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Transfer RNA Biogenesis - Pyrococcus abyssi
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
D PAB2126 RNAse P protein subunit P29/POP4 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D PAB0467 RNAse P subunit P14 ortholog K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D PAB1136 Ribonuclease P subunit rpp30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D PAB0385 RNAse P protein subunit RPR2 K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D PAB0728 Putative sulfatase, ATSA/ELAC family K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D PAB0383 rtcB homolog, intein containing K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D PAB1946 Hypothetical protein K24956 ZBTB8OS; protein archease
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
D PAB0465 tuf; tuf translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D PAB0323 gltX; gltX glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PAB1724 proS prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PAB0616 ileS; ileS isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PAB1782 leuS leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PAB2364 metS; metS methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PAB0469 argS; argS arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PAB0646 aspS; aspS aspartyl-tRNA synthetase K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D PAB1245 alaS alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PAB0066 alaRS-like alanyl-tRNA synthetase related protein (fragment) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PAB1190 alaRS-like alanyl-tRNA synthetase related protein (fragment) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PAB1440 alaRS-like alanyl-tRNA synthetase related protein (fragment) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PAB2203 asnS asparaginyl-tRNA synthetase (EC 6.1.1.22) (asparagine--tRNA ligase) (ASNRS) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PAB2356 asnS-like; asnS-like asparaginyl-tRNA synthetase related protein K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PAB0380 glyS; glyS glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D PAB1490 thrS threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PAB0881 serS; serS seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PAB0931 cysS; cysS cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PAB1255 valS valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PAB1100 hisS; hisS histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PAB2426 pheS; pheS phenylalanyl-tRNA synthetase, subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PAB2427 pheT; pheT phenylalanyl-tRNA synthetase, subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PAB1728 tyrS tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PAB1111 trpS; trpS tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D PAB2349 Hypothetical protein K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
D PAB1134 Hypothetical protein, UPF0004 family K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
C Methyltransferases
D PAB2092 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D PAB1173 Sun/NOL1/NOP nucleolar protein K21971 NSUN6; methyltransferase NSUN6 [EC:2.1.1.-]
D PAB2272 Hypothetical protein, Met-10+ like protein K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PAB0505 Hypothetical protein, Met-10+ like protein K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PAB0283 pimT-like; SAM-dependent methyltransferase, putative K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D PAB2039 Radical SAM family protein K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
D PAB1538 Hypothetical protein, Met-10+ like protein K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114]
D PAB0615 Hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
D PAB2159 Hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
C Psudouridine synthases
D PAB1701 truA pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PAB0356 trub; truB tRNA pseudouridine synthase II K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PAB0430 Hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D PAB2391 Hypothetical protein, containing THUMP domain K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25]
C Thiolation factors
C KEOPS/EKC complex
D PAB1047 Hypothetical protein K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D PAB1159 gcp; gcp O-sialoglycoprotein endopeptidase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
C Elongator complex
D PAB1215 N-acetyltransferase, GNAT family K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
C Elongator related proteins
C Other tRNA modification factors
D PAB1302 Putative translation factor, SUA5 related protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PAB0046 Hypothetical protein, sharing a conserved domain with thiamine biosynthesis protein thiI K06963 TAN1; tRNA acetyltransferase TAN1
D PAB0051 Hypothetical protein sharing a conserved domain with thiamine biosynthesis protein thiI K06963 TAN1; tRNA acetyltransferase TAN1
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D PAB0263 Conserved archaebacterial protein K09006 K09006; RNA-free ribonuclease P [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D PAB0728 Putative sulfatase, ATSA/ELAC family K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D PAB0063 cca; cca tRNA nucleotidyltransferase (CCA adding enzyme) K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72]
B tRNA spricing factors
C tRNA splicing endonucleases
D PAB1099 endA; Archaeal tRNA intron endonuclease (EC 3.1.27.9) K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16]
C tRNA splicing ligases
D PAB0383 rtcB homolog, intein containing K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
D PAB0062 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D PAB2247 Probable RNA 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D PAB1782 leuS leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PAB0139 lysS; lysS lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D PAB1724 proS prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D PAB1728 tyrS tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PAB1111 trpS; trpS tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PAB1490 thrS threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PAB0616 ileS; ileS isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PAB1245 alaS alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PAB0066 alaRS-like alanyl-tRNA synthetase related protein (fragment) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PAB1190 alaRS-like alanyl-tRNA synthetase related protein (fragment) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PAB1440 alaRS-like alanyl-tRNA synthetase related protein (fragment) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PAB1255 valS valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PAB2364 metS; metS methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PAB0881 serS; serS seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PAB0931 cysS; cysS cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PAB0323 gltX; gltX glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PAB0469 argS; argS arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PAB2426 pheS; pheS phenylalanyl-tRNA synthetase, subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PAB2427 pheT; pheT phenylalanyl-tRNA synthetase, subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PAB1100 hisS; hisS histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PAB2203 asnS asparaginyl-tRNA synthetase (EC 6.1.1.22) (asparagine--tRNA ligase) (ASNRS) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PAB2356 asnS-like; asnS-like asparaginyl-tRNA synthetase related protein K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
C Trans-editing factors
D PAB2349 Hypothetical protein K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferases
C Methyltransferases
D PAB0719 RNA methyltransferase, putative K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D PAB1866 Hypothetical protein K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257]
D PAB0523 Nucleolar protein from the nop2 family K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-]
D PAB0880 Hypothetical protein K15566 trm10; tRNA (adenine9-N1/guanine9-N1)-methyltransferase [EC:2.1.1.218 2.1.1.221]
D PAB0923 Putative RNA methylase, UPF0020 family K16318 trm14; tRNA (guanine6-N2)-methyltransferase [EC:2.1.1.256]
D PAB1283 Methylase, puative RNA modification protein K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213]
D PAB1040 Uncharacterized ArCR K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206]
D PAB1947 Sun/NOL1/NOP2 nucleolar protein K22446 K22446; tRNA (cytosine49-C5)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D PAB1701 truA pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PAB0356 trub; truB tRNA pseudouridine synthase II K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PAB0430 Hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D PAB1092 Predicted ATPase of the PP-loop superfamilyl K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
C KEOPS/EKC complex
D PAB1047 Hypothetical protein K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D PAB1159 gcp; gcp O-sialoglycoprotein endopeptidase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D PAB1522 Hypothetical protein K09119 cgi121; KEOPS complex subunit Cgi121
D PAB3073 Hypothetical protein K09741 pcc1; KEOPS complex subunit Pcc1
C Other tRNA modification factors
D PAB2286 Hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PAB1123 6-pyruvoyl tetrahydrobiopterin synthase related protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PAB1446 Radical SAM family protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PAB0740 tgtA; Queuine-archaeosine tRNA ribosyltransferase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]
D PAB0226 thii; thiI thiamin biosynthesis protein thiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PAB0561 thiI-like; thiI-like thiamin biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PAB0247 Predicted DNA-binding protein K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22]
D PAB2428 Acetyltransferase (GNAT) family, containing ATP/GTP-binding site motif A K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D PAB1302 Putative translation factor, SUA5 related protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
B tRNA degradation factors
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024