+E Ribosome biogenesis KO
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Ribosome Biogenesis - Prochlorococcus marinus MIT 9312
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D PMT9312_1696 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C PMT9312_1377 GTP-binding protein Era K03595 era; GTPase
C PMT9312_1537 Small GTP-binding protein domain K03595 era; GTPase
C PMT9312_0220 GTP1/OBG family protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C PMT9312_1585 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C PMT9312_0009 antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C PMT9312_0207 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D PMT9312_0866 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PMT9312_0425 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PMT9312_1070 conserved hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PMT9312_0668 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PMT9312_1568 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PMT9312_0173 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PMT9312_1294 Protein of unknown function UPF0011 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PMT9312_1557 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D PMT9312_0851 RNA methyltransferase TrmH, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PMT9312_0864 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D PMT9312_0054 putative RNA methylase family UPF0020 K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D PMT9312_1574 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PMT9312_1557 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D PMT9312_0195 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PMT9312_1204 ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C PMT9312_1100 [SSU ribosomal protein S18P]-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C PMT9312_0338 GCN5-related N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C PMT9312_1698 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C PMT9312_0106 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C PMT9312_1451 [LSU ribosomal protein L11P]-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C PMT9312_1696 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C PMT9312_1593 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
C PMT9312_0799 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C PMT9312_0850 conserved hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C PMT9312_1112 ATP-dependent RNA helicase CsdA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C PMT9312_1377 GTP-binding protein Era K03595 era; GTPase
C PMT9312_1537 Small GTP-binding protein domain K03595 era; GTPase
C PMT9312_0019 GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C PMT9312_0387 Small GTP-binding protein domain K03977 engA; GTPase
C PMT9312_0220 GTP1/OBG family protein K03979 obgE; GTPase [EC:3.6.5.-]
C PMT9312_0196 Ras superfamily GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A
B Other maturation factors
C PMT9312_0325 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C PMT9312_0193 metal dependent phosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C PMT9312_0115 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C PMT9312_1584 Protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
C PMT9312_0972 RNA-binding S4 K14761 rlbA; ribosome-associated protein
C PMT9312_0977 Iojap-related protein K09710 ybeB; ribosome-associated protein
C PMT9312_0184 Protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
C PMT9312_1234 conserved hypothetical protein K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024