+E Messenger RNA Biogenesis KO
#
Messenger RNA Biogenesis - Myxococcus xanthus
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
E MXAN_2773 ATPase, AAA family K13525 VCP; transitional endoplasmic reticulum ATPase
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E MXAN_5640 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
E MXAN_3762 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
E MXAN_1479 metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
E MXAN_0024 3'-5' exoribonuclease, VacB/RNase II family K12573 rnr; ribonuclease R [EC:3.1.13.1]
E MXAN_4210 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
E MXAN_7151 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
E MXAN_2808 OB-fold nucleic acid binding domain protein K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D Helicases
E MXAN_2309 rhlE; ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E MXAN_4081 putative ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E MXAN_5230 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E MXAN_3913 deaD; RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E MXAN_5871 dedA; ATP-dependent helicase, DEAD/DEAH-box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E MXAN_1950 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
E MXAN_4839 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E MXAN_4451 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E MXAN_2073 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E MXAN_5636 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
E MXAN_2479 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C Other RNA degradation factors
D Chaperones
E MXAN_3192 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
E MXAN_6671 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
E MXAN_3474 DnaK family protein K04043 dnaK; molecular chaperone DnaK
E MXAN_2747 heat shock protein 70 family protein K04043 dnaK; molecular chaperone DnaK
E MXAN_3016 putative chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
E MXAN_4047 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
E MXAN_5159 DnaK family protein K04043 dnaK; molecular chaperone DnaK
E MXAN_5804 DnaK family protein K04043 dnaK; molecular chaperone DnaK
E MXAN_7025 DnaK family protein K04043 dnaK; molecular chaperone DnaK
E MXAN_3778 DnaK family protein K04043 dnaK; molecular chaperone DnaK
E MXAN_6605 DnaK family protein K04043 dnaK; molecular chaperone DnaK
E MXAN_4895 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E MXAN_4467 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
E MXAN_0056 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
E MXAN_2119 polyphosphate kinase 2, internal deletion K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
E MXAN_2545 pcnB; poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
E MXAN_0390 putative regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
E MXAN_6564 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
E MXAN_3177 hrpA; ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
E MXAN_2148 helicase, DEAD/DEAH family K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
E MXAN_3055 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024