+D GENES KO #

  KEGG Orthology (KO) - Pseudomonas mendocina ymp

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:pmy00010] D Pmen_1147 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Pmen_3594 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Pmen_0508 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Pmen_0462 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Pmen_3612 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Pmen_1594 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pmen_1311 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pmen_1451 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pmen_0460 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Pmen_4246 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Pmen_3033 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Pmen_3261 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Pmen_2773 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Pmen_2085 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Pmen_0576 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Pmen_0575 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Pmen_1104 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2501 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_3028 Alcohol dehydrogenase GroES domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Pmen_0120 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pmen_3746 Alcohol dehydrogenase GroES domain protein K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183] D Pmen_1957 Pyrrolo-quinoline quinone K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D Pmen_1963 Pyrrolo-quinoline quinone K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D Pmen_0440 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pmen_1964 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D Pmen_3109 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pmen_3595 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pmen_3306 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Pmen_4379 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pmen_0088 Aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] D Pmen_0368 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00020 Citrate cycle (TCA cycle) [PATH:pmy00020] D Pmen_2508 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Pmen_1903 aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Pmen_2578 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pmen_2397 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Pmen_2396 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Pmen_2503 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Pmen_2502 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Pmen_1104 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2501 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2499 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Pmen_2500 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Pmen_2505 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Pmen_2504 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pmen_2507 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pmen_2506 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Pmen_3265 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Pmen_1689 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Pmen_3677 malate--quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D Pmen_3093 malate--quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D Pmen_4479 acetyl-CoA carboxylase, biotin carboxylase K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1] D Pmen_4478 oxaloacetate decarboxylase alpha subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D Pmen_0368 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Pmen_0576 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Pmen_0575 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:pmy00030] D Pmen_3594 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Pmen_3143 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Pmen_4486 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Pmen_3142 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D Pmen_3999 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Pmen_0458 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Pmen_1931 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Pmen_4223 ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D Pmen_4379 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pmen_2879 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D Pmen_1055 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Pmen_1312 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D Pmen_3141 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Pmen_0791 quinoprotein glucose dehydrogenase K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2] D Pmen_2569 carbohydrate kinase, thermoresistant glucokinase family K00851 idnK; gluconokinase [EC:2.7.1.12] D Pmen_2772 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Pmen_0978 thioredoxin reductase K22345 E4.3.1.9; glucosaminate ammonia-lyase [EC:4.3.1.9] D Pmen_0462 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Pmen_0508 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] C 00040 Pentose and glucuronate interconversions [PATH:pmy00040] D Pmen_2354 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Pmen_2353 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pmen_2307 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pmen_3999 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Pmen_4473 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D Pmen_0227 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] C 00051 Fructose and mannose metabolism [PATH:pmy00051] D Pmen_4474 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Pmen_1020 mannose-6-phosphate isomerase, type 2 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pmen_1677 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pmen_4287 mannose-6-phosphate isomerase, type 2 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pmen_4379 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pmen_0508 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Pmen_0787 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D Pmen_4472 Fructuronate reductase K00045 E1.1.1.67; mannitol 2-dehydrogenase [EC:1.1.1.67] D Pmen_1031 GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] D Pmen_1678 GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] D Pmen_1030 hypothetical protein K19290 alg8; mannuronan synthase [EC:2.4.1.33] D Pmen_1676 hypothetical protein K19290 alg8; mannuronan synthase [EC:2.4.1.33] D Pmen_1029 type IV pilus assembly PilZ K19291 alg44; mannuronan synthase [EC:2.4.1.33] D Pmen_1675 type IV pilus assembly PilZ K19291 alg44; mannuronan synthase [EC:2.4.1.33] D Pmen_1026 Carbohydrate-binding and sugar hydrolysis K01795 algG; mannuronan 5-epimerase [EC:5.1.3.37] D Pmen_1667 hypothetical protein K01795 algG; mannuronan 5-epimerase [EC:5.1.3.37] D Pmen_1024 Poly(beta-D-mannuronate) lyase K01729 algL; poly(beta-D-mannuronate) lyase [EC:4.2.2.3] D Pmen_1668 Alginate lyase K01729 algL; poly(beta-D-mannuronate) lyase [EC:4.2.2.3] D Pmen_0462 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Pmen_3612 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Pmen_0788 PTS system D-fructose-specific IIC component (F1P-forming), Frc family / PTS system D-fructose-specific IIB component (F1P-forming), Frc family K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] C 00052 Galactose metabolism [PATH:pmy00052] D Pmen_3306 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Pmen_3874 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pmen_2339 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pmen_0076 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pmen_2353 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pmen_2307 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pmen_4379 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pmen_1147 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Pmen_2341 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D Pmen_3128 alpha amylase, catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:pmy00053] D Pmen_2354 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Pmen_0440 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pmen_1214 D-glucarate dehydratase K01706 gudD; glucarate dehydratase [EC:4.2.1.40] D Pmen_1216 D-glucarate dehydratase K01706 gudD; glucarate dehydratase [EC:4.2.1.40] D Pmen_0227 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Pmen_1215 dihydrodipicolinate synthetase K01707 kdgD; 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41] D Pmen_1218 galactarate dehydratase K01708 garD; galactarate dehydratase [EC:4.2.1.42] D Pmen_3299 NAD-dependent epimerase/dehydratase K18981 udh; uronate dehydrogenase [EC:1.1.1.203] C 00500 Starch and sucrose metabolism [PATH:pmy00500] D Pmen_3128 alpha amylase, catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Pmen_2353 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pmen_2307 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pmen_3237 glycoside hydrolase, family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Pmen_2277 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21] D Pmen_2293 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Pmen_2288 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D Pmen_4105 alpha-1,6-glucosidase, pullulanase-type K01200 pulA; pullulanase [EC:3.2.1.41] D Pmen_3133 alpha amylase, catalytic region K01176 AMY; alpha-amylase [EC:3.2.1.1] D Pmen_2294 trehalose synthase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1] D Pmen_2279 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D Pmen_2295 alpha amylase, catalytic region K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16] D Pmen_2282 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D Pmen_2280 maltooligosyl trehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15] D Pmen_2278 maltooligosyl trehalose hydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141] D Pmen_4379 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pmen_1147 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Pmen_3594 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Pmen_4474 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pmy00520] D Pmen_1590 glycoside hydrolase, family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Pmen_4474 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Pmen_4602 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Pmen_3613 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D Pmen_4605 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Pmen_3929 protein of unknown function UPF0075 K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D Pmen_1844 phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D Pmen_4009 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D Pmen_4008 Nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D Pmen_0882 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Pmen_1618 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Pmen_1709 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Pmen_1873 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Pmen_1857 UDP-glucose/GDP-mannose dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136] D Pmen_1858 oxidoreductase domain protein K13016 wbpB; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] D Pmen_1860 DegT/DnrJ/EryC1/StrS aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] D Pmen_1859 Serine acetyltransferase-like protein K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201] D Pmen_1872 polysaccharide biosynthesis protein CapD K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D Pmen_1147 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Pmen_4379 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pmen_2353 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pmen_2307 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pmen_2354 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Pmen_3874 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pmen_2339 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pmen_0076 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pmen_2341 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D Pmen_3594 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Pmen_1020 mannose-6-phosphate isomerase, type 2 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pmen_1677 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pmen_4287 mannose-6-phosphate isomerase, type 2 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pmen_1031 GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] D Pmen_1678 GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] D Pmen_0311 oxidoreductase FAD/NAD(P)-binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] C 00620 Pyruvate metabolism [PATH:pmy00620] D Pmen_3109 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pmen_3595 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pmen_0576 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Pmen_0575 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Pmen_1104 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2501 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_0120 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pmen_3028 Alcohol dehydrogenase GroES domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Pmen_3746 Alcohol dehydrogenase GroES domain protein K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183] D Pmen_1957 Pyrrolo-quinoline quinone K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D Pmen_1963 Pyrrolo-quinoline quinone K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D Pmen_3644 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Pmen_3645 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pmen_3261 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Pmen_2773 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Pmen_3037 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Pmen_0714 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Pmen_0713 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Pmen_2715 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Pmen_0440 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pmen_1964 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D Pmen_4049 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D Pmen_3635 FMN-dependent alpha-hydroxy acid dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D Pmen_2355 thiamine pyrophosphate enzyme TPP binding domain protein K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D Pmen_1729 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D Pmen_3636 D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12] D Pmen_1395 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Pmen_4207 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Pmen_2064 Hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Pmen_3651 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Pmen_0540 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Pmen_2893 oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Pmen_2892 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Pmen_2894 sodium pump decarboxylase, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D Pmen_0689 2,3-dimethylmalate lyase K01003 bcpA; oxaloacetate decarboxylase [EC:4.1.1.112] D Pmen_4479 acetyl-CoA carboxylase, biotin carboxylase K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1] D Pmen_4478 oxaloacetate decarboxylase alpha subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D Pmen_3677 malate--quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D Pmen_3093 malate--quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D Pmen_3265 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Pmen_1689 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Pmen_3360 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Pmen_0368 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Pmen_2085 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Pmen_4096 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D Pmen_0199 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D Pmen_3662 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3820 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3597 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1138 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2591 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2036 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1725 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_0745 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3492 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Pmen_0989 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pmy00630] D Pmen_2407 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D Pmen_3109 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pmen_3595 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pmen_4096 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D Pmen_0199 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D Pmen_2508 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Pmen_1903 aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Pmen_2578 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pmen_3662 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3820 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3597 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1138 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2591 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2036 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1725 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_0745 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1493 MaoC domain protein dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D Pmen_0203 glycolate oxidase, subunit GlcD K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D Pmen_0202 FAD linked oxidase domain protein K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D Pmen_0201 protein of unknown function DUF224, cysteine-rich region domain protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D Pmen_2273 Catalase K03781 katE; catalase [EC:1.11.1.6] D Pmen_3664 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Pmen_3998 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Pmen_1621 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Pmen_4457 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Pmen_4140 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0341 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_2858 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0342 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0676 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_3468 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_2634 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_4366 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_4525 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_1344 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pmen_4132 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pmen_0759 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pmen_1345 glycine dehydrogenase (decarboxylating) alpha subunit K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Pmen_0331 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_1343 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_3460 glycine cleavage T protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_3456 glycine cleavage T protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_1104 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2501 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_1346 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Pmen_0332 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Pmen_2769 glyoxylate carboligase K01608 gcl; tartronate-semialdehyde synthase [EC:4.1.1.47] D Pmen_3195 Hydroxypyruvate isomerase K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22] D Pmen_2770 Hydroxypyruvate isomerase K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22] D Pmen_2771 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D Pmen_1439 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Pmen_2772 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Pmen_3141 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Pmen_0390 formate dehydrogenase delta subunit K00126 fdsD; formate dehydrogenase subunit delta [EC:1.17.1.9] D Pmen_0389 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Pmen_0388 formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Pmen_0387 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Pmen_3312 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Pmen_4127 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Pmen_3457 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Pmen_3470 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:pmy00640] D Pmen_3109 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pmen_3595 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pmen_4049 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D Pmen_3644 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Pmen_3645 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pmen_3247 Pyruvate dehydrogenase (acetyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Pmen_3246 Transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Pmen_3245 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Pmen_1104 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2501 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2037 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Pmen_2529 Alcohol dehydrogenase GroES domain protein K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D Pmen_1580 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Pmen_2590 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pmen_3037 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Pmen_0714 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Pmen_0713 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Pmen_2715 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Pmen_3695 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Pmen_2500 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Pmen_2499 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Pmen_1377 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_4593 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_3694 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_0414 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_2081 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D Pmen_2082 2-methylcitrate dehydratase (trans-methylaconitate-forming) K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117] D Pmen_2083 2-methylaconitate cis-trans isomerase K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-] D Pmen_2578 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pmen_2080 methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] D Pmen_1310 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] D Pmen_3065 iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-] C 00650 Butanoate metabolism [PATH:pmy00650] D Pmen_3662 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3820 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3597 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1138 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2591 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2036 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1725 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_0745 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1580 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Pmen_2590 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pmen_2037 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Pmen_1493 MaoC domain protein dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D Pmen_0528 poly(R)-hydroxyalkanoic acid synthase, class II K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D Pmen_0530 poly(R)-hydroxyalkanoic acid synthase, class II K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D Pmen_2892 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Pmen_2505 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Pmen_2504 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pmen_2507 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pmen_2506 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Pmen_0232 4-aminobutyrate aminotransferase apoenzyme K14268 davT; 5-aminovalerate/4-aminobutyrate aminotransferase [EC:2.6.1.48 2.6.1.19] D Pmen_3441 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pmen_0231 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pmen_2029 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Pmen_1140 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Pmen_1139 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Pmen_2028 acetoacetyl-CoA synthase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D Pmen_4355 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D Pmen_1006 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pmen_1795 thiamine pyrophosphate enzyme TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pmen_1007 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:pmy00660] D Pmen_1006 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pmen_1795 thiamine pyrophosphate enzyme TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pmen_1007 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Pmen_2500 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Pmen_2499 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Pmen_2723 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Pmen_2722 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Pmen_2721 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:pmy00562] D Pmen_3515 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Pmen_4063 3-phytase K01083 E3.1.3.8; 3-phytase [EC:3.1.3.8] D Pmen_1377 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_4593 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_3694 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_0414 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_3612 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:pmy00190] D Pmen_2412 NADH dehydrogenase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D Pmen_2413 NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D Pmen_2414 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2] D Pmen_2415 NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D Pmen_2416 NADH dehydrogenase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D Pmen_2417 NADH dehydrogenase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D Pmen_2418 NADH dehydrogenase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D Pmen_2419 NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D Pmen_2420 NADH dehydrogenase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D Pmen_2421 NADH dehydrogenase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D Pmen_2422 NADH dehydrogenase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D Pmen_2423 NADH dehydrogenase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D Pmen_2424 NADH dehydrogenase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D Pmen_2188 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Pmen_0765 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Pmen_2505 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Pmen_2504 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pmen_2507 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pmen_2506 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Pmen_0903 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Pmen_0904 Cytochrome b/b6, N-terminal domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Pmen_0905 Cytochrome c1-like protein K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Pmen_0150 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Pmen_0145 cytochrome c oxidase, subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D Pmen_0143 Cytochrome-c oxidase K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D Pmen_2267 Cytochrome-c oxidase K15408 coxAC; cytochrome c