+F Repair protein KO #

  DNA Repair and Recombination Proteins - Nostoc punctiforme

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Npun_F2029 DNA photolyase, FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Npun_F6479 deoxyribodipyrimidine photolyase-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Npun_AR235 DNA photolyase, FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Npun_F4036 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Npun_R5795 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Npun_R5813 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Npun_F5834 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Npun_F5226 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Npun_F2029 DNA photolyase, FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Npun_F6479 deoxyribodipyrimidine photolyase-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Npun_AR235 DNA photolyase, FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Npun_R3661 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E Npun_F1825 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Npun_F5227 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Npun_R3936 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Npun_F4036 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Npun_R2707 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E Npun_F2937 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E Npun_F4050 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Npun_R4754 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Npun_F0173 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E Npun_F6100 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Npun_R0467 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E Npun_R3957 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E Npun_R1007 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Npun_F4439 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Npun_F0173 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Npun_F4985 DNA-directed RNA polymerase, beta subunit RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Npun_F4986 DNA-directed RNA polymerase, gamma subunit RpoC1 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Npun_F4987 DNA-directed RNA polymerase, beta'' subunit rpoC2 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Npun_R4366 DNA-directed RNA polymerase, alpha subunit RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Npun_F3405 RNA polymerase, alpha subunit domain protein K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Npun_R6071 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Npun_R5494 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Npun_R3761 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E Npun_F0104 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E Npun_F3251 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E Npun_R2911 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Npun_R2910 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Npun_F4872 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Npun_F5684 nucleic acid binding, OB-fold, tRNA/helicase-type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Npun_R0034 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Npun_F4117 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Npun_F6434 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Npun_F4123 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Npun_F0173 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Npun_R1007 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Npun_F4439 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Npun_F1842 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E Npun_F2473 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Npun_R0701 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Npun_R1196 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Npun_AR019 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Npun_F2914 recA protein K03553 recA; recombination protein RecA E Npun_R3568 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Npun_F4406 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Npun_R5350 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Npun_R0306 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Npun_F1577 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E Npun_R5590 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Npun_F2914 recA protein K03553 recA; recombination protein RecA E Npun_R5787 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E Npun_R6169 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E Npun_R5567 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Npun_F4050 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Npun_R4754 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Npun_F4346 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E Npun_F4120 recombination protein RecR K06187 recR; recombination protein RecR E Npun_R4676 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Npun_R3568 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Npun_F4406 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Npun_R5350 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E Npun_R2692 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E Npun_F1577 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E Npun_R5590 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Npun_F0025 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Npun_R6377 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Npun_F6373 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Npun_F1754 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F Npun_R4571 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Npun_F5010 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F Npun_R3129 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F Npun_R3182 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F Npun_BR084 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Npun_F4050 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Npun_R4754 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Npun_F4346 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F Npun_F4120 recombination protein RecR K06187 recR; recombination protein RecR F Npun_F0173 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F Npun_R3585 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Npun_F0932 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Npun_AF186 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Npun_F6100 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Npun_R0467 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D Npun_F2914 recA protein K03553 recA; recombination protein RecA D Npun_F4481 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Npun_R4676 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Npun_F1842 single-strand binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D Npun_F5207 putative ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Npun_F3478 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D Npun_R5795 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Npun_R5813 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Npun_F5834 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024