationic protein-like K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 110549715 Rnase4; ribonuclease 4 K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 110549728 ribonuclease K6 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 110549705 Rnase11; probable ribonuclease 11 K16633 RNASE11; ribonuclease 11 [EC:3.1.27.-]
E 110550927 Zc3h12c; probable ribonuclease ZC3H12C isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 110540266 Zc3h12a; endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 110563614 Zc3h12d; probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 110543474 Zc3h12b; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 110546717 Drosha; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 110546483 Rexo2; oligoribonuclease, mitochondrial isoform X1 K13288 orn; oligoribonuclease [EC:3.1.-.-]
E 132650037 oligoribonuclease, mitochondrial-like K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 110548611 Eno2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 110555381 Eno1; alpha-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 110557320 Eno3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 110562650 Pnpt1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 110556091 Pfkl; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 110560092 Pfkm; ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 110560913 Pfkp; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 110558461 Hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 110551641 Hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 110558738 Exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 110564110 Exosc1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 110562625 Exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 110563934 Exosc7; exosome complex component RRP42 isoform X1 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024