oxidase subunit I+III [EC:7.1.1.9] D Pmen_0142 cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D Pmen_2266 cytochrome c, monohem K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D Pmen_0144 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D Pmen_0149 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Pmen_2599 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Pmen_2604 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Pmen_2605 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Pmen_2600 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Pmen_2606 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D Pmen_2601 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D Pmen_2607 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Pmen_2602 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Pmen_0746 cytochrome bd quinol oxidase subunit 1 apoprotein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Pmen_0747 cytochrome bd quinol oxidase subunit 2 apoprotein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Pmen_2197 cytochrome c, class I K08738 CYC; cytochrome c D Pmen_4609 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Pmen_4607 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Pmen_4608 ATP synthase F1 subcomplex gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Pmen_4610 ATP synthase F1 subcomplex delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Pmen_4606 ATP synthase F1 subcomplex epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Pmen_4613 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Pmen_4611 ATP synthase F0 subcomplex B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Pmen_4612 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Pmen_3829 Inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D Pmen_0300 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Pmen_4078 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:pmy00680] D Pmen_4126 glutathione-independent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D Pmen_3028 Alcohol dehydrogenase GroES domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Pmen_3027 Carboxylesterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D Pmen_0389 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Pmen_0388 formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Pmen_0387 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Pmen_0390 formate dehydrogenase delta subunit K00126 fdsD; formate dehydrogenase subunit delta [EC:1.17.1.9] D Pmen_1344 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pmen_4132 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pmen_0759 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pmen_3664 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Pmen_2772 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Pmen_3033 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Pmen_3360 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Pmen_0462 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Pmen_0508 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Pmen_3459 Flavin-containing monooxygenase K18277 tmm; trimethylamine monooxygenase [EC:1.14.13.148] D Pmen_3467 glutamate synthase (NADPH) GltB1 subunit K22081 mgsA; methylamine---glutamate N-methyltransferase subunit A [EC:2.1.1.21] D Pmen_3466 glutamate synthase (NADPH) GltB3 subunit K22082 mgsB; methylamine---glutamate N-methyltransferase subunit B [EC:2.1.1.21] D Pmen_3465 glutamate synthase (NADPH) GltB2 subunit K22083 mgsC; methylamine---glutamate N-methyltransferase subunit C [EC:2.1.1.21] D Pmen_3644 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Pmen_3645 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pmen_3109 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pmen_3595 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pmen_2085 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Pmen_4246 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Pmen_4232 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pmen_1849 phosphoserine aminotransferase apoenzyme K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Pmen_0618 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Pmen_2544 phosphoserine phosphatase / homoserine kinase / phosphoserine:homoserine phosphotransferase K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39] C 00910 Nitrogen metabolism [PATH:pmy00910] D Pmen_2098 nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Pmen_2105 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D Pmen_2104 nitrate ABC transporter, inner membrane subunit K15577 nrtB; nitrate/nitrite transport system permease protein D Pmen_2103 nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D Pmen_2981 periplasmic nitrate reductase subunit NapA apoprotein K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D Pmen_2982 periplasmic nitrate reductase subunit NapB K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D Pmen_2094 assimilatory nitrate reductase (NADH) alpha subunit apoprotein K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-] D Pmen_2096 assimilatory nitrite reductase (NAD(P)H) large subunit precursor K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4] D Pmen_2095 assimilatory nitrite reductase (NAD(P)H) small subunit K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4] D Pmen_3935 2-nitropropane dioxygenase, NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D Pmen_0562 2-nitropropane dioxygenase, NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D Pmen_2928 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Pmen_1771 glutamate dehydrogenase (NADP) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Pmen_4140 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0341 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_2858 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0342 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0676 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_3468 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_2634 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_4366 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_4525 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0550 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Pmen_0551 glutamate synthase (NADPH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Pmen_1106 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D Pmen_4475 Carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D Pmen_3753 Carbonate dehydratase K01674 cah; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:pmy00920] D Pmen_4318 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D Pmen_4345 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D Pmen_4317 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Pmen_4346 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Pmen_4316 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Pmen_4347 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Pmen_4348 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Pmen_4331 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pmen_4323 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pmen_4333 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pmen_4321 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pmen_4330 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pmen_4320 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pmen_4329 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pmen_4322 Alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D Pmen_4324 FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D Pmen_0891 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D Pmen_0890 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Pmen_1862 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D Pmen_0394 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Pmen_2545 phosphoadenylylsulfate reductase (thioredoxin) K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Pmen_1960 hypothetical protein K17226 soxY; sulfur-oxidizing protein SoxY D Pmen_0793 flavodoxin/nitric oxide synthase K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D Pmen_2147 Sulfite reductase (ferredoxin) K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D Pmen_1769 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Pmen_0622 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Pmen_4335 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Pmen_4016 thiosulfate sulfurtransferase K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1] D Pmen_2246 Rhodanese domain protein K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1] D Pmen_3513 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Pmen_1790 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D Pmen_4155 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D Pmen_2710 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D Pmen_0437 AMP-dependent synthetase and ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D Pmen_3817 AMP-dependent synthetase and ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D Pmen_0380 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D Pmen_4079 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D Pmen_3819 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D Pmen_4081 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:pmy00061] D Pmen_3037 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Pmen_0714 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Pmen_0713 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Pmen_2715 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Pmen_1629 acyl carrier protein K02078 acpP; acyl carrier protein D Pmen_1627 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Pmen_0395 beta-ketoacyl synthase K18473 fabY; acetoacetyl-[acyl-carrier protein] synthase [EC:2.3.1.180] D Pmen_2470 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Pmen_2335 3-oxoacyl-(acyl-carrier-protein) synthase-like protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Pmen_1630 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Pmen_3684 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_1628 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_0744 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_1509 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_2469 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D Pmen_3042 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Pmen_2056 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Pmen_2970 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_1495 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_1496 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_2464 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:pmy00071] D Pmen_3662 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3820 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3597 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1138 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2591 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2036 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1725 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_0745 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1581 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Pmen_3228 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Pmen_1580 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Pmen_2590 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pmen_2037 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Pmen_2439 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Pmen_0599 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Pmen_2640 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Pmen_2971 acyl-CoA dehydrogenase domain protein K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D Pmen_0898 acyl-CoA dehydrogenase domain protein K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D Pmen_1917 acyl-CoA dehydrogenase domain protein K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D Pmen_4429 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Pmen_2970 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_1495 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_1496 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_2464 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_2750 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D Pmen_0443 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D Pmen_4402 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K05297 rubB; rubredoxin---NAD+ reductase [EC:1.18.1.1] D Pmen_0430 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K21738 alkT; rubredoxin---NAD+ reductase [EC:1.18.1.1] D Pmen_3028 Alcohol dehydrogenase GroES domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Pmen_0120 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pmen_0440 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:pmy00561] D Pmen_1439 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Pmen_2772 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Pmen_0440 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pmen_3345 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Pmen_3091 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Pmen_1626 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Pmen_4024 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Pmen_2584 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Pmen_0011 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Pmen_1770 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Pmen_2480 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Pmen_2564 Triacylglycerol lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D Pmen_1763 acetyltransferase and hydrolase with the alpha/beta hydrolase fold-like protein K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D Pmen_0272 lipase, class 3 K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D Pmen_1822 glycosyl transferase, group 1 K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-] C 00564 Glycerophospholipid metabolism [PATH:pmy00564] D Pmen_2467 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Pmen_3348 homodimeric glycerol 3-phosphate dehydrogenase (quinone) K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Pmen_1559 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Pmen_3091 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Pmen_4024 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Pmen_2584 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Pmen_0011 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Pmen_1770 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Pmen_2480 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Pmen_0662 Glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Pmen_1604 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Pmen_4210 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Pmen_2682 Ethanolamine ammonia lyase large subunit K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7] D Pmen_2683 Ethanolamine ammonia-lyase light chain K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7] D Pmen_3048 Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Pmen_0005 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Pmen_3554 CDP-diacylglycerol-choline O-phosphatidyltransferase K01004 pcs; phosphatidylcholine synthase [EC:2.7.8.24] D Pmen_1010 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Pmen_0621 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D Pmen_2373 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D Pmen_0010 CDP-alcohol phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D Pmen_3851 phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D Pmen_4553 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D Pmen_2285 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D Pmen_1132 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D Pmen_2055 phospholipase D/Transphosphatidylase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] C 00565 Ether lipid metabolism [PATH:pmy00565] D Pmen_1558 FAD linked oxidase domain protein K00803 AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26] D Pmen_1483 YhhN family protein K18575 TMEM86B; alkenylglycerophosphocholine hydrolase [EC:3.3.2.2] C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:pmy00592] D Pmen_1581 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Pmen_3228 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:pmy01040] D Pmen_4308 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D Pmen_0669 fatty acid desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-] D Pmen_0668 ferredoxin K22770 K22770; stearoyl-CoA 9-desaturase NADPH oxidoreductase D Pmen_2558 Lysophospholipase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Pmen_3719 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D Pmen_0082 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:pmy00230] D Pmen_0608 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Pmen_0393 NUDIX hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D Pmen_4379 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pmen_1055 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Pmen_2711 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Pmen_0707 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Pmen_2997 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Pmen_3406 formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D Pmen_3414 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D Pmen_2996 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Pmen_0118 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D Pmen_0119 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Pmen_1665 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Pmen_2402 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Pmen_0708 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Pmen_2616 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Pmen_2548 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Pmen_1038 metallophosphoesterase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Pmen_3024 3'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Pmen_0392 HAD-superfamily hydrolase, subfamily IA, variant 3 K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-] D Pmen_2513 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D Pmen_0970 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Pmen_0947 phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D Pmen_3486 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Pmen_3504 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Pmen_4158 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Pmen_0251 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D Pmen_2751 molybdopterin dehydrogenase, FAD-binding protein K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4] D Pmen_2752 Xanthine oxidase K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D Pmen_2345 xanthine dehydrogenase, molybdenum binding subunit apoprotein K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] D Pmen_2346 molybdopterin dehydrogenase, FAD-binding protein K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4] D Pmen_2347 (2Fe-2S)-binding domain protein K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit D Pmen_3485 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Pmen_2011 glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Pmen_2754 amidohydrolase K01487 guaD; guanine deaminase [EC:3.5.4.3] D Pmen_4388 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Pmen_3151 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pmen_3152 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Pmen_3004 putative deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D Pmen_3991 hypothetical protein K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89] D Pmen_4390 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Pmen_0301 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Pmen_1735 (p)ppGpp synthetase I, SpoT/RelA K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D Pmen_1823 putative adenylate/guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D Pmen_0273 adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1] D Pmen_0641 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Pmen_3750 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D Pmen_0422 conserved hypothetical protein 730 K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D Pmen_3706 adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2] D Pmen_3359 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Pmen_1736 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Pmen_0606 Calcineurin phosphoesterase C-terminal domain protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D Pmen_4015 bis(5'nucleosyl)-tetraphosphatase, ApaH K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D Pmen_0891 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D Pmen_1862 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D Pmen_0890 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Pmen_2757 Transthyretin K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D Pmen_2759 conserved hypothetical protein K13485 PRHOXNB; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97] D Pmen_2758 Chitin deacetylase K16842 hpxB; allantoinase [EC:3.5.2.5] D Pmen_1325 protein of unknown function DUF861, cupin_3 K14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26] D Pmen_2760 Ureidoglycolate hydrolase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3] D Pmen_0302 Ureidoglycolate hydrolase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3] D Pmen_0692 urease, Metallo peptidase, MEROPS family M38 K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Pmen_0693 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D Pmen_0695 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D Pmen_3832 Gamma-glutamyltransferase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126] D Pmen_1106 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:pmy00240] D Pmen_3620 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Pmen_3621 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Pmen_0397 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Pmen_1392 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Pmen_4541 Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Pmen_0396 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Pmen_3011 dihydroorotate oxidase A K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D Pmen_4383 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Pmen_2681 orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Pmen_3051 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Pmen_3504 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Pmen_1736 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Pmen_0859 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Pmen_0466 protein of unknown function DUF45 K07043 upp; UTP pyrophosphatase [EC:3.6.1.-] D Pmen_3035 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Pmen_1853 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Pmen_2548 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Pmen_1038 metallophosphoesterase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Pmen_3024 3'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Pmen_2513 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D Pmen_0946 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D Pmen_0398 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Pmen_0422 conserved hypothetical protein 730 K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D Pmen_3834 Amidohydrolase 3 K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D Pmen_1408 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D Pmen_3151 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pmen_3152 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Pmen_3991 hypothetical protein K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89] D Pmen_1633 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Pmen_4378 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Pmen_4213 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:pmy00250] D Pmen_3114 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pmen_1466 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Pmen_0136 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Pmen_2955 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Pmen_3494 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K13566 NIT2; omega-amidase [EC:3.5.1.3] D Pmen_2522 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Pmen_0473 L-alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Pmen_0128 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D Pmen_1394 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Pmen_0277 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Pmen_0641 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Pmen_2402 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Pmen_0397 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Pmen_0232 4-aminobutyrate aminotransferase apoenzyme K14268 davT; 5-aminovalerate/4-aminobutyrate aminotransferase [EC:2.6.1.48 2.6.1.19] D Pmen_3441 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pmen_0231 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pmen_0550 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Pmen_0551 glutamate synthase (NADPH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Pmen_2928 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Pmen_1771 glutamate dehydrogenase (NADP) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Pmen_1110 L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Pmen_4140 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0341 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_2858 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0342 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0676 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_3468 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_2634 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_4366 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_4525 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_3620 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Pmen_3621 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Pmen_0139 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Pmen_4602 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Pmen_2711 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:pmy00260] D Pmen_2902 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Pmen_2720 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Pmen_3394 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Pmen_2012 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Pmen_0152 homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39] D Pmen_2544 phosphoserine phosphatase / homoserine kinase / phosphoserine:homoserine phosphotransferase K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39] D Pmen_3393 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Pmen_2904 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Pmen_4134 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Pmen_1344 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pmen_4132 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pmen_0759 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pmen_3664 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Pmen_1439 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Pmen_2772 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Pmen_4246 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Pmen_4232 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pmen_1849 phosphoserine aminotransferase apoenzyme K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Pmen_0618 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Pmen_1345 glycine dehydrogenase (decarboxylating) alpha subunit K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Pmen_0331 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_1343 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_3460 glycine cleavage T protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_3456 glycine cleavage T protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_1104 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2501 