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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Aspergillus fischeri</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        NFIA_010730 DNA-dependent RNA polymerase II largest subunit, putative	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        NFIA_114650 DNA-dependent RNA polymerase II RPB140	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        NFIA_088270 RNA polymerase II subunit 3	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        NFIA_024820 DNA-directed RNA polymerase II subunit RPB11a, putative	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        NFIA_069090 polymerase (RNA) II (DNA directed) polypeptide D	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        NFIA_098050 RNA polymerase II subunit 7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        NFIA_084150 DNA directed RNA polymerase II 15 kDa subunit, putative	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        NFIA_011310 RNA polymerase subunit	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        NFIA_019580 DNA-directed RNA polymerase I, II, and III subunit Rpb6	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        NFIA_076140 DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        NFIA_104270 metallothionein-I gene transcription activator	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        NFIA_115330 DNA-directed RNA polymerases N/8 kDa subunit superfamily	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        NFIA_010660 transcription factor TFIIA complex subunit Toa1, putative	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        NFIA_090910 transcription initiation factor iia small chain	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        NFIA_066670 transcription initiation protein	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        NFIA_067170 RNA polymerase I and III transcription factor complex component Tbp, putative	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        NFIA_054250 transcription factor TFIID complex 145 kDa subunit, putative	K23358 TAF1; transcription initiation factor TFIID subunit 1, fungi type [EC:2.3.1.48] 
E        NFIA_097760 conserved hypothetical protein	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        NFIA_090120 bromodomain associated protein	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        NFIA_021540 transcription initiation factor TFIID subunit, putative	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        NFIA_038440 transcription initiation factor TFIID complex 60 kDa subunit	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        NFIA_090110 transcription initiation factor TFIID subunit 7, putative	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        NFIA_010820 transcription initiation factor TFIID, 31kD subunit, putative	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        NFIA_075790 TFIID and and SAGA complex TAF10 subunit, putative	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        NFIA_038460 transcription initiation factor TFIID subunit beta, putative	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        NFIA_071160 transcription initiation factor TFIID subunit 12, putative	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        NFIA_016250 transcription initiation factor TFIID subunit 13, putative	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        NFIA_075100 transcription initiation factor subunit (TAF30), putative	K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit 
D      TFIIE
E        NFIA_084080 transcription factor TFIIE complex alpha subunit, putative	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        NFIA_059050 transcription initiation factor TFIIE, beta subunit, putative	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        NFIA_006500 transcription initiation factor IIF subunit alpha, putative	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        NFIA_098220 transcription initiation factor iif, beta subunit	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        NFIA_104530 RNA polymerase II transcription factor related protein, putative	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        NFIA_075690 transcription factor TFIIH subunit Tfb4, putative	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        NFIA_029000 TFIIH and nucleotide excision repair factor 3 complexes subunit (Tfb2), putative	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        NFIA_038790 TFIIH complex helicase Ssl2, putative	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        NFIA_011560 TFIIH complex helicase Rad3, putative	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        NFIA_024670 serine/threonine protein kinase (Kin28), putative	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        NFIA_107260 CDK-activating kinase assembly factor MAT1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        NFIA_080230 cyclin Ccl1, putative	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        NFIA_051360 MED6 mediator sub complex component, putative	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        NFIA_107800 RNA polymerase II mediator complex component Med8, putative	K15130 MED8; mediator of RNA polymerase II transcription subunit 8, fungi type 
E        NFIA_044550 RNA polymerase II mediator complex component SRB4, putative	K15134 SRB4; mediator of RNA polymerase II transcription subunit 17, fungi type 
E        NFIA_052480 RNA polymerase II mediator complex subunit Srb5, putative	K15136 SRB5; mediator of RNA polymerase II transcription subunit 18, fungi type 
D      Middle
E        NFIA_109590 conserved hypothetical protein	K15147 MED5; mediator of RNA polymerase II transcription subunit 5 
