+F Repair protein KO #

  DNA Repair and Recombination Proteins - Prochlorococcus marinus MIT 9215

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D P9215_03101 phr; putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D P9215_03961 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D P9215_15901 DNA photolyase-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E P9215_08971 nth; putative endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D P9215_03101 phr; putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D P9215_03961 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D P9215_15901 DNA photolyase-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D P9215_05041 Uncharacterized deoxyribodipyrimidine photolyase-like protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E P9215_07601 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E P9215_03541 mutM; Formamidopyrimidine-DNA glycolase (FAPY-DNA glycolase) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E P9215_08971 nth; putative endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E P9215_05661 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ D DNA ligase E P9215_15911 Hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E P9215_19841 uvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A E P9215_19221 uvrB; Excinuclease ABC subunit B (UvrB) K03702 uvrB; excinuclease ABC subunit B E P9215_10101 uvrC; Excinuclease ABC subunit C (UvrC) K03703 uvrC; excinuclease ABC subunit C E P9215_03291 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E P9215_15911 Hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F P9215_17541 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F P9215_17531 rpoC1; RNA polymerase gamma subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F P9215_17521 rpoC2; RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F P9215_18071 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F P9215_16981 rpoZ; putative DNA-directed RNA polymerase (omega chain) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F P9215_10621 mfd; Transcriptional-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E P9215_19181 mutS; putative DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E P9215_02371 mutS; putative DNA mismatch repair protein MutS family K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E P9215_09451 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E P9215_00001 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E P9215_19201 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E P9215_01461 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E P9215_07031 dnaQ; possible DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E P9215_19311 dnaX; DNA polymerase, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E P9215_15911 Hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E P9215_03291 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E P9215_18971 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E P9215_04531 vsr; DNA G:T-mismatch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E P9215_12391 recB; possible UvrD/REP helicase subunit B K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E P9215_12411 recC; possible exodeoxyribonuclease V subunit C 125 kD polypeptide K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E P9215_12381 recD; possible exodeoxyribonuclease V 67 kD polypeptide K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E P9215_18341 recA; RecA DNA recombination protein K03553 recA; recombination protein RecA E P9215_09481 ruvA; putative holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E P9215_18891 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E P9215_11891 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E P9215_05791 priA; primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E P9215_18341 recA; RecA DNA recombination protein K03553 recA; recombination protein RecA E P9215_01501 sms; putative DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E P9215_18451 recF; putative DNA repair and genetic recombination protein RecF K03629 recF; DNA replication and repair protein RecF E P9215_08501 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E P9215_04751 recO; possible Recombination protein O (RecO) K03584 recO; DNA repair protein RecO (recombination protein O) E P9215_12331 recR; RecR protein K06187 recR; recombination protein RecR E P9215_19851 recN; DNA repair protein RecN, ABC transporter K03631 recN; DNA repair protein RecN (Recombination protein N) E P9215_09481 ruvA; putative holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E P9215_18891 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E P9215_11891 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F P9215_00041 gyrA; DNA gyrase/topoisomerase IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F P9215_11981 gyrA; DNA gyrase/topoisomerase IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F P9215_19081 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F P9215_05151 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F P9215_15501 himA; Histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F P9215_04751 recO; possible Recombination protein O (RecO) K03584 recO; DNA repair protein RecO (recombination protein O) F P9215_12331 recR; RecR protein K06187 recR; recombination protein RecR F P9215_15911 Hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F P9215_19841 uvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A F P9215_19221 uvrB; Excinuclease ABC subunit B (UvrB) K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D P9215_09531 umuC; putative UmuC protein K03502 umuC; DNA polymerase V D P9215_09541 umuD; putative SOS mutagenesis protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D P9215_18341 recA; RecA DNA recombination protein K03553 recA; recombination protein RecA D P9215_14871 lexA; SOS function regulatory protein, LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D P9215_19851 recN; DNA repair protein RecN, ABC transporter K03631 recN; DNA repair protein RecN (Recombination protein N) D P9215_18971 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D P9215_18361 dinG; Rad3-related DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D P9215_08161 Lhr-like helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024