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_1346 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Pmen_0332 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Pmen_1010 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Pmen_0481 choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1] D Pmen_0482 betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D Pmen_4137 Rieske (2Fe-2S) domain protein K00479 gbcA; glycine betaine monooxygenase A [EC:1.14.13.251] D Pmen_4136 Oxidoreductase FAD-binding domain protein K21832 gbcB; glycine betaine monooxygenase B [EC:1.14.13.251] D Pmen_0495 NADH:flavin oxidoreductase/NADH oxidase K21833 dgcA; N,N-dimethylglycine/sarcosine dehydrogenase [EC:1.5.7.3] D Pmen_0494 protein of unknown function DUF224, cysteine-rich region domain protein K21834 dgcB; N,N-dimethylglycine/sarcosine dehydrogenase ferredoxin subunit D Pmen_0493 electron transfer flavoprotein, alpha subunit K25960 etfA; N,N-dimethylglycine/sarcosine catabolism electron transfer flavoprotein subunit alpha D Pmen_0492 electron transfer flavoprotein beta-subunit K25961 etfB; N,N-dimethylglycine/sarcosine catabolism electron transfer flavoprotein subunit beta D Pmen_3474 aminomethyltransferase K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1] D Pmen_4129 sarcosine oxidase, alpha subunit family K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1] D Pmen_4131 sarcosine oxidase, beta subunit family K00303 soxB; sarcosine oxidase, subunit beta [EC:1.5.3.24 1.5.3.1] D Pmen_3472 FAD dependent oxidoreductase K00303 soxB; sarcosine oxidase, subunit beta [EC:1.5.3.24 1.5.3.1] D Pmen_3475 hypothetical protein K00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1] D Pmen_4128 sarcosine oxidase, gamma subunit family K00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1] D Pmen_3473 Sarcosine oxidase, delta subunit, heterotetrameric K00304 soxD; sarcosine oxidase, subunit delta [EC:1.5.3.24 1.5.3.1] D Pmen_4130 sarcosine oxidase, delta subunit family K00304 soxD; sarcosine oxidase, subunit delta [EC:1.5.3.24 1.5.3.1] D Pmen_4547 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Pmen_4221 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Pmen_3749 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Pmen_3266 D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D Pmen_0070 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Pmen_0071 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Pmen_2868 diaminobutyrate aminotransferase apoenzyme K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] C 00270 Cysteine and methionine metabolism [PATH:pmy00270] D Pmen_3513 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Pmen_1790 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D Pmen_2159 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Pmen_1683 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Pmen_0454 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Pmen_0970 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Pmen_1846 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D Pmen_1591 methylthioadenosine phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44] D Pmen_1847 methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D Pmen_1884 acireductone dioxygenase apoprotein K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] D Pmen_2738 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Pmen_1913 putative GAF sensor protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D Pmen_4036 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pmen_0449 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Pmen_2947 1-aminocyclopropane-1-carboxylate deaminase-like protein K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D Pmen_2902 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Pmen_2720 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Pmen_3394 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Pmen_2012 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Pmen_4155 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D Pmen_2710 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D Pmen_0578 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pmen_0356 glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Pmen_0402 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Pmen_3114 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pmen_1769 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Pmen_0622 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Pmen_4335 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Pmen_2010 D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D Pmen_4547 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Pmen_1733 cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D Pmen_4232 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pmen_1849 phosphoserine aminotransferase apoenzyme K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:pmy00280] D Pmen_0578 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pmen_3248 Glu/Leu/Phe/Val dehydrogenase, dimerization region K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D Pmen_2875 Glu/Leu/Phe/Val dehydrogenase, dimerization region K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D Pmen_3247 Pyruvate dehydrogenase (acetyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Pmen_3246 Transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Pmen_3245 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Pmen_1104 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2501 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2037 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Pmen_2439 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Pmen_0599 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Pmen_2640 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Pmen_2033 isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D Pmen_1580 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Pmen_2590 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pmen_1581 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Pmen_3228 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Pmen_1377 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_4593 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_3694 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_0414 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_0440 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pmen_3695 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Pmen_2030 3-methylcrotonoyl-CoA carboxylase, alpha subunit K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D Pmen_2032 Propionyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D Pmen_2031 Enoyl-CoA hydratase/isomerase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D Pmen_2029 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Pmen_1140 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Pmen_1139 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Pmen_2028 acetoacetyl-CoA synthase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D Pmen_3662 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3820 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3597 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1138 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2591 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2036 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1725 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_0745 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pmy00290] D Pmen_4221 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Pmen_3749 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Pmen_2723 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Pmen_2722 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Pmen_2721 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Pmen_1006 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pmen_1795 thiamine pyrophosphate enzyme TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pmen_1007 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Pmen_1009 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Pmen_4205 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Pmen_0578 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pmen_3248 Glu/Leu/Phe/Val dehydrogenase, dimerization region K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D Pmen_2875 Glu/Leu/Phe/Val dehydrogenase, dimerization region K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D Pmen_2522 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Pmen_3492 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Pmen_0989 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:pmy00300] D Pmen_3394 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Pmen_2012 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Pmen_2902 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Pmen_2720 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Pmen_1663 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Pmen_3622 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Pmen_3059 Tetrahydrodipicolinate N-succinyltransferase-like protein K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D Pmen_3056 aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D Pmen_3066 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Pmen_0266 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Pmen_0267 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Pmen_2671 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D Pmen_0917 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Pmen_0918 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:pmy00310] D Pmen_2502 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Pmen_1104 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2501 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_4429 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Pmen_1580 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Pmen_2590 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pmen_3662 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3820 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3597 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1138 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2591 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2036 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1725 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_0745 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_0232 4-aminobutyrate aminotransferase apoenzyme K14268 davT; 5-aminovalerate/4-aminobutyrate aminotransferase [EC:2.6.1.48 2.6.1.19] D Pmen_3441 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pmen_0231 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pmen_4428 L-carnitine dehydratase/bile acid-inducible protein F K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-] D Pmen_0440 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pmen_0503 gamma-butyrobetaine hydroxylase K00471 BBOX1; gamma-butyrobetaine dioxygenase [EC:1.14.11.1] C 00220 Arginine biosynthesis [PATH:pmy00220] D Pmen_3342 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Pmen_1107 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Pmen_1394 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Pmen_0277 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Pmen_0703 urea amidolyase related protein K01941 uca; urea carboxylase [EC:6.3.4.6] D Pmen_1358 biotin carboxylation domain protein K01941 uca; urea carboxylase [EC:6.3.4.6] D Pmen_0704 Amidase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D Pmen_0692 urease, Metallo peptidase, MEROPS family M38 K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Pmen_0693 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D Pmen_0695 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D Pmen_1108 arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D Pmen_0139 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Pmen_4140 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0341 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_2858 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0342 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0676 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_3468 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_2634 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_4366 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_4525 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_3620 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Pmen_3621 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Pmen_1106 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D Pmen_2928 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Pmen_1771 glutamate dehydrogenase (NADP) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Pmen_3114 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pmen_2522 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Pmen_0354 N-acetylglutamate synthase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D Pmen_0932 glutamate N-acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D Pmen_4380 N-acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Pmen_3933 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Pmen_0353 acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:pmy00330] D Pmen_3834 Amidohydrolase 3 K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D Pmen_2068 Lysine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D Pmen_0727 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Pmen_4051 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D Pmen_0337 agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12] D Pmen_0338 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D Pmen_0801 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Pmen_0987 carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96] D Pmen_0343 aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113] D Pmen_2633 aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113] D Pmen_0440 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pmen_0237 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K12254 kauB; 4-guanidinobutyraldehyde dehydrogenase / NAD-dependent aldehyde dehydrogenase [EC:1.2.1.54 1.2.1.-] D Pmen_1797 putative agmatinase K12255 gbuA; guanidinobutyrase [EC:3.5.3.7] D Pmen_1657 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Pmen_2909 arginine succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D Pmen_2910 arginine succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D Pmen_2907 succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23] D Pmen_2911 succinylornithine aminotransferase apoenzyme / acetylornithine aminotransferase apoenzyme K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D Pmen_2908 succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] D Pmen_2905 succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96] D Pmen_1975 gamma-glutamylputrescine oxidase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Pmen_4365 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Pmen_0242 gamma-glutamylputrescine oxidase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Pmen_2636 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Pmen_4151 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Pmen_1110 L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Pmen_3679 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Pmen_3802 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Pmen_0513 prolyl aminopeptidase, Serine peptidase, MEROPS family S33 K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Pmen_3114 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:pmy00340] D Pmen_0883 ATP phosphoribosyltransferase (homohexameric) K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Pmen_0640 tRNA synthetase, class II (G, H, P and S) K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D Pmen_0519 phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D Pmen_4539 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D Pmen_0520 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D Pmen_4253 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Pmen_4255 imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Pmen_4252 imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Pmen_4256 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D Pmen_0885 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pmen_1851 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pmen_0884 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D Pmen_4069 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Pmen_4070 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D Pmen_4073 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D Pmen_4072 formiminoglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8] D Pmen_0440 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pmen_4038 Methyltransferase type 12 K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44] C 00350 Tyrosine metabolism [PATH:pmy00350] D Pmen_3114 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pmen_0885 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pmen_1851 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pmen_2738 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Pmen_1696 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Pmen_1697 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Pmen_1699 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D Pmen_1698 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D Pmen_3028 Alcohol dehydrogenase GroES domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Pmen_0120 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pmen_1340 5-carboxymethyl-2-hydroxymuconate isomerase-like protein K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] D Pmen_3441 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pmen_0231 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:pmy00360] D Pmen_3112 Phenylalanine 4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D Pmen_3114 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pmen_0885 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pmen_1851 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pmen_2738 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Pmen_1696 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Pmen_0245 D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D Pmen_3881 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D Pmen_1657 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00380 Tryptophan metabolism [PATH:pmy00380] D Pmen_2502 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Pmen_1104 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2501 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_4429 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Pmen_1580 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Pmen_2590 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pmen_3662 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3820 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3597 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1138 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2591 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2036 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1725 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_0745 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_0440 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pmen_1657 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Pmen_2273 Catalase K03781 katE; catalase [EC:1.11.1.6] D Pmen_3881 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pmy00400] D Pmen_2140 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Pmen_2552 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Pmen_2961 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Pmen_0548 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Pmen_0715 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D Pmen_0061 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Pmen_0547 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Pmen_1852 3-phosphoshikimate 1-carboxyvinyltransferase K24018 K24018; cyclohexadieny/prephenate dehydrogenase / 3-phosphoshikimate 1-carboxyvinyltransferase [EC:1.3.1.43 1.3.1.12 2.5.1.19] D Pmen_1882 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Pmen_3997 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Pmen_3946 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Pmen_3945 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Pmen_2716 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D Pmen_3944 indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D Pmen_0070 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Pmen_0071 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Pmen_1850 prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D Pmen_3114 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pmen_0885 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pmen_1851 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pmen_2738 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Pmen_3112 Phenylalanine 4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:pmy00410] D Pmen_0440 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pmen_3593 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Pmen_3695 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Pmen_1580 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Pmen_2590 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pmen_2037 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Pmen_1377 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_4593 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_3694 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pmen_0414 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:pmy00430] D Pmen_4193 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Pmen_0473 L-alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Pmen_2928 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Pmen_3645 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pmen_3644 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:pmy00440] D Pmen_2884 phosphonate metabolism K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37] D Pmen_2886 phosphonate metabolism PhnG K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37] D Pmen_2885 phosphonate metabolism K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37] D Pmen_2881 phosphonate C-P lyase system protein PhnL K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37] D Pmen_2880 phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D Pmen_2883 phosphonate metabolism PhnJ K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1] D Pmen_2878 beta-lactamase domain protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:pmy00450] D Pmen_2159 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Pmen_1683 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Pmen_2389 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Pmen_0891 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D Pmen_0890 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Pmen_2455 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Pmen_1405 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:pmy00460] D Pmen_3237 glycoside hydrolase, family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Pmen_4193 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Pmen_0136 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Pmen_1344 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pmen_4132 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pmen_0759 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:pmy00470] D Pmen_0247 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Pmen_0650 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Pmen_0924 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pmen_0139 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Pmen_1063 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Pmen_0920 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Pmen_3266 D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D Pmen_2010 D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D Pmen_0266 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Pmen_0267 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Pmen_3567 FAD dependent oxidoreductase K19746 dauA; D-arginine dehydrogenase [EC:1.4.99.6] D Pmen_3566 ornithine cyclodeaminase K19744 dauB; L-arginine dehydrogenase [EC:1.4.1.25] D Pmen_0227 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Pmen_0245 D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:pmy00480] D Pmen_4193 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Pmen_3378 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D Pmen_0807 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D Pmen_3379 Allophanate hydrolase subunit 1 K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9] D Pmen_3380 urea amidolyase related protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D Pmen_2301 glutamate--cysteine ligase, GCS2 K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D Pmen_0356 glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Pmen_0402 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Pmen_3527 aminopeptidase A, Metallo peptidase, MEROPS family M17 K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Pmen_2939 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Pmen_3224 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pmen_2670 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pmen_0933 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pmen_1914 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pmen_2351 NADPH-glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D Pmen_2397 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Pmen_2396 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Pmen_3143 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Pmen_4486 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Pmen_3641 Peroxiredoxin K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D Pmen_1762 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D Pmen_1909 Peroxiredoxin K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D Pmen_0801 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:pmy00540] D Pmen_3041 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Pmen_0928 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Pmen_3043 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Pmen_2574 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Pmen_3040 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Pmen_1614 lipid-A-disaccharide kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Pmen_0875 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Pmen_3034 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Pmen_0874 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Pmen_1616 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Pmen_0611 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Pmen_0016 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Pmen_1236 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Pmen_1064 hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D Pmen_0909 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Pmen_1230 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Pmen_0597 D-alpha,beta-D-heptose 7-phosphate 1-kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D Pmen_0012 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Pmen_0580 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D Pmen_0579 lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D Pmen_0582 lipopolysaccharide kinase K02848 waaP; lipopolysaccharide core heptose(I) kinase [EC:2.7.1.235] D Pmen_0581 glycosyl transferase, group 1 K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:pmy00541] D Pmen_2353 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pmen_2307 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pmen_3874 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pmen_2339 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pmen_0076 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pmen_2341 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D