E        NFIA_055790 RNA polymerase II mediator complex protein (Med7), putative	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        NFIA_018780 RNA polymerase II mediator complex protein Nut2, putative	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        NFIA_088540 RNA polymerase II transcription mediator complex subunit Srb7, putative	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        NFIA_063240 RNA polymerase II mediator complex subunit Soh1, putative	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        NFIA_082960 RNA polymerase II holoenzyme/mediator complex component Rgr1, putative	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        NFIA_015120 uncharacterized protein	K15160 SIN4; mediator of RNA polymerase II transcription subunit 16, fungi type 
D      CDK-module
E        NFIA_063290 cyclin-dependent protein kinase, putative	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        NFIA_091030 conserved hypothetical protein	K15161 CCNC; cyclin-C 
E        NFIA_071020 uncharacterized protein	K15163 SRB8; mediator of RNA polymerase II transcription subunit 12, fungi type 
E        NFIA_081530 conserved hypothetical protein	K15165 SSN2; mediator of RNA polymerase II transcription subunit 13, fungi type 
D      Other mediators
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        NFIA_103660 histone acetyltransferase (Gcn5), putative	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        NFIA_039510 histone acetylase complex subunit Paf400, putative	K08874 TRRAP; transformation/transcription domain-associated protein 
E        NFIA_011440 SAGA-like transcriptional regulatory complex subunit Spt3, putative	K11313 SUPT3H; transcription initiation protein SPT3 
E        NFIA_066260 Bromodomain protein	K11359 SPT7; transcriptional activator SPT7 
E        NFIA_078230 transcription factor (SPT8), putative	K11360 SPT8; transcriptional activator SPT8 
E        NFIA_008830 conserved hypothetical protein	K11361 SPT20; transcription factor SPT20 
E        NFIA_082830 conserved hypothetical protein	K11362 HFI1; transcriptional coactivator HFI1/ADA1 
E        NFIA_085990 SAGA complex subunit (Ada2), putative	K11314 TADA2A; transcriptional adapter 2-alpha 
E        NFIA_020150 transcriptional regulator Ngg1, putative	K11315 TADA3; transcriptional adapter 3 
E        NFIA_097760 conserved hypothetical protein	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        NFIA_021540 transcription initiation factor TFIID subunit, putative	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        NFIA_038440 transcription initiation factor TFIID complex 60 kDa subunit	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        NFIA_090110 transcription initiation factor TFIID subunit 7, putative	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        NFIA_010820 transcription initiation factor TFIID, 31kD subunit, putative	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        NFIA_075790 TFIID and and SAGA complex TAF10 subunit, putative	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        NFIA_071160 transcription initiation factor TFIID subunit 12, putative	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        NFIA_012220 SAGA complex component (Sgf29), putative	K11364 SGF29; SAGA-associated factor 29 
E        NFIA_082490 SAGA complex component (Sgf73), putative	K11365 SGF73; SAGA-associated factor 73 
E        NFIA_015380 chromodomain helicase (Chd1), putative	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        NFIA_058670 ubiquitin C-terminal hydrolase Ubp8, putative	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        NFIA_059370 nuclear mRNA splicing factor, putative	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        NFIA_092140 SWI-SNF complex subunit (Snf5), putative	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        NFIA_026720 RSC complex subunit (RSC8), putative	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        NFIA_018400 SWI-SNF complex subunit (BAF60b), putative	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
D      SWI/SNF complex
E        NFIA_065920 ARID/BRIGHT domain protein (SWI1), putative	K11771 SWI1; SWI/SNF chromatin-remodeling complex subunit SWI1 
E        NFIA_036800 RSC complex subunit (Sth1), putative	K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] 
E        NFIA_092140 SWI-SNF complex subunit (Snf5), putative	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        NFIA_003500 chromatin remodeling complex subunit (Arp9), putative	K11768 ARP9; actin-related protein 9 
E        NFIA_075100 transcription initiation factor subunit (TAF30), putative	K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit 
D      RSC complex
E        NFIA_071630 RSC complex subunit (RSC1), putative	K11756 RSC1_2; chromatin structure-remodeling complex subunit RSC1/2 
E        NFIA_003050 chromatin structure remodeling complex protein RSC3, putative	K11758 RSC3_30; chromatin structure-remodeling complex subunit RSC3/30 
E        NFIA_018290 nuclear localization protein NPL6, putative	K11761 NPL6; chromatin structure-remodeling complex protein RSC7 
E        NFIA_053480 chromatin remodeling complex subunit (Rsc9), putative	K11763 RSC9; chromatin structure-remodeling complex subunit RSC9 
E        NFIA_003500 chromatin remodeling complex subunit (Arp9), putative	K11768 ARP9; actin-related protein 9 
E        NFIA_110020 RSC complex subunit Sfh1, putative	K11770 SFH1; chromatin structure-remodeling complex subunit SFH1 
E        NFIA_036800 RSC complex subunit (Sth1), putative	K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] 
D      Others
E        NFIA_083200 RNA polymerase II transcriptional coactivator, putative	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
C    Other transcription-related factors
