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Transfer RNA Biogenesis - Nitrosomonas europaea
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
C CCA adding factors
D NE1614 cca; Poly A polymerase family:HD domain K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D NE1624 gltX; gltX; glutamate-tRNA synthetase (catalytic subunit)(sye protein) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NE1317 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D NE1149 ileS; t-RNA synthetase, class Ia:Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D NE1139 leuS; t-RNA synthetase, class Ia:Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NE0625 metG1; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NE2356 glnS; Glutamyl-tRNA synthetase:Glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NE2363 glnS; Glutamyl-tRNA synthetase:Glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NE0364 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NE2355 lysS; lysS; putative lysyl-tRNA synthetase protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D NE2252 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D NE1930 alaS; Alanyl-tRNA synthetase:DHHA1 domain K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NE0958 thrS; thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NE0180 serS; tRNA synthetases, class-II (G, H, P and S):Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NE0043 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NE0444 valS; probable valyl-tRNA synthetase (valine--tRNA ligase) protein K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D NE0150 hisS; hisS; histidine-tRNA synthetase protein K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NE0954 pheS; pheS; phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D NE0953 pheT; pheT; phenylalanyl-tRNA synthetase beta chain protein K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NE1431 t-RNA synthetase, class Ib K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NE1727 trpS; t-RNA synthetase, class Ib:Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
C AARS associated factors
D NE0640 hitA; HIT (Histidine triad) family K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D NE0283 possible S-adenosylmethionine-dependent methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D NE0691 tRNA pseudouridine synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D NE0763 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D NE0174 Aminotransferase class-V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D NE0946 SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D NE1976 miaA; tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D NE0386 thdF; GTP-binding protein (HSR1-related):tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D NE2476 gidA; gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D NE0733 selD; AIR synthase related protein:Selenide water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D NE0389 rnpA; Bacterial ribonuclease P protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RNA_47 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
D NE0276 rph; 3' exoribonuclease family K00989 rph; ribonuclease PH [EC:2.7.7.56]
D NE1625 Ribonuclease II domain K01147 rnb; exoribonuclease II [EC:3.1.13.1]
C CCA adding factors
D NE1614 cca; Poly A polymerase family:HD domain K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
D NE1401 ligT; putative 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
B tRNA transport factors
C tRNA export factors
D NE1806 ATPase components of ABC transporters with duplicated ATPase domains K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D NE1139 leuS; t-RNA synthetase, class Ia:Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NE1317 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D NE1431 t-RNA synthetase, class Ib K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NE1727 trpS; t-RNA synthetase, class Ib:Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D NE0958 thrS; thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NE1149 ileS; t-RNA synthetase, class Ia:Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D NE2355 lysS; lysS; putative lysyl-tRNA synthetase protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D NE1930 alaS; Alanyl-tRNA synthetase:DHHA1 domain K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NE0444 valS; probable valyl-tRNA synthetase (valine--tRNA ligase) protein K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D NE0625 metG1; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NE0180 serS; tRNA synthetases, class-II (G, H, P and S):Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NE2252 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NE1187 glyQ; Glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D NE1186 glyS; Glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D NE0043 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NE1624 gltX; gltX; glutamate-tRNA synthetase (catalytic subunit)(sye protein) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NE2356 glnS; Glutamyl-tRNA synthetase:Glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NE2363 glnS; Glutamyl-tRNA synthetase:Glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NE0364 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NE0954 pheS; pheS; phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D NE0953 pheT; pheT; phenylalanyl-tRNA synthetase beta chain protein K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NE0150 hisS; hisS; histidine-tRNA synthetase protein K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
C Trans-editing factors
B tRNA modification factors
C Deaminases
D NE0437 Cytidine and deoxycytidylate deaminase zinc-binding region K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D NE0874 Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
D NE2335 Fe-S oxidoreductases family 1 K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D NE1953 rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D NE0283 possible S-adenosylmethionine-dependent methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D NE1673 trmB; tRNA (guanine-N1-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D NE0386 thdF; GTP-binding protein (HSR1-related):tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D NE2302 rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D NE0775 tRNA/rRNA methyltransferase (SpoU) K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D NE0691 tRNA pseudouridine synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D NE0763 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D NE0963 trmU; trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D NE1490 Uncharacterized protein family UPF0021 K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D NE1407 Uncharacterized protein family UPF0033 K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D NE1451 Hypothetical hesB/yadR/yfhF family K13628 iscA; iron-sulfur cluster assembly protein
D NE0174 Aminotransferase class-V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NE1514 Glycine cleavage T-protein (aminomethyl transferase) K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D NE2476 gidA; gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D NE1976 miaA; tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D NE1140 tsaA; Queuosine biosynthesis protein K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D NE0222 ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D NE1517 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D NE0221 Radical activating enzymes K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D NE2285 conserved hypothetical protein K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D NE1881 DUF208 K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D NE0733 selD; AIR synthase related protein:Selenide water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D NE0732 ybbB; Rhodanese/cdc25 fold K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D NE1141 tgt; tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D NE1022 conserved hypothetical protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D NE1400 yeaZ; Glycoprotease, (M22) metallo-protease family K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D NE0946 SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D NE0225 gcp; Glycoprotease, (M22) metallo-protease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D NE0657 Uncharacterised P-loop hydrolase UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
B tRNA degradation factors
C NE0350 rnr; rnr; exoribonuclease RNAse R (vacB protein) K12573 rnr; ribonuclease R [EC:3.1.13.1]
C NE0172 pnp; pnp; polyribonucleotide nucleotidyltransferase protein K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C NE0498 ntrR2; PIN (PilT N terminus) domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C NE0479 PIN (PilT N terminus) domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C NE0287 vapC; PIN (PilT N terminus) domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024