Pmen_2354 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Pmen_4290 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Pmen_4289 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Pmen_4291 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Pmen_4292 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Pmen_1870 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Pmen_3875 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Pmen_0311 oxidoreductase FAD/NAD(P)-binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D Pmen_1020 mannose-6-phosphate isomerase, type 2 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pmen_1677 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pmen_4287 mannose-6-phosphate isomerase, type 2 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pmen_4605 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Pmen_1709 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Pmen_1873 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Pmen_1872 polysaccharide biosynthesis protein CapD K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D Pmen_1878 polysaccharide biosynthesis protein CapD K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135] D Pmen_1874 NAD-dependent epimerase/dehydratase K24310 wbpV; UDP-N-acetyl-alpha-D-quinovosamine dehydrogenase [EC:1.1.1.426] D Pmen_1857 UDP-glucose/GDP-mannose dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136] D Pmen_1858 oxidoreductase domain protein K13016 wbpB; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] D Pmen_1860 DegT/DnrJ/EryC1/StrS aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] D Pmen_1859 Serine acetyltransferase-like protein K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201] C 00550 Peptidoglycan biosynthesis [PATH:pmy00550] D Pmen_0882 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Pmen_1618 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Pmen_0923 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Pmen_0920 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Pmen_0917 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Pmen_0924 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pmen_0918 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Pmen_3049 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Pmen_2175 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Pmen_0919 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Pmen_0922 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Pmen_4170 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Pmen_0541 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Pmen_1002 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D Pmen_0732 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D Pmen_3798 cell elongation-specific peptidoglycan D,D-transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Pmen_0916 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Pmen_3794 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Pmen_3008 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:pmy00552] D Pmen_2175 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Pmen_1878 polysaccharide biosynthesis protein CapD K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:pmy00543] D Pmen_1030 hypothetical protein K19290 alg8; mannuronan synthase [EC:2.4.1.33] D Pmen_1676 hypothetical protein K19290 alg8; mannuronan synthase [EC:2.4.1.33] D Pmen_1029 type IV pilus assembly PilZ K19291 alg44; mannuronan synthase [EC:2.4.1.33] D Pmen_1675 type IV pilus assembly PilZ K19291 alg44; mannuronan synthase [EC:2.4.1.33] D Pmen_1023 membrane bound O-acyl transferase, MBOAT family protein K19294 algI; alginate O-acetyltransferase complex protein AlgI D Pmen_1672 membrane bound O-acyl transferase, MBOAT family protein K19294 algI; alginate O-acetyltransferase complex protein AlgI D Pmen_1022 hypothetical protein K19295 algJ; alginate O-acetyltransferase complex protein AlgJ D Pmen_1671 hypothetical protein K19295 algJ; alginate O-acetyltransferase complex protein AlgJ D Pmen_1021 hypothetical protein K19296 algF; alginate O-acetyltransferase complex protein AlgF D Pmen_1670 hypothetical protein K19296 algF; alginate O-acetyltransferase complex protein AlgF D Pmen_1025 hypothetical protein K19293 algX; alginate biosynthesis protein AlgX D Pmen_1669 hypothetical protein K19293 algX; alginate biosynthesis protein AlgX D Pmen_4288 sugar transferase K20997 pslA; polysaccharide biosynthesis protein PslA D Pmen_4286 glycosyl transferase, family 2 K25205 pslC; polysaccharide biosynthesis protein PslC D Pmen_4283 glycosyl transferase, group 1 K20999 pslF; polysaccharide biosynthesis protein PslF D Pmen_4281 glycosyl transferase, group 1 K21001 pslH; polysaccharide biosynthesis protein PslH D Pmen_4280 glycosyl transferase, group 1 K21002 pslI; polysaccharide biosynthesis protein PslI D Pmen_3513 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Pmen_4275 acyltransferase 3 K16568 exoZ; exopolysaccharide production protein ExoZ B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:pmy00730] D Pmen_0609 hydroxymethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Pmen_3772 Phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D Pmen_3511 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Pmen_4139 [ThiS-adenylate] sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Pmen_0964 glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19] D Pmen_3844 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Pmen_4167 thiazole-phosphate synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D Pmen_3773 thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Pmen_3852 thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D Pmen_0626 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Pmen_3359 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:pmy00740] D Pmen_3848 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Pmen_3855 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Pmen_3446 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Pmen_3857 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Pmen_0263 HAD-superfamily hydrolase, subfamily IA, variant 1 K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D Pmen_3854 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Pmen_3856 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Pmen_0952 FMN adenylyltransferase / riboflavin kinase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Pmen_4324 FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D Pmen_1752 cob(II)yrinic acid a,c-diamide reductase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79] D Pmen_0608 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Pmen_3825 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:pmy00750] D Pmen_1436 Pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D Pmen_0459 D-erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72] D Pmen_1908 4-phosphoerythronate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290] D Pmen_1849 phosphoserine aminotransferase apoenzyme K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Pmen_4012 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D Pmen_1478 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D Pmen_3393 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:pmy00760] D Pmen_1466 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Pmen_1282 quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D Pmen_0778 nicotinate-nucleotide pyrophosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D Pmen_1411 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D Pmen_1542 ATPase/kinase involved in NAD metabolism-like protein K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D Pmen_2548 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Pmen_1038 metallophosphoesterase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Pmen_3024 3'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Pmen_3801 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Pmen_1736 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Pmen_2071 NUDIX hydrolase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D Pmen_1410 NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D Pmen_3016 CinA domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D Pmen_2276 CinA domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D Pmen_1412 isochorismatase hydrolase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D Pmen_0790 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Pmen_2944 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D Pmen_1603 pyridine nucleotide-disulfide oxidoreductase dimerization region K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1] D Pmen_4431 NAD(P)(+) transhydrogenase (AB-specific) K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D Pmen_4432 NAD/NADP transhydrogenase alpha subunit-like protein K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D Pmen_4433 NAD(P)(+) transhydrogenase (AB-specific) K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D Pmen_3441 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pmen_0231 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:pmy00770] D Pmen_1006 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pmen_1795 thiamine pyrophosphate enzyme TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pmen_1007 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Pmen_1009 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Pmen_4205 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Pmen_3592 ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Pmen_2549 ketopantoate reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D Pmen_0937 ketopantoate reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D Pmen_3593 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Pmen_3925 putative transcriptional acitvator, Baf family K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D Pmen_4377 Phosphopantothenate-cysteine ligase / Phosphopantothenoylcysteine decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Pmen_1736 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Pmen_4191 Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Pmen_0772 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D Pmen_1122 protein of unknown function DUF479 K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14] D Pmen_0578 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pmen_0440 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:pmy00780] D Pmen_4085 pimeloyl-CoA biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D Pmen_2470 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Pmen_2335 3-oxoacyl-(acyl-carrier-protein) synthase-like protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Pmen_1630 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Pmen_3684 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_1628 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_0744 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_1509 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_3042 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Pmen_2056 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Pmen_4086 Carboxylesterase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D Pmen_4087 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Pmen_0413 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Pmen_4084 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D Pmen_4088 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D Pmen_3926 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:pmy00785] D Pmen_3792 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D Pmen_3791 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D Pmen_1104 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2501 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_0576 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Pmen_0575 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Pmen_2503 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Pmen_2502 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Pmen_3247 Pyruvate dehydrogenase (acetyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Pmen_3246 Transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Pmen_3245 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Pmen_1345 glycine dehydrogenase (decarboxylating) alpha subunit K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Pmen_0331 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_1343 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_3460 glycine cleavage T protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_3456 glycine cleavage T protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_1346 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Pmen_0332 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:pmy00790] D Pmen_3289 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D Pmen_2744 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D Pmen_4538 GTP cyclohydrolase I K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D Pmen_4023 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D Pmen_3591 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Pmen_4022 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Pmen_3614 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Pmen_4209 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D Pmen_2714 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Pmen_3848 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Pmen_3855 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Pmen_3446 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Pmen_2540 aminodeoxychorismate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D Pmen_1631 aminodeoxychorismate lyase apoprotein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D Pmen_3290 dihydroneopterin aldolase K07589 folX; D-erythro-7,8-dihydroneopterin triphosphate epimerase [EC:5.1.99.7] D Pmen_3288 short-chain dehydrogenase/reductase SDR K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3] D Pmen_1990 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Pmen_3113 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Pmen_3112 Phenylalanine 4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D Pmen_1280 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Pmen_1281 preQ(0) biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Pmen_1923 GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Pmen_1639 molybdenum cofactor synthesis domain protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Pmen_2766 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Pmen_1034 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Pmen_1036 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Pmen_1744 molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D Pmen_1745 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Pmen_1142 Uncharacterized MobA-related protein-like protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D Pmen_1743 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:pmy00670] D Pmen_4209 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D Pmen_3288 short-chain dehydrogenase/reductase SDR K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3] D Pmen_3458 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Pmen_2048 methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Pmen_3471 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Pmen_1344 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pmen_4132 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pmen_0759 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pmen_2997 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Pmen_0708 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Pmen_0054 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Pmen_0331 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_1343 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_3460 glycine cleavage T protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_3456 glycine cleavage T protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pmen_2159 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Pmen_4213 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D Pmen_3312 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Pmen_4127 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Pmen_3457 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Pmen_3470 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Pmen_0448 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Pmen_0321 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:pmy00860] D Pmen_2733 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pmen_1059 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D Pmen_3774 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Pmen_4524 aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Pmen_0299 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Pmen_0280 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D Pmen_0281 Uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D Pmen_0552 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D Pmen_0060 Coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D Pmen_2613 coproporphyrinogen III oxidase, anaerobic K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D Pmen_3934 conserved hypothetical protein 701 K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D Pmen_2264 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D Pmen_1077 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D Pmen_0282 protein of unknown function DUF513, hemX K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D Pmen_2383 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D Pmen_2093 uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D Pmen_0150 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Pmen_0149 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Pmen_4573 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D Pmen_4571 precorrin-3B synthase K02229 cobG; precorrin-3B synthase [EC:1.14.13.83] D Pmen_4574 precorrin-3 methyltransferase K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131] D Pmen_4589 precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D Pmen_4588 cobalamin (vitamin B12) biosynthesis CbiG protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D Pmen_4583 precorrin-6A synthase (deacetylating) K02228 cobF; precorrin-6A synthase [EC:2.1.1.152] D Pmen_4569 precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D Pmen_4570 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D Pmen_4572 precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D Pmen_1751 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D Pmen_4586 cobaltochelatase CobN subunit K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2] D Pmen_0935 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Pmen_1750 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Pmen_1755 adenosylcobyric acid synthase (glutamine-hydrolysing) K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D Pmen_1753 adenosylcobinamide-phosphate synthase K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D Pmen_1754 aminotransferase K02225 cobC1; cobalamin biosynthesis protein CobC D Pmen_1756 adenosylcobinamide kinase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D Pmen_1759 cobalamin-5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D Pmen_1757 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D Pmen_1758 Phosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D Pmen_4585 protoporphyrin IX magnesium-chelatase K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1] D Pmen_4507 heme oxygenase K07215 pigA; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] D Pmen_3685 pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] D Pmen_3349 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] D Pmen_3880 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pmy00130] D Pmen_1273 4-hydroxybenzoyl-CoA thioesterase K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] D Pmen_4410 chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40] D Pmen_4409 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Pmen_0310 3-octaprenyl-4hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D Pmen_3825 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Pmen_0327 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D Pmen_1845 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D Pmen_0326 2-octaprenyl-6-methoxyphenol hydroxylase / 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D Pmen_0523 demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D Pmen_3941 Ubiquinone biosynthesis protein COQ7-like protein K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D Pmen_2463 thioesterase superfamily protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D Pmen_3208 NAD(P)H dehydrogenase (quinone) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D Pmen_1688 NAD(P)H dehydrogenase (quinone) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D Pmen_2990 flavodoxin/nitric oxide synthase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D Pmen_1696 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:pmy00900] D Pmen_3844 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Pmen_3047 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D Pmen_3031 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D Pmen_1056 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D Pmen_3026 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D Pmen_3500 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D Pmen_0956 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D Pmen_3662 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3820 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3597 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1138 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2591 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2036 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1725 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_0745 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3825 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Pmen_3841 farnesyl-diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Pmen_3683 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Pmen_3049 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation [PATH:pmy00903] D Pmen_0440 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pmen_1891 Alpha/beta hydrolase fold-3 domain protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00907 Pinene, camphor and geraniol degradation [PATH:pmy00907] D Pmen_1580 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Pmen_2590 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pmen_3746 Alcohol dehydrogenase GroES domain protein K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183] D Pmen_2690 short-chain dehydrogenase/reductase SDR K13774 atuB; citronellol/citronellal dehydrogenase D Pmen_2695 short-chain dehydrogenase/reductase SDR K13775 atuG; citronellol/citronellal dehydrogenase D Pmen_2696 AMP-dependent synthetase and ligase K13776 atuH; citronellyl-CoA synthetase [EC:6.2.1.-] D Pmen_2692 acyl-CoA dehydrogenase domain protein K11731 atuD; citronellyl-CoA dehydrogenase [EC:1.3.99.-] D Pmen_2694 Carbamoyl-phosphate synthase L chain, ATP-binding protein K13777 atuF; geranyl-CoA carboxylase alpha subunit [EC:6.4.1.5] D Pmen_2691 Propionyl-CoA carboxylase K13778 atuC; geranyl-CoA carboxylase beta subunit [EC:6.4.1.5] D Pmen_2693 Enoyl-CoA hydratase/isomerase K13779 atuE; isohexenylglutaconyl-CoA hydratase [EC:4.2.1.57] D Pmen_2029 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Pmen_1581 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Pmen_3228 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Pmen_0458 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:pmy00523] D Pmen_4290 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Pmen_4289 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Pmen_4291 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Pmen_4292 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Pmen_1870 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Pmen_3875 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides D Pmen_3148 4'-phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] C 01055 Biosynthesis of vancomycin group antibiotics [PATH:pmy01055] D Pmen_0804 FMN-dependent alpha-hydroxy acid dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] D Pmen_4289 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:pmy00946] D Pmen_3237 glycoside hydrolase, family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D Pmen_4240 peptidase S45, penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] C 00332 Carbapenem biosynthesis [PATH:pmy00332] D Pmen_3679 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Pmen_3802 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:pmy00261] D Pmen_0804 FMN-dependent alpha-hydroxy acid dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] D Pmen_2864 MbtH domain protein K05375 mbtH; MbtH protein D Pmen_0891 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D Pmen_0890 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Pmen_2902 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Pmen_2720 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Pmen_1663 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Pmen_3622 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:pmy00521] D Pmen_1147 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Pmen_4379 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pmen_3515 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Pmen_4290 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Pmen_4289 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Pmen_4291 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Pmen_4292 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Pmen_1870 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Pmen_3875 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D Pmen_1147 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:pmy00525] D Pmen_4290 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Pmen_4289 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:pmy00401] D Pmen_1852 3-phosphoshikimate 1-carboxyvinyltransferase K24018 K24018; cyclohexadieny/prephenate dehydrogenase / 3-phosphoshikimate 1-carboxyvinyltransferase [EC:1.3.1.43 1.3.1.12 2.5.1.19] D Pmen_3114 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pmen_0885 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pmen_1851 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pmen_2738 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D Pmen_3997 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Pmen_3946 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Pmen_1627 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Pmen_3684 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_1628 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_0744 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_1509 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_2056 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Pmen_1629 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:pmy00999] D Pmen_0454 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Pmen_0061 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Pmen_3237 glycoside hydrolase, family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites D Pmen_2862 hypothetical protein K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:pmy00362] D Pmen_1295 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D Pmen_1581 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Pmen_3228 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Pmen_0474 intradiol ring-cleavage dioxygenase K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] D Pmen_3442 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Pmen_0850 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Pmen_1273 4-hydroxybenzoyl-CoA thioesterase K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] D Pmen_2590 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pmen_1580 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Pmen_2892 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Pmen_4429 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Pmen_3662 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3820 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3597 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1138 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2591 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2036 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1725 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_0745 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:pmy00627] D Pmen_0374 flavoprotein involved in K+ transport-like protein K10215 ethA; monooxygenase [EC:1.14.13.