+F Repair protein KO
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DNA Repair and Recombination Proteins - Nostoc punctiforme
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Npun_F2029 DNA photolyase, FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Npun_F6479 deoxyribodipyrimidine photolyase-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Npun_AR235 DNA photolyase, FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Npun_F4036 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D Npun_R5795 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Npun_R5813 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Npun_F5834 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Npun_F5226 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Npun_F2029 DNA photolyase, FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Npun_F6479 deoxyribodipyrimidine photolyase-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Npun_AR235 DNA photolyase, FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Npun_R3661 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E Npun_F1825 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E Npun_F5227 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E Npun_R3936 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E Npun_F4036 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Npun_R2707 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E Npun_F2937 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E Npun_F4050 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Npun_R4754 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E Npun_F0173 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E Npun_F6100 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E Npun_R0467 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
E Npun_R3957 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
E Npun_R1007 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Npun_F4439 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Npun_F0173 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F Npun_F4985 DNA-directed RNA polymerase, beta subunit RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F Npun_F4986 DNA-directed RNA polymerase, gamma subunit RpoC1 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F Npun_F4987 DNA-directed RNA polymerase, beta'' subunit rpoC2 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F Npun_R4366 DNA-directed RNA polymerase, alpha subunit RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F Npun_F3405 RNA polymerase, alpha subunit domain protein K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F Npun_R6071 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F Npun_R5494 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Npun_R3761 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E Npun_F0104 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E Npun_F3251 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E Npun_R2911 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E Npun_R2910 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E Npun_F4872 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E Npun_F5684 nucleic acid binding, OB-fold, tRNA/helicase-type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E Npun_R0034 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E Npun_F4117 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E Npun_F6434 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E Npun_F4123 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E Npun_F0173 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E Npun_R1007 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Npun_F4439 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Npun_F1842 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E Npun_F2473 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E Npun_R0701 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E Npun_R1196 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E Npun_AR019 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E Npun_F2914 recA protein K03553 recA; recombination protein RecA
E Npun_R3568 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E Npun_F4406 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Npun_R5350 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E Npun_R0306 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E Npun_F1577 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E Npun_R5590 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E Npun_F2914 recA protein K03553 recA; recombination protein RecA
E Npun_R5787 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E Npun_R6169 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E Npun_R5567 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E Npun_F4050 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Npun_R4754 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Npun_F4346 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E Npun_F4120 recombination protein RecR K06187 recR; recombination protein RecR
E Npun_R4676 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E Npun_R3568 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E Npun_F4406 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Npun_R5350 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E Npun_R2692 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E Npun_F1577 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E Npun_R5590 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F Npun_F0025 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F Npun_R6377 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F Npun_F6373 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F Npun_F1754 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F Npun_R4571 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F Npun_F5010 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F Npun_R3129 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F Npun_R3182 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F Npun_BR084 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F Npun_F4050 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Npun_R4754 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Npun_F4346 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F Npun_F4120 recombination protein RecR K06187 recR; recombination protein RecR
F Npun_F0173 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F Npun_R3585 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Npun_F0932 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Npun_AF186 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Npun_F6100 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F Npun_R0467 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D Npun_F2914 recA protein K03553 recA; recombination protein RecA
D Npun_F4481 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Npun_R4676 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Npun_F1842 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D Npun_F5207 putative ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D Npun_F3478 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D Npun_R5795 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Npun_R5813 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Npun_F5834 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024