+E Ribosome biogenesis KO
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Ribosome Biogenesis - Nostoc punctiforme
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D Npun_F1233 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Npun_R1331 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C Npun_F0483 GTP-binding protein Era K03595 era; GTPase
C Npun_F4323 small GTP-binding protein K03595 era; GTPase
C Npun_F3262 small GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C Npun_R5775 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C Npun_F0080 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
C Npun_F5850 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D Npun_R5816 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D Npun_R4912 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Npun_F4644 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Npun_F4991 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Npun_F0820 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Npun_R5481 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Npun_R4969 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Npun_R2378 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Npun_R5264 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D Npun_R1190 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Npun_F1147 putative RNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D Npun_F3954 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Npun_R5264 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D Npun_R0877 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Npun_R0629 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Npun_R3812 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Npun_F0754 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C Npun_R5988 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C Npun_F5731 GCN5-related N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C Npun_F1948 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C Npun_F4514 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C Npun_R5217 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C Npun_F1233 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Npun_R1331 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Npun_R3890 RNA binding S1 domain protein K08300 rne; ribonuclease E [EC:3.1.26.12]
C Npun_F0324 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C Npun_R1191 ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C Npun_F4515 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C Npun_F0483 GTP-binding protein Era K03595 era; GTPase
C Npun_F4323 small GTP-binding protein K03595 era; GTPase
C Npun_F0125 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C Npun_R1702 small GTP-binding protein K03977 engA; GTPase
C Npun_F3262 small GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C Npun_R4633 GTP-binding protein, HSR1-related K14540 rbgA; ribosome biogenesis GTPase A
C Npun_F4800 GTP-binding protein, HSR1-related K03665 hflX; GTPase
C Npun_F0224 GTP-binding protein, HSR1-related K03665 hflX; GTPase
B Other maturation factors
C Npun_R3855 SUA5/yciO/yrdC, N-terminal domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C Npun_F5595 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C Npun_F0703 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C Npun_R5776 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
C Npun_R6354 RNA-binding S4 domain protein K14761 rlbA; ribosome-associated protein
C Npun_R4341 iojap-like protein K09710 ybeB; ribosome-associated protein
C Npun_F1345 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
C Npun_R6366 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C Npun_R1583 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024