-] D Pmen_1657 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Pmen_3825 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:pmy00625] D Pmen_0120 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pmen_3028 Alcohol dehydrogenase GroES domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Pmen_0440 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pmen_4126 glutathione-independent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D Pmen_1957 Pyrrolo-quinoline quinone K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D Pmen_1963 Pyrrolo-quinoline quinone K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation [PATH:pmy00633] D Pmen_2015 dihydropteridine reductase K10679 nfnB; nitroreductase / dihydropteridine reductase [EC:1.-.-.- 1.5.1.34] D Pmen_2005 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation D Pmen_1581 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Pmen_3228 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:pmy00643] D Pmen_1697 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Pmen_1699 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D Pmen_1698 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D Pmen_1657 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Pmen_4049 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] C 00791 Atrazine degradation [PATH:pmy00791] D Pmen_0704 Amidase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D Pmen_4501 isochorismatase hydrolase K23359 biuH; biuret amidohydrolase [EC:3.5.1.84] D Pmen_3479 isochorismatase hydrolase K23359 biuH; biuret amidohydrolase [EC:3.5.1.84] D Pmen_0703 urea amidolyase related protein K01941 uca; urea carboxylase [EC:6.3.4.6] D Pmen_1358 biotin carboxylation domain protein K01941 uca; urea carboxylase [EC:6.3.4.6] D Pmen_0692 urease, Metallo peptidase, MEROPS family M38 K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Pmen_0693 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D Pmen_0695 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:pmy00930] D Pmen_2750 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D Pmen_0443 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D Pmen_1891 Alpha/beta hydrolase fold-3 domain protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] D Pmen_1580 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Pmen_2590 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:pmy00626] D Pmen_0120 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pmen_3028 Alcohol dehydrogenase GroES domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation D Pmen_0474 intradiol ring-cleavage dioxygenase K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation C 00984 Steroid degradation D Pmen_3451 flavin reductase domain protein, FMN-binding protein K16048 hsaB; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase reductase component [EC:1.5.1.-] C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:pmy03020] D Pmen_3916 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Pmen_3915 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Pmen_3884 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Pmen_4389 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D Pmen_4111 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:pmy03010] D Pmen_1854 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1 D Pmen_3053 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D Pmen_3903 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D Pmen_3885 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D Pmen_3892 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D Pmen_0645 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6 D Pmen_3913 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7 D Pmen_3895 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8 D Pmen_0902 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D Pmen_3910 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D Pmen_3886 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D Pmen_3914 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D Pmen_3887 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D Pmen_3896 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14 D Pmen_3605 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D Pmen_3401 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D Pmen_3900 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D Pmen_0646 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18 D Pmen_3905 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D Pmen_0950 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20 D Pmen_4026 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21 D Pmen_3919 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1 D Pmen_3906 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D Pmen_3909 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D Pmen_3908 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D Pmen_3897 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D Pmen_3894 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D Pmen_3917 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12 D Pmen_0648 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9 D Pmen_3918 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10 D Pmen_3920 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D Pmen_0901 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D Pmen_3899 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Pmen_3890 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D Pmen_3902 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16 D Pmen_3883 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17 D Pmen_3893 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D Pmen_3398 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19 D Pmen_1979 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D Pmen_3682 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D Pmen_3904 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D Pmen_3907 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23 D Pmen_3898 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D Pmen_1054 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25 D Pmen_3681 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27 D Pmen_4374 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28 D Pmen_3901 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29 D Pmen_3891 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D Pmen_0537 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D Pmen_1625 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32 D Pmen_4373 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33 D Pmen_4623 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34 D Pmen_1978 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35 D Pmen_3888 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36 D Pmen_R0008 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pmen_R0034 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pmen_R0074 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pmen_R0082 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pmen_R0011 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pmen_R0079 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pmen_R0037 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pmen_R0071 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pmen_R0012 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pmen_R0038 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pmen_R0078 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pmen_R0070 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:pmy00970] D Pmen_R0049 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pmen_R0051 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pmen_R0053 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pmen_R0010 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pmen_R0072 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pmen_R0036 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pmen_R0080 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pmen_R0001 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pmen_R0054 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pmen_R0039 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pmen_R0055 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pmen_R0057 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pmen_R0056 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pmen_R0004 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Pmen_R0027 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Pmen_R0021 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Pmen_R0060 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Pmen_R0059 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Pmen_R0044 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Pmen_R0014 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Pmen_R0015 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Pmen_R0028 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pmen_R0048 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pmen_R0030 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pmen_R0050 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pmen_R0052 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pmen_R0068 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pmen_R0022 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pmen_R0029 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pmen_R0045 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pmen_R0031 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pmen_R0040 tRNA-His K14226 tRNA-His; tRNA His D Pmen_R0009 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Pmen_R0081 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Pmen_R0035 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Pmen_R0073 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Pmen_R0041 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pmen_R0043 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pmen_R0065 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pmen_R0002 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pmen_R0003 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pmen_R0063 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pmen_R0006 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Pmen_R0019 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Pmen_R0075 tRNA-Met K14230 tRNA-Met; tRNA Met D Pmen_R0013 tRNA-Met K14230 tRNA-Met; tRNA Met D Pmen_R0024 tRNA-Met K14230 tRNA-Met; tRNA Met D Pmen_R0025 tRNA-Met K14230 tRNA-Met; tRNA Met D Pmen_R0064 tRNA-Met K14230 tRNA-Met; tRNA Met D Pmen_R0076 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Pmen_R0026 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Pmen_R0005 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Pmen_R0033 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Pmen_R0046 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pmen_R0058 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pmen_R0023 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pmen_R0042 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pmen_R0077 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pmen_R0067 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pmen_R0062 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pmen_R0066 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Pmen_R0069 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Pmen_R0020 tRNA-Val K14237 tRNA-Val; tRNA Val D Pmen_R0061 tRNA-Val K14237 tRNA-Val; tRNA Val D Pmen_R0032 tRNA-Val K14237 tRNA-Val; tRNA Val D Pmen_2733 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pmen_0854 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Pmen_0853 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Pmen_0855 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Pmen_2572 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Pmen_2903 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Pmen_1268 aspartate--tRNA(Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Pmen_0014 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Pmen_0013 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Pmen_1976 threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Pmen_2384 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Pmen_2571 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Pmen_1405 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Pmen_0054 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Pmen_3530 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Pmen_3786 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Pmen_0953 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Pmen_3370 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Pmen_0535 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Pmen_1258 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Pmen_3499 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Pmen_1980 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Pmen_1981 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Pmen_3927 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Pmen_1837 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Pmen_0894 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:pmy03060] D Pmen_3889 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Pmen_3922 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Pmen_3611 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Pmen_3518 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Pmen_3517 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Pmen_3519 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Pmen_4620 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Pmen_0931 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Pmen_4243 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Pmen_3402 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Pmen_R0047 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Pmen_4175 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Pmen_0518 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Pmen_0517 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Pmen_0516 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC D Pmen_1473 signal peptidase I, Serine peptidase, MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89] D Pmen_0954 signal peptidase II, Aspartic peptidase, MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:pmy04122] D Pmen_3511 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Pmen_1769 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Pmen_0622 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Pmen_4335 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Pmen_1905 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Pmen_1659 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Pmen_2379 DsrH family protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D Pmen_2378 DsrE family protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C D Pmen_2377 DsrE family protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D Pmen_2380 DsrC family protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D Pmen_2399 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Pmen_1036 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Pmen_1639 molybdenum cofactor synthesis domain protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Pmen_2766 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Pmen_1035 molybdopterin synthase subunit MoaD K03636 moaD; sulfur-carrier protein D Pmen_1062 UBA/THIF-type NAD/FAD binding protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D Pmen_1034 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Pmen_1744 molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D Pmen_4139 [ThiS-adenylate] sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Pmen_4168 sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:pmy03018] D Pmen_4218 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Pmen_1619 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D Pmen_3565 DEAD/DEAH box helicase domain protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D Pmen_3033 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Pmen_3604 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Pmen_0420 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Pmen_3728 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Pmen_0643 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Pmen_2144 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Pmen_1812 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Pmen_0369 ATP-dependent DNA helicase, RecQ-like protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Pmen_0309 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Pmen_3624 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Pmen_3688 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pmen_0635 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Pmen_0300 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Pmen_4078 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Pmen_3590 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:pmy03030] D Pmen_3729 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_4544 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_2067 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_4098 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_3038 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Pmen_2647 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Pmen_1634 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Pmen_3788 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Pmen_3528 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Pmen_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pmen_0649 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Pmen_4027 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Pmen_3876 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pmen_4263 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Pmen_2066 RNase HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Pmen_4262 hypothetical protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Pmen_3039 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Pmen_0154 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Pmen_2746 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Pmen_0453 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:pmy03410] D Pmen_1398 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Pmen_1381 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Pmen_4259 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Pmen_3805 methylpurine-DNA glycosylase (MPG) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D Pmen_4197 Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Pmen_1888 AlkA domain protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Pmen_0015 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Pmen_4147 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Pmen_2436 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Pmen_4384 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Pmen_0154 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Pmen_3376 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Pmen_2746 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Pmen_0453 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:pmy03420] D Pmen_1593 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Pmen_3878 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D Pmen_2737 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D Pmen_2374 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D Pmen_4513 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Pmen_0154 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Pmen_2746 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Pmen_0453 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Pmen_4111 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03430 Mismatch repair [PATH:pmy03430] D Pmen_0633 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Pmen_4513 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Pmen_3314 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D Pmen_3490 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Pmen_3840 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Pmen_3376 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Pmen_3876 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pmen_3038 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Pmen_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pmen_2647 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Pmen_3788 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Pmen_1634 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Pmen_3729 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_4544 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_2067 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_4098 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_3528 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Pmen_2746 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Pmen_0453 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:pmy03440] D Pmen_3376 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Pmen_3876 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pmen_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Pmen_1477 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Pmen_2645 recombination protein RecR K06187 recR; recombination protein RecR D Pmen_3015 RecA protein K03553 recA; recombination protein RecA D Pmen_0425 recA protein K03553 recA; recombination protein RecA D Pmen_0154 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Pmen_1271 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Pmen_1272 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Pmen_1270 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Pmen_4397 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Pmen_1986 DNA helicase/exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D Pmen_1985 DNA helicase/exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D Pmen_1987 DNA helicase/exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Pmen_3038 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Pmen_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pmen_2647 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Pmen_3788 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Pmen_1634 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Pmen_3729 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_4544 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_2067 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_4098 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_3528 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Pmen_0536 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining [PATH:pmy03450] D Pmen_3216 Ku domain protein K10979 ku; DNA end-binding protein Ku D Pmen_3217 ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:pmy03250] D Pmen_1294 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:pmy02010] D Pmen_4318 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D Pmen_4345 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D Pmen_4317 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Pmen_4346 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Pmen_4316 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Pmen_4347 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Pmen_4348 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Pmen_2105 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D Pmen_2104 nitrate ABC transporter, inner membrane subunit K15577 nrtB; nitrate/nitrite transport system permease protein D Pmen_2103 nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D Pmen_4331 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pmen_4323 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pmen_4333 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pmen_4321 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pmen_4330 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pmen_4320 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pmen_4329 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pmen_4339 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Pmen_4340 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Pmen_4341 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Pmen_0330 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Pmen_3343 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Pmen_0344 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Pmen_0346 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Pmen_0124 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Pmen_0340 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Pmen_0345 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Pmen_4052 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Pmen_0349 Ornithine carbamoyltransferase K11074 potI; putrescine transport system permease protein D Pmen_0348 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein D Pmen_0347 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D Pmen_0499 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pmen_0484 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pmen_0485 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pmen_0063 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pmen_0488 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pmen_0486 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Pmen_0487 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Pmen_3115 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein D Pmen_3116 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein D Pmen_3118 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein D Pmen_3117 ABC transporter related protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D Pmen_3132 maltooligosaccharide-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein D Pmen_3131 maltooligosaccharide ABC transporter membrane protein K10109 malF; maltose/maltodextrin transport system permease protein D Pmen_3130 maltooligosaccharide ABC transporter membrane protein K10110 malG; maltose/maltodextrin transport system permease protein D Pmen_3127 maltooligosaccharide ABC transporter ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pmen_4471 sorbitol ABC transporter ATP-binding protein / mannitol ABC transporter ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pmen_1153 glucose ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pmen_4468 sorbitol-binding protein / mannitol-binding protein K10227 smoE; polyol transport system substrate-binding protein D Pmen_4469 sorbitol ABC transporter membrane protein / mannitol ABC transporter membrane protein K10228 smoF; polyol transport system permease protein D Pmen_4470 mannitol ABC transporter membrane protein / sorbitol ABC transporter membrane protein K10229 smoG; polyol transport system permease protein D Pmen_0879 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Pmen_0878 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Pmen_0371 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Pmen_0373 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Pmen_0877 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Pmen_0880 anti-sigma-factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein D Pmen_0876 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Pmen_0372 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Pmen_1150 glucose-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein D Pmen_1151 glucose ABC transporter membrane protein K17316 