+E Ribosome biogenesis KO
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Ribosome Biogenesis - Prochlorococcus marinus MIT 9215
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D P9215_18771 rnc; putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C P9215_15091 era; GTP-binding protein ERA K03595 era; GTPase
C P9215_17121 GTPase SAR1-like protein K03595 era; GTPase
C P9215_02381 obg; GTP1/OBG family protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C P9215_17611 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C P9215_00081 nusB; Antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C P9215_02241 nusG; transcription antitermination protein, NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D P9215_09571 ksgA; putative rRNA (adenine-N6,N6)-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D P9215_05051 sun; Sun protein (Fmu protein) K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D P9215_11941 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D P9215_07531 Conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D P9215_17431 gidB; putative glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D P9215_01891 Predicted S-adenosylmethionine-dependent methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D P9215_14071 putative tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D P9215_17321 Predicted rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D P9215_09421 spoU; RNA methyltransferase TrmH, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D P9215_09551 Conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D P9215_00641 Putative RNA methylase family UPF0020 K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D P9215_17501 Predicted Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D P9215_17321 Predicted rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D P9215_02111 rluD; putative pseudouridylate synthase specific to ribosomal large subunit K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D P9215_13041 rsuA; 16S rRNA uridine-516 pseudouridylate synthase-like protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C P9215_12251 rimI; putative ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C P9215_03581 rimI; GCN5-related N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C P9215_18791 rimM; possible 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C P9215_01181 possible Fe-S oxidoreductase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C P9215_15821 prmA; putative methyltransferase for Ribosomal protein L11 K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C P9215_18771 rnc; putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C P9215_17691 rne; Ribonuclease G and E K08300 rne; ribonuclease E [EC:3.1.26.12]
C P9215_08861 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C P9215_09411 Conserved hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C P9215_12371 srmB; putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C P9215_15091 era; GTP-binding protein ERA K03595 era; GTPase
C P9215_17121 GTPase SAR1-like protein K03595 era; GTPase
C P9215_00181 Predicted GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C P9215_04681 GTP-binding protein (HSR1-related) K03977 engA; GTPase
C P9215_02381 obg; GTP1/OBG family protein K03979 obgE; GTPase [EC:3.6.5.-]
C P9215_02121 Predicted GTPase K14540 rbgA; ribosome biogenesis GTPase A
B Other maturation factors
C P9215_03441 sua5; Putative translation factor (SUA5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C P9215_02091 spoT; guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C P9215_01301 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C P9215_17601 DUF150 K09748 rimP; ribosome maturation factor RimP
C P9215_10741 S4 domain K14761 rlbA; ribosome-associated protein
C P9215_10791 Domain of unknown function DUF143 K09710 ybeB; ribosome-associated protein
C P9215_02001 Predicted metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
C P9215_13421 probable GTP-binding protein K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024