D      Transcription elongation factors
E        NFIA_069480 transcription elongation factor S-II	K03145 TFIIS; transcription elongation factor S-II 
E        NFIA_036420 transcriptional elongation protein Spt4, putative	K15171 SUPT4H1; transcription elongation factor SPT4 
E        NFIA_107670 transcription initiation protein spt5	K15172 SUPT5H; transcription elongation factor SPT5 
E        NFIA_071340 transcription elongation factor SPT6, putative	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        NFIA_017240 mRNA cleavage factor complex component Pcf11, putative	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        NFIA_096750 cleavage and polyadenylation specificity factor subunit A, putative	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        NFIA_008560 cleavage and polyadenylation specifity factor, 73 kDa subunit, putative	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        NFIA_021820 mRNA cleavage and polyadenylation specificity factor complex subunit, putative	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        NFIA_080760 serine/threonine protein phosphatase, putative	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        NFIA_019780 serine/threonine protein phosphatase PP1, putative	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        NFIA_097150 uncharacterized protein	K06100 SYMPK; symplekin 
E        NFIA_080570 transcription/RNA-processing factor Ssu72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        NFIA_011770 5'->3' exoribonculease Dhp1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        NFIA_051630 HLA class III protein Dom3z	K14845 RAI1; RAT1-interacting protein 
E        NFIA_106020 conserved hypothetical protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        NFIA_037860 RNA binding protein Nrd1, putative	K15560 NRD1; protein NRD1 
E        NFIA_048270 tRNA-splicing endonuclease, putative	K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] 
E        NFIA_084160 peptidyl-prolyl cis/trans isomerase	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        NFIA_086300 conserved hypothetical protein	K15174 PAF1; RNA polymerase II-associated factor 1 
E        NFIA_086480 Pol II transcription elongation factor subunit Cdc73, putative	K15175 CDC73; parafibromin 
E        NFIA_037260 RNA polymerase II transcription elongation factor (Ctr9), putative	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        NFIA_016460 conserved hypothetical protein	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        NFIA_034270 RNA polymerase II transcription elongation factor Rtf1p, putative	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        NFIA_105670 conserved hypothetical protein	K15183 ELL; RNA polymerase II elongation factor ELL 
D      Little elongation complex (LEC)
E        NFIA_105670 conserved hypothetical protein	K15183 ELL; RNA polymerase II elongation factor ELL 
D      Brd4/P-TEFb complex
D      BUR kinase complex
E        NFIA_037540 protein kinase, putative	K15562 BUR1; serine/threonine-protein kinase BUR1 [EC:2.7.11.22 2.7.11.23] 
E        NFIA_067220 cyclin, N-terminal domain protein, putative	K15563 BUR2; protein BUR2 
D      CTDK-I complex
E        NFIA_038950 protein kinase, putative	K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23] 
E        NFIA_017680 cyclin, putative	K15564 CTK2; CTD kinase subunit beta 
E        NFIA_087310 conserved hypothetical protein	K15565 CTK3; CTD kinase subunit gamma 
D      7SK RNP complex
D      DBIRD complex
D      Others
E        NFIA_018890 TBP associated factor (Mot1), putative	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        NFIA_003510 CBF/NF-Y family transcription factor, putative	K21751 DR1; down-regulator of transcription 1 
E        NFIA_089410 histone-like transcription factor (CBF/NF-Y), putative	K21752 DRAP1; Dr1-associated corepressor 
E        NFIA_065890 RNA Polymerase II CTD phosphatase Fcp1, putative	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        NFIA_019970 general stress response phosphoprotein phosphatase Psr1, putative	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        NFIA_013250 transcriptional elongation factor Iws1, putative	K17498 SPN1; transcription factor SPN1 
E        NFIA_071310 transcription factor Rba50, putative	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        NFIA_085710 conserved hypothetical protein	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        NFIA_051720 wd-repeat protein	K06666 TUP1; general transcriptional corepressor TUP1 
E        NFIA_048320 SRF-type transcription factor (Umc1), putative	K12412 MCM1; pheromone receptor transcription factor 
E        NFIA_015010 ATP binding protein, putative	K24104 GPN; GPN-loop GTPase 
E        NFIA_104410 ATP binding protein, putative	K24104 GPN; GPN-loop GTPase 
E        NFIA_056400 ATP binding protein, putative	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        NFIA_062940 DNA-directed RNA polymerase III largest subunit, putative	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        NFIA_022140 DNA-directed rna polymerase III subunit	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        NFIA_088900 DNA-directed RNA polymerase I and III subunit Rpc40, putative	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        NFIA_051140 DNA-directed RNA polymerase I and III 14 KDA polypeptide	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        NFIA_037900 DNA directed RNA polymerase III subunit Rpc82, putative	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        NFIA_091430 DNA-directed RNA polymerase III RPC4, putative	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        NFIA_114580 DNA-directed RNA polymerase III subunit Rpc34, putative	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        NFIA_079990 conserved