gtsB; glucose/mannose transport system permease protein D Pmen_1152 glucose ABC transporter membrane protein K17317 gtsC; glucose/mannose transport system permease protein D Pmen_3830 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pmen_0686 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pmen_2047 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17321 glpV; glycerol transport system substrate-binding protein D Pmen_2044 carbohydrate ABC transporter membrane protein 1, CUT1 family K17322 glpP; glycerol transport system permease protein D Pmen_2045 carbohydrate ABC transporter membrane protein 2, CUT1 family K17323 glpQ; glycerol transport system permease protein D Pmen_2042 carbohydrate ABC transporter ATP-binding protein, CUT1 family K17324 glpS; glycerol transport system ATP-binding protein D Pmen_2043 carbohydrate ABC transporter ATP-binding protein, CUT1 family K17325 glpT; glycerol transport system ATP-binding protein D Pmen_2437 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Pmen_0179 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Pmen_4077 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Pmen_0180 binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein D Pmen_0181 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Pmen_0182 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Pmen_3197 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D Pmen_2889 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D Pmen_2888 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Pmen_3199 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Pmen_3200 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Pmen_3198 ABC transporter related protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Pmen_2890 phosphonate ABC transporter, ATPase subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Pmen_3560 amino acid ABC transporter substrate-binding protein, PAAT family K09969 aapJ; general L-amino acid transport system substrate-binding protein D Pmen_3559 amino acid ABC transporter membrane protein 1, PAAT family K09970 aapQ; general L-amino acid transport system permease protein D Pmen_3558 amino acid ABC transporter membrane protein 2, PAAT family K09971 aapM; general L-amino acid transport system permease protein D Pmen_3557 amino acid ABC transporter ATP-binding protein, PAAT family K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D Pmen_2009 L-cystine-binding protein / Diaminopimelate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D Pmen_2008 Diaminopimelate ABC transporter membrane protein / L-cystine ABC transporter membrane protein K10009 tcyB; L-cystine transport system permease protein D Pmen_2007 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D Pmen_2916 L-arginine-binding protein / L-ornithine-binding protein K10022 aotJ; arginine/ornithine transport system substrate-binding protein D Pmen_3578 L-ornithine-binding protein / L-arginine-binding protein K10022 aotJ; arginine/ornithine transport system substrate-binding protein D Pmen_1094 L-ornithine-binding protein / L-arginine-binding protein K10022 aotJ; arginine/ornithine transport system substrate-binding protein D Pmen_1098 amino acid ABC transporter substrate-binding protein, PAAT family K10022 aotJ; arginine/ornithine transport system substrate-binding protein D Pmen_2914 L-arginine ABC transporter membrane protein / L-ornithine ABC transporter membrane protein K10023 aotM; arginine/ornithine transport system permease protein D Pmen_1092 L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein K10023 aotM; arginine/ornithine transport system permease protein D Pmen_2915 L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein K10024 aotQ; arginine/ornithine transport system permease protein D Pmen_1093 L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein K10024 aotQ; arginine/ornithine transport system permease protein D Pmen_2913 L-ornithine ABC transporter ATP-binding protein / L-arginine ABC transporter ATP-binding protein K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1] D Pmen_1090 L-ornithine ABC transporter ATP-binding protein / L-arginine ABC transporter ATP-binding protein K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1] D Pmen_4270 amino acid ABC transporter substrate-binding protein, PAAT family K23055 K23055; putative lysine/arginine/ornithine/histidine/octopine transport system substrate-binding protein D Pmen_4271 amino acid ABC transporter membrane protein 1, PAAT family K23056 K23056; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein D Pmen_4272 amino acid ABC transporter membrane protein 2, PAAT family K23057 K23057; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein D Pmen_4269 amino acid ABC transporter ATP-binding protein, PAAT family K23058 K23058; putative lysine/arginine/ornithine/histidine/octopine transport system ATP-binding protein [EC:7.4.2.1] D Pmen_1387 L-valine-binding protein / L-isoleucine-binding protein / L-leucine-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pmen_4596 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pmen_3837 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pmen_1376 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pmen_1386 L-leucine ABC transporter membrane protein / L-valine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein K01997 livH; branched-chain amino acid transport system permease protein D Pmen_3836 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pmen_3835 monosaccharide ABC transporter ATP-binding protein, CUT2 family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pmen_1385 L-leucine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein / L-valine ABC transporter membrane protein K01998 livM; branched-chain amino acid transport system permease protein D Pmen_1384 L-isoleucine ABC transporter ATP-binding protein / L-valine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pmen_1383 L-leucine ABC transporter ATP-binding protein / L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pmen_2364 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D Pmen_4505 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D Pmen_4504 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Pmen_2366 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Pmen_2365 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein D Pmen_4503 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein D Pmen_0701 amino acid/amide ABC transporter substrate-binding protein, HAAT family K11959 urtA; urea transport system substrate-binding protein D Pmen_0700 amino acid/amide ABC transporter membrane protein 1, HAAT family K11960 urtB; urea transport system permease protein D Pmen_0699 amino acid/amide ABC transporter membrane protein 2, HAAT family K11961 urtC; urea transport system permease protein D Pmen_0698 ABC transporter related protein K11962 urtD; urea transport system ATP-binding protein D Pmen_0697 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K11963 urtE; urea transport system ATP-binding protein D Pmen_0841 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein D Pmen_0845 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein D Pmen_0844 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein D Pmen_4375 4-phytase K12368 dppA; dipeptide transport system substrate-binding protein D Pmen_0840 Alkaline phosphatase K12369 dppB; dipeptide transport system permease protein D Pmen_0839 binding-protein-dependent transport systems inner membrane component K12370 dppC; dipeptide transport system permease protein D Pmen_0838 oligopeptide/dipeptide ABC transporter, ATPase subunit K12371 dppD; dipeptide transport system ATP-binding protein D Pmen_0837 oligopeptide/dipeptide ABC transporter, ATPase subunit K12372 dppF; dipeptide transport system ATP-binding protein D Pmen_2060 extracellular solute-binding protein, family 5 K13893 yejA; microcin C transport system substrate-binding protein D Pmen_2061 extracellular solute-binding protein, family 5 K13893 yejA; microcin C transport system substrate-binding protein D Pmen_2059 binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein D Pmen_2058 binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein D Pmen_2057 ABC transporter related protein K13896 yejF; microcin C transport system ATP-binding protein D Pmen_2865 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D Pmen_3767 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D Pmen_3768 transport system permease protein K23228 fhuB; ferric hydroxamate transport system permease protein D Pmen_2866 transport system permease protein K23228 fhuB; ferric hydroxamate transport system permease protein D Pmen_3769 ABC transporter related protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D Pmen_2860 ABC transporter related protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D Pmen_3846 periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein D Pmen_4495 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein D Pmen_4498 ABC-3 protein K09816 znuB; zinc transport system permease protein D Pmen_4497 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Pmen_1607 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Pmen_1609 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Pmen_1608 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Pmen_2788 Heme exporter protein D (CcmD) K02196 ccmD; heme exporter protein D D Pmen_2789 heme exporter protein CcmC K02195 ccmC; heme exporter protein C D Pmen_2790 heme exporter protein CcmB K02194 ccmB; heme exporter protein B D Pmen_2791 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Pmen_3526 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Pmen_3525 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Pmen_0871 ABC transporter related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Pmen_4173 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D Pmen_4174 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Pmen_0594 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Pmen_1307 ABC transporter related protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D Pmen_1803 ABC transporter related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Pmen_0720 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D Pmen_2872 cyclic peptide transporter K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:pmy02060] D Pmen_0786 PTS system D-fructose-specific IIA component (F1P-forming), Frc family / Phosphocarrier protein HPr K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D Pmen_0788 PTS system D-fructose-specific IIC component (F1P-forming), Frc family / PTS system D-fructose-specific IIB component (F1P-forming), Frc family K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Pmen_0787 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D Pmen_4217 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D Pmen_0866 Phosphotransferase system, phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr D Pmen_0868 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:pmy03070] D Pmen_0610 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pmen_0718 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pmen_0023 type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C D Pmen_0038 type III secretion outer membrane protein PopN K04058 yscW; type III secretion protein W D Pmen_0028 type III secretion apparatus lipoprotein, YscJ/HrcJ family K03222 yscJ; type III secretion protein J D Pmen_0046 Yop virulence translocation R K03226 yscR; type III secretion protein R D Pmen_0047 type III secretion protein, HrpO family K03227 yscS; type III secretion protein S D Pmen_0048 type III secretion protein SpaR/YscT/HrcT K03228 yscT; type III secretion protein T D Pmen_0049 type III secretion protein, YscU/HrpY family K03229 yscU; type III secretion protein U D Pmen_0039 type III secretion protein, HrcV family K03230 yscV; type III secretion protein V D Pmen_0041 ATPase, FliI/YscN family K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D Pmen_0044 hypothetical protein K03225 yscQ; type III secretion protein Q D Pmen_0045 surface presentation of antigens (SPOA) protein K03225 yscQ; type III secretion protein Q D Pmen_0026 type III secretion apparatus protein, HrpE/YscL family K03223 yscL; type III secretion protein L D Pmen_4160 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D Pmen_2927 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D Pmen_4163 hypothetical protein K02452 gspC; general secretion pathway protein C D Pmen_2926 hypothetical protein K02452 gspC; general secretion pathway protein C D Pmen_2924 general secretion pathway protein F K02455 gspF; general secretion pathway protein F D Pmen_0688 type II secretion system protein K02455 gspF; general secretion pathway protein F D Pmen_2923 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D Pmen_2922 general secretion pathway protein H K02457 gspH; general secretion pathway protein H D Pmen_2921 general secretion pathway protein I K02458 gspI; general secretion pathway protein I D Pmen_2920 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D Pmen_2919 General secretion pathway protein K K02460 gspK; general secretion pathway protein K D Pmen_2918 general secretion pathway protein L K02461 gspL; general secretion pathway protein L D Pmen_2917 General secretion pathway M protein K02462 gspM; general secretion pathway protein M D Pmen_2925 type II secretion system protein E (GspE) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Pmen_4301 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Pmen_3518 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Pmen_3517 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Pmen_3922 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Pmen_3611 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Pmen_3889 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Pmen_3519 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Pmen_4620 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Pmen_0931 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Pmen_4175 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Pmen_4243 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Pmen_3402 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Pmen_0518 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Pmen_0517 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Pmen_0516 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC D Pmen_0107 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D Pmen_4488 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D Pmen_0820 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D Pmen_2332 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D Pmen_4487 protein of unknown function DUF796 K11903 hcp; type VI secretion system secreted protein Hcp D Pmen_2324 protein of unknown function DUF796 K11903 hcp; type VI secretion system secreted protein Hcp D Pmen_2319 conserved hypothetical protein K11906 vasD; type VI secretion system protein VasD D Pmen_0101 conserved hypothetical protein K11906 vasD; type VI secretion system protein VasD D Pmen_0104 ImcF domain protein K11891 impL; type VI secretion system protein ImpL D Pmen_2316 ImcF domain protein K11891 impL; type VI secretion system protein ImpL D Pmen_0103 conserved hypothetical protein K11892 impK; type VI secretion system protein ImpK D Pmen_2317 OmpA/MotB domain protein K11892 impK; type VI secretion system protein ImpK D Pmen_0097 ATPase AAA-2 domain protein K11907 vasG; type VI secretion system protein VasG D Pmen_2331 ATPase AAA-2 domain protein K11907 vasG; type VI secretion system protein VasG D Pmen_2313 protein kinase K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] D Pmen_2320 putative FHA domain containing protein K11913 fha1; type VI secretion system protein D Pmen_2314 protein phosphatase 2C domain protein K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16] D Pmen_0105 protein phosphatase 2C domain protein K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16] B B 09132 Signal transduction C 02020 Two-component system [PATH:pmy02020] D Pmen_4407 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Pmen_4408 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Pmen_2437 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Pmen_0179 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Pmen_4077 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Pmen_2975 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Pmen_2976 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Pmen_0360 Osmolarity sensor protein envZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Pmen_0359 Two-component response regulator OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Pmen_1831 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Pmen_3149 integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D Pmen_3150 two component transcriptional regulator, winged helix family K07661 rstA; two-component system, OmpR family, response regulator RstA D Pmen_1471 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Pmen_4119 integral membrane sensor signal transduction histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D Pmen_4120 two component transcriptional regulator, winged helix family K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D Pmen_2431 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D Pmen_2430 acriflavin resistance protein K07788 mdtB; multidrug efflux pump D Pmen_2429 acriflavin resistance protein K07789 mdtC; multidrug efflux pump D Pmen_1173 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Pmen_2235 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Pmen_1174 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Pmen_2234 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Pmen_2654 conserved hypothetical protein K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF D Pmen_2211 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Pmen_2212 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein D Pmen_2835 flagellin domain protein K02406 fliC; flagellin D Pmen_0196 flagellin domain protein K02406 fliC; flagellin D Pmen_2805 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Pmen_0191 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Pmen_2800 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_0192 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_0624 Flagellar motor component-like protein K02556 motA; chemotaxis protein MotA D Pmen_1299 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_1460 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Pmen_1459 two component transcriptional regulator, winged helix family K07774 tctD; two-component system, OmpR family, response regulator TctD D Pmen_1211 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Pmen_1455 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Pmen_1456 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Pmen_1212 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Pmen_1457 Uncharacterized protein UPF0065 K07795 tctC; putative tricarboxylic transport membrane protein D Pmen_1213 Uncharacterized protein UPF0065 K07795 tctC; putative tricarboxylic transport membrane protein D Pmen_0149 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Pmen_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Pmen_1260 outer membrane porin K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D Pmen_1097 outer membrane porin K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D Pmen_1732 integral membrane sensor signal transduction histidine kinase K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3] D Pmen_0795 integral membrane sensor signal transduction histidine kinase K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3] D Pmen_1731 two component transcriptional regulator, winged helix family K19610 pfeR; two-component system, OmpR family, response regulator PfeR D Pmen_0794 two component transcriptional regulator, winged helix family K19610 pfeR; two-component system, OmpR family, response regulator PfeR D Pmen_0278 Sensory transduction protein kinase AlgZ K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D Pmen_0279 Two-component response regulator AlgR K08083 algR; two-component system, LytTR family, response regulator AlgR D Pmen_1031 GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] D Pmen_1678 GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] D Pmen_3452 putative PAS/PAC sensor protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D Pmen_1950 integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D Pmen_1730 multi-sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Pmen_2375 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Pmen_1951 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Pmen_2901 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Pmen_2038 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D Pmen_3055 metal dependent phosphohydrolase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D Pmen_4143 PAS/PAC sensor signal transduction histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Pmen_4144 nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Pmen_4140 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0341 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_2858 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0342 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0676 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_3468 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_2634 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_4366 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_4525 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_3589 Two-component response regulator CbrB K07713 zraR; two-component system, NtrC family, response regulator HydG D Pmen_1137 short chain fatty acid transporter K02106 atoE; short-chain fatty acids transporter D Pmen_3662 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3820 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3597 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1138 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2591 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2036 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1725 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_0745 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_4293 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pmen_4562 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pmen_4561 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Pmen_4294 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Pmen_0966 Sensor protein PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D Pmen_0965 Two-component response regulator PilR K02667 pilR; two-component system, NtrC family, response regulator PilR D Pmen_0870 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor D Pmen_0777 Fimbrial protein pilin K02650 pilA; type IV pilus assembly protein PilA D Pmen_0175 Alginate biosynthesis sensor protein KinB K11383 kinB; two-component system, NtrC family, sensor histidine kinase KinB [EC:2.7.13.3] D Pmen_0176 Two-component response regulator AlgB K11384 algB; two-component system, NtrC family, response regulator AlgB D Pmen_0170 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Pmen_1565 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Pmen_2851 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Pmen_2000 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1701 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_3139 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_3218 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_0734 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_0782 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2174 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1353 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1210 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1567 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1571 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1998 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2154 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2974 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_3309 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_3669 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2451 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2471 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2650 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_4367 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1902 methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor D Pmen_1800 methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor D Pmen_4451 methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor D Pmen_2796 putative CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Pmen_2797 putative CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Pmen_1566 putative CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Pmen_2802 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Pmen_1568 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Pmen_2804 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Pmen_1570 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Pmen_2801 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Pmen_1564 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Pmen_0171 CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Pmen_2185 putative CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Pmen_2852 putative CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Pmen_1572 CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Pmen_0407 Protein-glutamate O-methyltransferase K02661 pilK; type IV pilus assembly protein PilK D Pmen_0406 methyl-accepting chemotaxis sensory transducer K02660 pilJ; twitching motility protein PilJ D Pmen_0405 putative CheW protein K02659 pilI; twitching motility protein PilI D Pmen_0408 CheA signal transduction histidine kinase K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D Pmen_0403 response regulator receiver protein K02657 pilG; twitching motility two-component system response regulator PilG D Pmen_0404 response regulator receiver protein K02658 pilH; twitching motility two-component system response regulator PilH D Pmen_0409 CheB methylesterase K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D Pmen_0410 putative CheW protein K06598 chpC; chemosensory pili system protein ChpC D Pmen_4295 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP D Pmen_0218 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP D Pmen_2426 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP D Pmen_4296 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Pmen_4297 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Pmen_4044 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Pmen_3815 response regulator receiver protein K14987 fixJ; two-component system, LuxR family, response regulator FixJ D Pmen_2829 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Pmen_2828 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Pmen_2827 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Pmen_4419 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Pmen_3943 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Pmen_4353 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Pmen_1780 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Pmen_0139 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Pmen_0847 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Pmen_0848 two component transcriptional regulator, Fis family K15012 regA; two-component system, response regulator RegA D Pmen_0903 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Pmen_0904 Cytochrome b/b6, N-terminal domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Pmen_0905 Cytochrome c1-like protein K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Pmen_2197 cytochrome c, class I K08738 CYC; cytochrome c D Pmen_2599 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Pmen_2604 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Pmen_2605 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Pmen_2600 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Pmen_2606 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D