+F Repair protein KO
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DNA Repair and Recombination Proteins - Prochlorococcus marinus MIT 9215
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D P9215_03101 phr; putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D P9215_03961 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D P9215_15901 DNA photolyase-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E P9215_08971 nth; putative endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D P9215_03101 phr; putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D P9215_03961 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D P9215_15901 DNA photolyase-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D P9215_05041 Uncharacterized deoxyribodipyrimidine photolyase-like protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E P9215_07601 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E P9215_03541 mutM; Formamidopyrimidine-DNA glycolase (FAPY-DNA glycolase) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E P9215_08971 nth; putative endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E P9215_05661 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
E P9215_15911 Hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E P9215_19841 uvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
E P9215_19221 uvrB; Excinuclease ABC subunit B (UvrB) K03702 uvrB; excinuclease ABC subunit B
E P9215_10101 uvrC; Excinuclease ABC subunit C (UvrC) K03703 uvrC; excinuclease ABC subunit C
E P9215_03291 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E P9215_15911 Hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F P9215_17541 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F P9215_17531 rpoC1; RNA polymerase gamma subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F P9215_17521 rpoC2; RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F P9215_18071 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F P9215_16981 rpoZ; putative DNA-directed RNA polymerase (omega chain) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F P9215_10621 mfd; Transcriptional-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E P9215_19181 mutS; putative DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
E P9215_02371 mutS; putative DNA mismatch repair protein MutS family K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
E P9215_09451 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E P9215_00001 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E P9215_19201 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E P9215_01461 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E P9215_07031 dnaQ; possible DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E P9215_19311 dnaX; DNA polymerase, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E P9215_15911 Hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E P9215_03291 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E P9215_18971 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E P9215_04531 vsr; DNA G:T-mismatch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E P9215_12391 recB; possible UvrD/REP helicase subunit B K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E P9215_12411 recC; possible exodeoxyribonuclease V subunit C 125 kD polypeptide K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E P9215_12381 recD; possible exodeoxyribonuclease V 67 kD polypeptide K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E P9215_18341 recA; RecA DNA recombination protein K03553 recA; recombination protein RecA
E P9215_09481 ruvA; putative holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E P9215_18891 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E P9215_11891 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E P9215_05791 priA; primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E P9215_18341 recA; RecA DNA recombination protein K03553 recA; recombination protein RecA
E P9215_01501 sms; putative DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E P9215_18451 recF; putative DNA repair and genetic recombination protein RecF K03629 recF; DNA replication and repair protein RecF
E P9215_08501 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E P9215_04751 recO; possible Recombination protein O (RecO) K03584 recO; DNA repair protein RecO (recombination protein O)
E P9215_12331 recR; RecR protein K06187 recR; recombination protein RecR
E P9215_19851 recN; DNA repair protein RecN, ABC transporter K03631 recN; DNA repair protein RecN (Recombination protein N)
E P9215_09481 ruvA; putative holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E P9215_18891 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E P9215_11891 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F P9215_00041 gyrA; DNA gyrase/topoisomerase IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F P9215_11981 gyrA; DNA gyrase/topoisomerase IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F P9215_19081 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F P9215_05151 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F P9215_15501 himA; Histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F P9215_04751 recO; possible Recombination protein O (RecO) K03584 recO; DNA repair protein RecO (recombination protein O)
F P9215_12331 recR; RecR protein K06187 recR; recombination protein RecR
F P9215_15911 Hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F P9215_19841 uvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
F P9215_19221 uvrB; Excinuclease ABC subunit B (UvrB) K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D P9215_09531 umuC; putative UmuC protein K03502 umuC; DNA polymerase V
D P9215_09541 umuD; putative SOS mutagenesis protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D P9215_18341 recA; RecA DNA recombination protein K03553 recA; recombination protein RecA
D P9215_14871 lexA; SOS function regulatory protein, LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D P9215_19851 recN; DNA repair protein RecN, ABC transporter K03631 recN; DNA repair protein RecN (Recombination protein N)
D P9215_18971 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D P9215_18361 dinG; Rad3-related DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D P9215_08161 Lhr-like helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024