hypothetical protein	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        NFIA_097080 DNA-directed rna polymerase III 25 kD polypeptide	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        NFIA_018330 RNA polymerase III subunit C11, putative	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        NFIA_011310 RNA polymerase subunit	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        NFIA_019580 DNA-directed RNA polymerase I, II, and III subunit Rpb6	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        NFIA_076140 DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        NFIA_104270 metallothionein-I gene transcription activator	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        NFIA_115330 DNA-directed RNA polymerases N/8 kDa subunit superfamily	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        NFIA_019590 C2H2 transcription factor (TFIIIA), putative	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        NFIA_067170 RNA polymerase I and III transcription factor complex component Tbp, putative	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        NFIA_064570 transcription factor TFIIIB complex subunit Brf1, putative	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        NFIA_050940 transcription factor TFIIIB component, putative	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        NFIA_019750 RNA polymerase III transcription factor TFIIIC subunit (Tfc4), putative	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        NFIA_039530 RNA polymerase III transcription factor subunit, putative	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
D      TFIIIC, fungi type
E        NFIA_039530 RNA polymerase III transcription factor subunit, putative	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        NFIA_019750 RNA polymerase III transcription factor TFIIIC subunit (Tfc4), putative	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        NFIA_066890 transcription factor TFIIIC complex subunit Tfc6, putative	K15205 TFC6; transcription factor C subunit 6 
E        NFIA_009590 phosphoglycerate mutase family protein	K15206 TFC7; transcription factor C subunit 7 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
D      Octamer transcription factors
D      Others
E        NFIA_033840 conserved hypothetical protein	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        NFIA_011570 DNA-directed RNA polymerase I subunit (Rpa190), putative	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        NFIA_053940 DNA-directed RNA polymerase I subunit beta (Rpa2), putative	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        NFIA_088900 DNA-directed RNA polymerase I and III subunit Rpc40, putative	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        NFIA_051140 DNA-directed RNA polymerase I and III 14 KDA polypeptide	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        NFIA_036850 conserved hypothetical protein	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        NFIA_114810 RNA polymerase I subunit Rpa43, putative	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        NFIA_076590 CBF/NF-Y family transcription factor, putative	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
D      Pol I, II, III common subunits
E        NFIA_011310 RNA polymerase subunit	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        NFIA_019580 DNA-directed RNA polymerase I, II, and III subunit Rpb6	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        NFIA_076140 DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        NFIA_104270 metallothionein-I gene transcription activator	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        NFIA_115330 DNA-directed RNA polymerases N/8 kDa subunit superfamily	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        NFIA_067170 RNA polymerase I and III transcription factor complex component Tbp, putative	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
D      Transcription initiation factors
E        NFIA_022030 RNA polymerase I-specific transcription initiation factor RRN3 family protein	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        NFIA_026730 conserved hypothetical protein	K15217 RRN5; RNA polymerase I-specific transcription initiation factor RRN5 
E        NFIA_016770 conserved hypothetical protein	K15218 RRN6; RNA polymerase I-specific transcription initiation factor RRN6 
E        NFIA_020670 uncharacterized protein	K15219 RRN7; RNA polymerase I-specific transcription initiation factor RRN7 
E        NFIA_086190 conserved hypothetical protein	K15222 RRN11; RNA polymerase I-specific transcription initiation factor RRN11 
E        NFIA_022630 SWIB/MDM2 domain protein	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        NFIA_036420 transcriptional elongation protein Spt4, putative	K15171 SUPT4H1; transcription elongation factor SPT4 
E        NFIA_107670 transcription initiation protein spt5	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        NFIA_102900 SNF2 family helicase/ATPase, putative	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        NFIA_076090 nucleosome remodeling complex ATPase subunit (Snf2h), putative	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
E        NFIA_038950 protein kinase, putative	K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23] 
E        NFIA_017680 cyclin, putative	K15564 CTK2; CTD kinase subunit beta 
E        NFIA_087310 conserved hypothetical protein	K15565 CTK3; CTD kinase subunit gamma 
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        NFIA_066670 transcription initiation protein	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        NFIA_084080 transcription factor TFIIE complex alpha subunit, putative	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: April 9, 2024