+D
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Transfer RNA Biogenesis - Pyrococcus horikoshii
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
D PH1771 PH1771; 127aa long hypothetical protein K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D PH1481 PH1481; 120aa long hypothetical protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D PH1877 PH1877; 212aa long hypothetical protein K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D PH1601 PH1601; 120aa long hypothetical protein K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D PH1151 PH1151; 307aa long hypothetical sulfatase K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D PH1602 PH1602; 871aa long hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D PH1536 PH1536; 142aa long hypothetical protein K24956 ZBTB8OS; protein archease
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
D PH1484 PH1484; 428aa long hypothetical elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D PH1686 PH1686; 570aa long hypothetical glutaminyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PH1006 PH1006; 480aa long hypothetical prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PH1065 PH1065; 1066aa long hypothetical isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PH0965 PH0965; 967aa long hypothetical leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PH0993 PH0993; 723aa long hypothetical methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PH1478 PH1478; 629aa long hypothetical arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PH1020 PH1020; 438aa long hypothetical aspartyl-tRNA synthetase K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D PH0297 PH0297; 915aa long hypothetical alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PH0108 PH0108; 216aa long hypothetical alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PH0574 PH0574; 157aa long hypothetical alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PH1969 PH1969; 404aa long hypothetical alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PH0241 PH0241; 434aa long hypothetical asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PH0270 PH0270; 294aa long hypothetical asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PH1614 PH1614; 570aa long hypothetical glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D PH0699 PH0699; 625aa long hypothetical threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PH0710 PH0710; 460aa long hypothetical seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PH0636 PH0636; 476aa long hypothetical cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PH0314 PH0314; 896aa long hypothetical valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PH0290 PH0290; 431aa long hypothetical histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PH0658 PH0658; 499aa long hypothetical phenylalanyl-tRNA synthetase subunit alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PH0657 PH0657; 556aa long hypothetical phenylalanyl-tRNA synthetase subunit beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PH1011 PH1011; 375aa long hypothetical tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PH1921 PH1921; 301aa long hypothetical tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D PH0006 PH0006; 274aa long hypothetical protein K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
D PH1875 PH1875; 432aa long hypothetical protein K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
C Methyltransferases
D PH1829 PH1829; 381aa long hypothetical N2,N2-dimethylguanosine tRNA methyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D PH1991 PH1991; 389aa long hypothetical nucleolar protein K21971 NSUN6; methyltransferase NSUN6 [EC:2.1.1.-]
D PH0115 PH0115; 296aa long hypothetical protein K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PH1416 PH1416; 330aa long hypothetical protein K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PH1858 PH1858; 253aa long hypothetical protein K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D PH1705 PH1705; 342aa long hypothetical protein K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
D PH0793 PH0793; 278aa long hypothetical protein K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114]
D PH1069 PH1069; 200aa long hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
D PH1887 PH1887; 206aa long hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
C Psudouridine synthases
D PH1242 PH1242; 262aa long hypothetical pseudouridylate synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PH1644 PH1644; 334aa long hypothetical centromere/microtubule binding protein K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PH1538 PH1538; 409aa long hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D PH0962 PH0962; 407aa long hypothetical protein K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25]
C Thiolation factors
C KEOPS/EKC complex
D PH0445 PH0445; 219aa long hypothetical protein K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D PH1987 PH1987; 324aa long hypothetical O-sialoglycoprotein endopeptidase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
C Elongator complex
D PH1867 PH1867; 617aa long hypothetical protein K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
C Elongator related proteins
C Other tRNA modification factors
D PH0435 PH0435; 340aa long hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PH0080 PH0080; 355aa long hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1
D PH0084 PH0084; 158aa long hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D PH1839 PH1839; 221aa long hypothetical protein K09006 K09006; RNA-free ribonuclease P [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D PH1151 PH1151; 307aa long hypothetical sulfatase K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D PH0101 PH0101; 481aa long hypothetical protein K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72]
B tRNA spricing factors
C tRNA splicing endonucleases
D PH0295 PH0295; 170aa long hypothetical protein K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16]
C tRNA splicing ligases
D PH1602 PH1602; 871aa long hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
D PH0099 PH0099; 184aa long hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D PH0160 PH0160; 177aa long hypothetical protein K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D PH0965 PH0965; 967aa long hypothetical leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PH0224 PH0224; 523aa long hypothetical lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D PH1006 PH1006; 480aa long hypothetical prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D PH1011 PH1011; 375aa long hypothetical tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PH1921 PH1921; 301aa long hypothetical tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PH0699 PH0699; 625aa long hypothetical threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PH1065 PH1065; 1066aa long hypothetical isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PH0297 PH0297; 915aa long hypothetical alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PH0108 PH0108; 216aa long hypothetical alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PH0574 PH0574; 157aa long hypothetical alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PH1969 PH1969; 404aa long hypothetical alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PH0314 PH0314; 896aa long hypothetical valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PH0993 PH0993; 723aa long hypothetical methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PH0710 PH0710; 460aa long hypothetical seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PH0636 PH0636; 476aa long hypothetical cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PH1686 PH1686; 570aa long hypothetical glutaminyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PH1478 PH1478; 629aa long hypothetical arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PH0658 PH0658; 499aa long hypothetical phenylalanyl-tRNA synthetase subunit alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PH0657 PH0657; 556aa long hypothetical phenylalanyl-tRNA synthetase subunit beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PH0290 PH0290; 431aa long hypothetical histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PH0241 PH0241; 434aa long hypothetical asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PH0270 PH0270; 294aa long hypothetical asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
C Trans-editing factors
D PH0006 PH0006; 274aa long hypothetical protein K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferases
C Methyltransferases
D PH1137 PH1137; 407aa long hypothetical RNA methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D PH1401 PH1401; 203aa long hypothetical protein K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257]
D PH1374 PH1374; 315aa long hypothetical proliferating-cell nucleolar protein p120 K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-]
D PH0711 PH0711; 419aa long hypothetical protein K15566 trm10; tRNA (adenine9-N1/guanine9-N1)-methyltransferase [EC:2.1.1.218 2.1.1.221]
D PH0644 PH0644; 364aa long hypothetical protein K16318 trm14; tRNA (guanine6-N2)-methyltransferase [EC:2.1.1.256]
D PH0338 PH0338; 329aa long hypothetical protein K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213]
D PH0461 PH0461; 206aa long hypothetical protein K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206]
D PH1537 PH1537; 312aa long hypothetical nucleolar protein K22446 K22446; tRNA (cytosine49-C5)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D PH1242 PH1242; 262aa long hypothetical pseudouridylate synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PH1644 PH1644; 334aa long hypothetical centromere/microtubule binding protein K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PH1538 PH1538; 409aa long hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D PH0300 PH0300; 310aa long hypothetical protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
C KEOPS/EKC complex
D PH0445 PH0445; 219aa long hypothetical protein K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D PH1987 PH1987; 324aa long hypothetical O-sialoglycoprotein endopeptidase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D PH0770 PH0770; 154aa long hypothetical protein K09119 cgi121; KEOPS complex subunit Cgi121
C Other tRNA modification factors
D PH0085 PH0085; 269aa long hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PH1939 PH1939; 157aa long hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PH0635 PH0635; 254aa long hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PH1116 PH1116; 582aa long hypothetical protein K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]
D PH1313 PH1313; 307aa long hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PH1786 PH1786; 201aa long hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PH1812 PH1812; 424aa long hypothetical protein K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22]
D PH0788 PH0788; 816aa long hypothetical protein K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D PH0435 PH0435; 340aa long hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
B tRNA degradation factors
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024