Pmen_2601 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D Pmen_2607 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Pmen_2602 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Pmen_0746 cytochrome bd quinol oxidase subunit 1 apoprotein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Pmen_0747 cytochrome bd quinol oxidase subunit 2 apoprotein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Pmen_0610 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pmen_0718 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pmen_1617 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D Pmen_1709 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Pmen_1873 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Pmen_2673 RNA polymerase, sigma-24 subunit, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D Pmen_4509 putative FecR K07165 fecR; transmembrane sensor D Pmen_2674 putative FecR K07165 fecR; transmembrane sensor D Pmen_1911 integral membrane sensor hybrid histidine kinase K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3] D Pmen_2468 integral membrane sensor hybrid histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D Pmen_2818 Hpt protein K20976 hptB; histidine phosphotransfer protein HptB D Pmen_2819 response regulator receiver protein K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator D Pmen_2820 anti-sigma-factor antagonist K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor D Pmen_2854 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Pmen_4412 Anti-sigma-28 factor, FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:pmy04148] D Pmen_0801 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Pmen_0903 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:pmy02024] D Pmen_0635 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Pmen_3997 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Pmen_3946 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Pmen_2140 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Pmen_2552 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Pmen_2961 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Pmen_1703 Antibiotic biosynthesis monooxygenase K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32] D Pmen_1332 ABC-type Fe3+ transport system periplasmic component-like protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pmen_3447 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pmen_4002 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pmen_4201 Spermidine/putrescine-binding periplasmic protein-like protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pmen_1329 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pmen_3449 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pmen_4000 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pmen_4203 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pmen_3448 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pmen_1330 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pmen_4001 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pmen_4202 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pmen_1328 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pmen_3450 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pmen_4003 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pmen_4200 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pmen_1387 L-valine-binding protein / L-isoleucine-binding protein / L-leucine-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pmen_4596 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pmen_3837 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pmen_1376 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pmen_1386 L-leucine ABC transporter membrane protein / L-valine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein K01997 livH; branched-chain amino acid transport system permease protein D Pmen_3836 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pmen_3835 monosaccharide ABC transporter ATP-binding protein, CUT2 family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pmen_1385 L-leucine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein / L-valine ABC transporter membrane protein K01998 livM; branched-chain amino acid transport system permease protein D Pmen_1384 L-isoleucine ABC transporter ATP-binding protein / L-valine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pmen_1383 L-leucine ABC transporter ATP-binding protein / L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pmen_2970 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_1495 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_1496 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_2464 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_3943 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Pmen_4353 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Pmen_1780 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Pmen_4496 putative ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D Pmen_3848 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Pmen_3857 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Pmen_0736 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Pmen_3717 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Pmen_4620 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Pmen_4109 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Pmen_3922 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Pmen_3611 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Pmen_3889 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Pmen_3519 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Pmen_0931 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Pmen_4175 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Pmen_4243 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Pmen_3402 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa [PATH:pmy02025] D Pmen_0406 methyl-accepting chemotaxis sensory transducer K02660 pilJ; twitching motility protein PilJ D Pmen_0405 putative CheW protein K02659 pilI; twitching motility protein PilI D Pmen_0408 CheA signal transduction histidine kinase K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D Pmen_0410 putative CheW protein K06598 chpC; chemosensory pili system protein ChpC D Pmen_0404 response regulator receiver protein K02658 pilH; twitching motility two-component system response regulator PilH D Pmen_0403 response regulator receiver protein K02657 pilG; twitching motility two-component system response regulator PilG D Pmen_1823 putative adenylate/guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D Pmen_0606 Calcineurin phosphoesterase C-terminal domain protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D Pmen_3943 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Pmen_4353 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Pmen_1780 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Pmen_2829 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Pmen_3997 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Pmen_3946 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Pmen_1730 multi-sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Pmen_3766 integral membrane sensor hybrid histidine kinase K20971 ladS; two-component system, sensor histidine kinase LadS D Pmen_0706 integral membrane sensor hybrid histidine kinase K20972 retS; two-component system, sensor histidine kinase RetS D Pmen_2375 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Pmen_1951 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Pmen_2901 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Pmen_1911 integral membrane sensor hybrid histidine kinase K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3] D Pmen_2468 integral membrane sensor hybrid histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D Pmen_2818 Hpt protein K20976 hptB; histidine phosphotransfer protein HptB D Pmen_2819 response regulator receiver protein K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator D Pmen_2820 anti-sigma-factor antagonist K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor D Pmen_2854 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Pmen_4412 Anti-sigma-28 factor, FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM D Pmen_2805 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Pmen_0191 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Pmen_2313 protein kinase K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] D Pmen_2314 protein phosphatase 2C domain protein K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16] D Pmen_0105 protein phosphatase 2C domain protein K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16] D Pmen_2315 conserved hypothetical protein K11890 impM; type VI secretion system protein ImpM D Pmen_0104 ImcF domain protein K11891 impL; type VI secretion system protein ImpL D Pmen_2316 ImcF domain protein K11891 impL; type VI secretion system protein ImpL D Pmen_0102 protein of unknown function DUF876 K11893 impJ; type VI secretion system protein ImpJ D Pmen_2318 protein of unknown function DUF876 K11893 impJ; type VI secretion system protein ImpJ D Pmen_2320 putative FHA domain containing protein K11913 fha1; type VI secretion system protein D Pmen_2321 ImpA domain protein K11902 impA; type VI secretion system protein ImpA D Pmen_2322 uncharacterized conserved protein UCP028301 K11901 impB; type VI secretion system protein ImpB D Pmen_0090 uncharacterized conserved protein UCP028301 K11901 impB; type VI secretion system protein ImpB D Pmen_2323 protein of unknown function DUF877 K11900 impC; type VI secretion system protein ImpC D Pmen_0091 protein of unknown function DUF877 K11900 impC; type VI secretion system protein ImpC D Pmen_4487 protein of unknown function DUF796 K11903 hcp; type VI secretion system secreted protein Hcp D Pmen_2324 protein of unknown function DUF796 K11903 hcp; type VI secretion system secreted protein Hcp D Pmen_0096 protein of unknown function DUF1305 K11895 impH; type VI secretion system protein ImpH D Pmen_2330 protein of unknown function DUF1305 K11895 impH; type VI secretion system protein ImpH D Pmen_0097 ATPase AAA-2 domain protein K11907 vasG; type VI secretion system protein VasG D Pmen_2331 ATPase AAA-2 domain protein K11907 vasG; type VI secretion system protein VasG D Pmen_3264 diguanylate cyclase K21019 sadC; diguanylate cyclase [EC:2.7.7.65] D Pmen_0735 diguanylate cyclase K21022 roeA; diguanylate cyclase [EC:2.7.7.65] D Pmen_2427 diguanylate cyclase/phosphodiesterase K21023 mucR; diguanylate cyclase [EC:2.7.7.65] D Pmen_3323 diguanylate cyclase/phosphodiesterase K21024 bifA; c-di-GMP phosphodiesterase [EC:3.1.4.52] D Pmen_4288 sugar transferase K20997 pslA; polysaccharide biosynthesis protein PslA D Pmen_1020 mannose-6-phosphate isomerase, type 2 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pmen_1677 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pmen_4287 mannose-6-phosphate isomerase, type 2 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pmen_4286 glycosyl transferase, family 2 K25205 pslC; polysaccharide biosynthesis protein PslC D Pmen_4285 polysaccharide export protein K20987 pslD; polysaccharide biosynthesis/export protein PslD D Pmen_4284 lipopolysaccharide biosynthesis protein K20998 pslE; polysaccharide biosynthesis protein PslE D Pmen_4283 glycosyl transferase, group 1 K20999 pslF; polysaccharide biosynthesis protein PslF D Pmen_4282 Beta-xylosidase-like protein K21000 pslG; polysaccharide biosynthesis protein PslG D Pmen_3268 Beta-xylosidase-like protein K21000 pslG; polysaccharide biosynthesis protein PslG D Pmen_4281 glycosyl transferase, group 1 K21001 pslH; polysaccharide biosynthesis protein PslH D Pmen_4280 glycosyl transferase, group 1 K21002 pslI; polysaccharide biosynthesis protein PslI D Pmen_4279 hypothetical protein K21003 pslJ; polysaccharide biosynthesis protein PslJ D Pmen_4277 virulence factor MVIN family protein K21004 pslK; polysaccharide biosynthesis protein PslK D Pmen_1029 type IV pilus assembly PilZ K19291 alg44; mannuronan synthase [EC:2.4.1.33] D Pmen_1675 type IV pilus assembly PilZ K19291 alg44; mannuronan synthase [EC:2.4.1.33] D Pmen_0619 response regulator receiver modulated diguanylate cyclase/phosphodiesterase K21025 fimX; multidomain signaling protein FimX D Pmen_0620 hypothetical protein K23127 fimW; cyclic-di-GMP-binding protein D Pmen_2985 type IV pilus assembly PilZ K23127 fimW; cyclic-di-GMP-binding protein C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:pmy02030] D Pmen_2000 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1701 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_3139 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_3218 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_0734 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_0782 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2174 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1353 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1210 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1567 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1571 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1998 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2154 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2974 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_3309 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_3669 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2451 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2471 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2650 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_4367 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1902 methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor D Pmen_1800 methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor D Pmen_4451 methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor D Pmen_3132 maltooligosaccharide-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein D Pmen_3830 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pmen_0686 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pmen_0841 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein D Pmen_0845 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein D Pmen_0844 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein D Pmen_4375 4-phytase K12368 dppA; dipeptide transport system substrate-binding protein D Pmen_2802 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Pmen_1568 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Pmen_2796 putative CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Pmen_2797 putative CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Pmen_1566 putative CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Pmen_2804 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Pmen_1570 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Pmen_2803 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ D Pmen_2801 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Pmen_1564 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Pmen_0171 CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Pmen_2185 putative CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Pmen_2852 putative CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Pmen_1572 CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Pmen_0170 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Pmen_1565 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Pmen_2851 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Pmen_4416 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Pmen_2824 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Pmen_2815 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Pmen_4420 surface presentation of antigens (SPOA) protein K02416 fliM; flagellar motor switch protein FliM D Pmen_4421 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Pmen_2814 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Pmen_2800 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_0192 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_0624 Flagellar motor component-like protein K02556 motA; chemotaxis protein MotA D Pmen_1299 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_2799 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_0193 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_0625 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_1300 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:pmy02040] D Pmen_2826 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Pmen_4418 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Pmen_4417 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Pmen_2825 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Pmen_4416 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Pmen_2824 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Pmen_2823 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Pmen_4415 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Pmen_2822 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Pmen_4414 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Pmen_2821 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Pmen_2817 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Pmen_0189 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Pmen_2816 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Pmen_0314 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Pmen_0190 hypothetical protein K02415 fliL; flagellar protein FliL D Pmen_2815 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Pmen_4420 surface presentation of antigens (SPOA) protein K02416 fliM; flagellar motor switch protein FliM D Pmen_4421 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Pmen_2814 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Pmen_2813 flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ D Pmen_2812 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Pmen_4422 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Pmen_4423 export protein FliQ, family 3 K02420 fliQ; flagellar biosynthesis protein FliQ D Pmen_2811 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Pmen_2810 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Pmen_4424 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Pmen_2808 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Pmen_4426 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Pmen_2809 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Pmen_4425 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Pmen_2853 SAF domain protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D Pmen_0205 SAF domain protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D Pmen_0206 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Pmen_2850 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Pmen_0207 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Pmen_2849 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Pmen_2848 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Pmen_0208 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Pmen_0209 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE D Pmen_2847 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE D Pmen_0210 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Pmen_2846 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Pmen_0211 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Pmen_2845 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Pmen_0212 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Pmen_2844 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Pmen_0213 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Pmen_2843 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Pmen_2842 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D Pmen_0215 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Pmen_2841 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Pmen_0216 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Pmen_2840 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Pmen_1393 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Pmen_2835 flagellin domain protein K02406 fliC; flagellin D Pmen_0196 flagellin domain protein K02406 fliC; flagellin D Pmen_0186 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Pmen_2833 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Pmen_2831 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Pmen_0187 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Pmen_2832 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Pmen_2830 hypothetical protein K02423 fliT; flagellar protein FliT D Pmen_2800 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_0192 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_0624 Flagellar motor component-like protein K02556 motA; chemotaxis protein MotA D Pmen_1299 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_2799 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_0193 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_0625 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_1300 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_2854 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Pmen_4412 Anti-sigma-28 factor, FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM D Pmen_2855 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D Pmen_4411 hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN D Pmen_2009 L-cystine-binding protein / Diaminopimelate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D Pmen_4028 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Pmen_2829 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Pmen_0870 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor D Pmen_2827 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Pmen_4419 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Pmen_2805 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Pmen_0191 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Pmen_3033 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:pmy04980] D Pmen_0935 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Pmen_2159 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction [PATH:pmy04626] D Pmen_2835 flagellin domain protein K02406 fliC; flagellin D Pmen_0196 flagellin domain protein K02406 fliC; flagellin D Pmen_3911 translation elongation factor Tu K02358 tuf; elongation factor Tu D Pmen_3923 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Pmen_3345 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Pmen_2491 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Pmen_0610 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pmen_0718 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:pmy01501] D Pmen_1260 outer membrane porin K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D Pmen_1097 outer membrane porin K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D Pmen_0941 hypothetical protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Pmen_1590 glycoside hydrolase, family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Pmen_2038 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D Pmen_0824 transcriptional regulator, TetR family K18135 nalD; TetR/AcrR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon D Pmen_3715 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_0825 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_1921 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_1209 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_3716 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pmen_1922 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Pmen_1208 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Pmen_0826 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pmen_3717 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Pmen_0610 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pmen_0718 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pmen_0541 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Pmen_3798 cell elongation-specific peptidoglycan D,D-transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Pmen_0916 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:pmy01502] D Pmen_0924 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pmen_0247 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Pmen_0650 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Pmen_0918 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Pmen_0919 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Pmen_0922 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:pmy01503] D Pmen_2975 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Pmen_2976 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Pmen_4542 Serralysin K01406 prtC; serralysin [EC:3.4.24.40] D Pmen_0721 Hemolysin-type calcium-binding region K01406 prtC; serralysin [EC:3.4.24.40] D Pmen_0722 Hemolysin-type calcium-binding region K01406 prtC; serralysin [EC:3.4.24.40] D Pmen_1831 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Pmen_0632 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Pmen_1471 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Pmen_0158 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Pmen_1294 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Pmen_3715 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_0825 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_1921 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_1209 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_3716 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pmen_1922 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Pmen_1208 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Pmen_0826 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pmen_0610 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pmen_0718 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pmen_3041 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:pmy01000] C 01001 Protein kinases [BR:pmy01001] D Pmen_0811 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D Pmen_2313 protein kinase K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] D Pmen_3182 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Pmen_4032 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D Pmen_4407 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Pmen_2975 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Pmen_0360 Osmolarity sensor protein envZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Pmen_3149 integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D Pmen_4119 integral membrane sensor signal transduction histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D Pmen_1173 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Pmen_2235 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Pmen_1460 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Pmen_1732 integral membrane sensor signal transduction histidine kinase K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3] D Pmen_0795 integral membrane sensor signal transduction histidine kinase K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3] D Pmen_1829 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Pmen_1950 integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D Pmen_1730 multi-sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Pmen_0084 integral membrane sensor signal transduction histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D Pmen_0278 Sensory transduction protein kinase AlgZ K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D Pmen_4143 PAS/PAC sensor signal transduction histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Pmen_0966 Sensor protein PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D Pmen_4293 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pmen_4562 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pmen_0175 Alginate biosynthesis sensor protein KinB K11383 kinB; two-component system, NtrC family, sensor histidine kinase KinB [EC:2.7.13.3] D Pmen_2802 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Pmen_1568 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Pmen_0408 CheA signal transduction histidine kinase K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D Pmen_2828 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Pmen_0847 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Pmen_1911 integral membrane sensor hybrid histidine kinase K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3] D Pmen_2468 integral membrane sensor hybrid histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D Pmen_3766 integral membrane sensor hybrid histidine kinase K20971 ladS; two-component system, sensor histidine kinase LadS D Pmen_0706 integral membrane sensor hybrid histidine kinase K20972 retS; two-component system, sensor histidine kinase RetS D Pmen_0835 multi-sensor hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:pmy01009] D Pmen_0449 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Pmen_2491 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Pmen_3183 protein phosphatase 2C domain protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] D Pmen_0618 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:pmy01002] D Pmen_0954 signal peptidase II, Aspartic peptidase, MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36] D Pmen_0773 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Pmen_3485 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Pmen_2011 glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Pmen_1082 gamma-glutamyl-gamma-aminobutyrate hydrolase K07010 K07010; putative glutamine amidotransferase D Pmen_2711 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Pmen_0550 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Pmen_4602 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Pmen_2955 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Pmen_1647 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124] D Pmen_3274 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124] D Pmen_0833 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124] D Pmen_2556 ErfK/YbiS/YcfS/YnhG family protein K16291 erfK; L,D-transpeptidase ErfK/SrfK D Pmen_2685 Abortive infection protein K07052 K07052; CAAX protease family protein D Pmen_2939 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Pmen_4461 oligopeptidase A, Metallo peptidase, MEROPS family M03A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D Pmen_4542 Serralysin K01406 prtC; serralysin [EC:3.4.24.40] D Pmen_0721 Hemolysin-type calcium-binding region K01406 prtC; serralysin [EC:3.4.24.40] D Pmen_0722 Hemolysin-type calcium-binding region K01406 prtC; serralysin [EC:3.4.24.40] D Pmen_4176 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Pmen_4177 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Pmen_3527 aminopeptidase A, Metallo peptidase, MEROPS family M17 K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Pmen_0497 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Pmen_3564 peptidase M19, renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Pmen_3066 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Pmen_3054 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Pmen_4592 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Pmen_0843 peptidase M24 K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D Pmen_0325 aminopeptidase P, Metallo peptidase, MEROPS family M24B K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Pmen_3615 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Pmen_2524 Heat shock protein, Metallo peptidase, MEROPS family M48B K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Pmen_2139 peptidase M48, Ste24p K07387 K07387; metalloprotease [EC:3.4.24.-] D Pmen_1658 peptidase M48, Ste24p K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D Pmen_3046 site-2 protease, Metallo peptidase, MEROPS family M50B K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Pmen_3828 protein of unknown function DUF980 K09933 mtfA; MtfA peptidase D Pmen_1471 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Pmen_0888 2-alkenal reductase K04691 hhoB; serine protease DegS [EC:3.4.21.-] D Pmen_4109 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Pmen_1781 oligopeptidase B, Serine peptidase, MEROPS family S09A K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D Pmen_3794 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Pmen_0066 murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D Pmen_3008 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Pmen_2050 ATP-dependent Clp protease proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Pmen_3971 peptidase S14, ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Pmen_2052 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Pmen_1223 ATP dependent PIM1 peptidase, Serine peptidase, MEROPS family S16 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Pmen_1587 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Pmen_1473 signal peptidase I, Serine peptidase, MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89] D Pmen_0513 prolyl aminopeptidase, Serine peptidase, MEROPS family S33 K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Pmen_3843 alpha/beta hydrolase fold protein K27108 ephA_B; epoxide hydrolase A/B [EC:3.3.2.-] D Pmen_1321 C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Pmen_4248 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Pmen_4240 peptidase S45, penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D Pmen_1622 signal peptide peptidase SppA, 36K type K04773 sppA; protease IV [EC:3.4.21.-] D Pmen_2530 inner membrane peptidase, Serine peptidase, MEROPS family S49 K04774 sohB; serine protease SohB [EC:3.4.21.-] D Pmen_1099 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6] D Pmen_2942 Rhomboid family protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105] D Pmen_0362 murein tetrapeptidase LD-carboxypeptidase, Serine peptidase, MEROPS family S66 K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D Pmen_0533 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D Pmen_4193 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Pmen_3832 Gamma-glutamyltransferase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126] D Pmen_4099 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Pmen_3166 peptidase U32 K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase D Pmen_0865 microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 K03592 pmbA; PmbA protein D Pmen_0863 microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 K03568 tldD; TldD protein D Pmen_3164 proteinase inhibitor I11, ecotin K08276 eco; ecotin D Pmen_0730 alpha-2-macroglobulin domain protein K06894 yfhM; alpha-2-macroglobulin D Pmen_0638 protease FtsH subunit HflC K04087 hflC; modulator of FtsH protease HflC D Pmen_0637 protease FtsH subunit HflK K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:pmy01003] D Pmen_1822 glycosyl transferase, group 1 K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-] D Pmen_2277 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21] D Pmen_4170 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Pmen_0732 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D Pmen_1002 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D Pmen_0541 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Pmen_4283 glycosyl transferase, group 1 K20999 pslF; polysaccharide biosynthesis protein PslF D Pmen_4281 glycosyl transferase, group 1 K21001 pslH; polysaccharide biosynthesis protein PslH D Pmen_4280 glycosyl transferase, group 1 K21002 pslI; polysaccharide biosynthesis protein PslI D Pmen_1030 hypothetical protein K19290 alg8; mannuronan synthase [EC:2.4.1.33] D Pmen_1676 hypothetical protein K19290 alg8; mannuronan synthase [EC:2.4.1.33] D Pmen_3235 glycosyl transferase, family 2 K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-] C 01005 Lipopolysaccharide biosynthesis proteins [BR:pmy01005] D Pmen_3041 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Pmen_3040 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Pmen_0928 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Pmen_3043 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Pmen_2574 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Pmen_1614 lipid-A-disaccharide kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Pmen_0016 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Pmen_1236 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Pmen_0611 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Pmen_1064 hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D Pmen_3034 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Pmen_1616 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Pmen_0874 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Pmen_0875 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Pmen_0580 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D Pmen_0579 lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D Pmen_0581 glycosyl transferase, group 1 K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] D Pmen_0582 lipopolysaccharide kinase K02848 waaP; lipopolysaccharide core heptose(I) kinase [EC:2.7.1.235] D Pmen_0590 glycosyl transferase, family 2 K12988 wapR; alpha-1,3-rhamnosyltransferase [EC:2.4.1.-] D Pmen_0909 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Pmen_1230 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Pmen_0012 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Pmen_0597 D-alpha,beta-D-heptose 7-phosphate 1-kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D Pmen_1875 glycosyl transferase, family 4 K13007 wbpL; glycosyltransferase WbpL [EC:2.4.1.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pmy01011] D Pmen_0882 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Pmen_1618 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Pmen_0923 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Pmen_0920 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Pmen_0917 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Pmen_0924 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pmen_0247 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Pmen_0650 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Pmen_1063 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Pmen_0362 murein tetrapeptidase LD-carboxypeptidase, Serine peptidase, MEROPS family S66 K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D Pmen_0919 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Pmen_0922 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Pmen_2175 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Pmen_0951 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Pmen_0541 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Pmen_1002 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D Pmen_0732 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D Pmen_3798 cell elongation-specific peptidoglycan D,D-transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Pmen_0916 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Pmen_3794 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Pmen_3008 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Pmen_0066 murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D Pmen_4170 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Pmen_2556 ErfK/YbiS/YcfS/YnhG family protein K16291 erfK; L,D-transpeptidase ErfK/SrfK D Pmen_1575 Lytic transglycosylase, catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Pmen_0214 Lytic transglycosylase, catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Pmen_3796 lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Pmen_3790 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Pmen_2063 Lytic transglycosylase, catalytic K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D Pmen_3415 Lytic transglycosylase, catalytic K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D Pmen_1632 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D Pmen_3795 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Pmen_0852 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Pmen_0632 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Pmen_0165 N-acetylmuramoyl-L-alanine amidase, family 2 K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Pmen_0780 N-acetylmuramoyl-L-alanine amidase, family 2 K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:pmy01004] D Pmen_1627 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Pmen_0395 beta-ketoacyl synthase K18473 fabY; acetoacetyl-[acyl-carrier protein] synthase [EC:2.3.1.180] D Pmen_2470 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Pmen_2335 3-oxoacyl-(acyl-carrier-protein) synthase-like protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Pmen_1630 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Pmen_3684 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_1628 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_0744 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_1509 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pmen_2469 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D Pmen_3042 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Pmen_2056 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Pmen_2558 Lysophospholipase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Pmen_3719 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D Pmen_0082 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D Pmen_4308 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D Pmen_0669 fatty acid desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-] D Pmen_3109 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pmen_3595 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pmen_2028 acetoacetyl-CoA synthase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D Pmen_2696 AMP-dependent synthetase and ligase K13776 atuH; citronellyl-CoA synthetase [EC:6.2.1.-] D Pmen_2970 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_1495 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_1496 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_2464 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_3562 AMP-dependent synthetase and ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D Pmen_3091 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Pmen_1626 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Pmen_4024 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Pmen_2584 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Pmen_0011 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Pmen_1770 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:pmy01008] D Pmen_2864 MbtH domain protein K05375 mbtH; MbtH protein D Pmen_3148 4'-phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] D Pmen_0804 FMN-dependent alpha-hydroxy acid dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] C 01006 Prenyltransferases [BR:pmy01006] D Pmen_3841 farnesyl-diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Pmen_3683 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Pmen_3049 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Pmen_0634 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Pmen_4409 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Pmen_0150 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:pmy01007] D Pmen_2733 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pmen_2572 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Pmen_3586 glutamyl-tRNA synthetase, class Ic K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Pmen_3927 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Pmen_1837 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Pmen_0894 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Pmen_2571 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Pmen_0535 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Pmen_1405 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Pmen_0953 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Pmen_3530 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Pmen_3786 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Pmen_3370 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Pmen_1268 aspartate--tRNA(Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Pmen_3499 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Pmen_0014 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Pmen_0013 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Pmen_2384 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Pmen_1258 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Pmen_1976 threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Pmen_2903 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Pmen_1980 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Pmen_1981 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Pmen_3114 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pmen_2522 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Pmen_2583 aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D Pmen_2738 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Pmen_3495 2-keto-4-methylthiobutyrate aminotransferase apoenzyme K14287 ybdL; methionine transaminase [EC:2.6.1.88] D Pmen_3056 aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D Pmen_0885 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pmen_1851 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pmen_4087 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Pmen_3695 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Pmen_0232 4-aminobutyrate aminotransferase apoenzyme K14268 davT; 5-aminovalerate/4-aminobutyrate aminotransferase [EC:2.6.1.48 2.6.1.19] D Pmen_2911 succinylornithine aminotransferase apoenzyme / acetylornithine aminotransferase apoenzyme K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D Pmen_2868 diaminobutyrate aminotransferase apoenzyme K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D Pmen_0343 aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113] D Pmen_2633 aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113] D Pmen_0413 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Pmen_3774 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Pmen_4524 aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Pmen_0578 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pmen_1849 phosphoserine aminotransferase apoenzyme K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Pmen_1860 DegT/DnrJ/EryC1/StrS aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:pmy00194] D Pmen_4606 ATP synthase F1 subcomplex epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Pmen_4607 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Pmen_4608 ATP synthase F1 subcomplex gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Pmen_4609 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Pmen_4610 ATP synthase F1 subcomplex delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Pmen_4611 ATP synthase F0 subcomplex B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Pmen_4612 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Pmen_4613 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Pmen_4614 ATP synthase I chain K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:pmy03000] D Pmen_4036 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pmen_4053 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D Pmen_3238 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D Pmen_1650 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D Pmen_2669 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D Pmen_3201 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D Pmen_0834 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Pmen_2641 transcriptional regulator, AraC family with amidase-like domain K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA D Pmen_0498 transcriptional regulator, AraC family with amidase-like domain K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator D Pmen_2912 transcriptional regulator, AraC family K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator D Pmen_0490 transcriptional regulator, AraC family with amidase-like domain K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D Pmen_3159 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Pmen_0256 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Pmen_1008 transcriptional regulator, LysR family K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D Pmen_1682 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D Pmen_2018 transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D Pmen_4396 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Pmen_1116 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Pmen_2546 transcriptional regulator, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D Pmen_0222 transcriptional regulator, LysR family K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D Pmen_1141 transcriptional regulator, LysR family K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D Pmen_2183 transcriptional regulator, LysR family K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator D Pmen_1157 transcriptional regulator, LysR family K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator D Pmen_2201 transcriptional regulator, LysR family K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator D Pmen_1721 transcriptional regulator, LysR family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D Pmen_0127 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D Pmen_0810 transcriptional regulator, LysR family K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D Pmen_3696 transcriptional regulator, LysR family K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D Pmen_2022 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D Pmen_4480 transcriptional regulator, LysR family K21711 pycR; LysR family transcriptional regulator, putative pyruvate carboxylase regulator D Pmen_0073 transcriptional regulator, LysR family K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator D Pmen_3347 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D Pmen_0785 transcriptional regulator, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D Pmen_2566 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D Pmen_2887 transcriptional regulator, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D Pmen_4068 transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D Pmen_3633 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Pmen_0307 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Pmen_3305 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Pmen_0204 transcriptional regulator, GntR family K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator D Pmen_0130 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Pmen_1085 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Pmen_2189 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Pmen_3443 transcriptional regulator, GntR family K23466 tgnR; GntR family transcriptional regulator, trigonelline degradation regulator D Pmen_0483 transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D Pmen_3714 transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D Pmen_2767 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator D Pmen_3699 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator D Pmen_0971 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Pmen_1101 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Pmen_2732 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Pmen_2626 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Pmen_3352 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D Pmen_0824 transcriptional regulator, TetR family K18135 nalD; TetR/AcrR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon D Pmen_0667 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D Pmen_2619 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D Pmen_2688 transcriptional regulator, TetR family K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D Pmen_0244 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pmen_2039 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pmen_3742 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pmen_3545 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pmen_4299 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D Pmen_2877 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D Pmen_3658 regulatory protein, LuxR K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D Pmen_3129 regulatory protein, LuxR K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D Pmen_2539 regulatory protein, LuxR K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D Pmen_1136 regulatory protein, LuxR K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D Pmen_0429 regulatory protein, LuxR K21748 alkS; LuxR family transcriptional regulator, alkane degradation pathway regulator D Pmen_1814 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D Pmen_2629 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Pmen_1910 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Pmen_0812 putative transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Pmen_1341 putative transcriptional regulator, MerR family K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D Pmen_3286 transcriptional regulator, MerR family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D Pmen_1072 transcriptional regulator, MerR family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D Pmen_3627 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Pmen_1932 putative ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Pmen_4496 putative ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D Pmen_4595 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D Pmen_0417 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D Pmen_3476 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D Pmen_3943 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Pmen_4353 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Pmen_1780 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Pmen_2615 putative transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Pmen_3512 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Pmen_1519 transcriptional regulator, ArsR family K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4] D Pmen_2227 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator D Pmen_4485 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D Pmen_3144 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D Pmen_3926 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Pmen_0709 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Pmen_1542 ATPase/kinase involved in NAD metabolism-like protein K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D Pmen_2829 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Pmen_2041 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Pmen_0098 transcriptional regulator, Fis family K11914 sfa2; sigma-54 dependent transcriptional regulator D Pmen_3579 transcriptional regulator, NifA subfamily, Fis Family K12266 norR; anaerobic nitric oxide reductase transcription regulator D Pmen_1437 transcriptional regulator, CdaR family K02647 cdaR; carbohydrate diacid regulator D Pmen_4091 transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein D Pmen_3568 YheO domain protein K21829 dauR; D-arginine utilization repressor D Pmen_3982 helix-turn-helix domain protein K07729 K07729; putative transcriptional regulator D Pmen_1110 L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Pmen_1692 transcriptional regulator, BolA protein family K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Pmen_4615 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Pmen_3111 transcriptional regulator, TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D Pmen_1348 putative PAS/PAC sensor protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D Pmen_1662 Glycine cleavage system regulatory protein-like protein K03567 gcvR; glycine cleavage system transcriptional repressor D Pmen_0271 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D Pmen_0398 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Pmen_3481 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein D Pmen_1159 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein D Pmen_3994 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein D Pmen_0131 negative transcriptional regulator K07734 paiB; transcriptional regulator D Pmen_0400 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator D Pmen_4537 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Pmen_3585 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Pmen_3858 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR D Pmen_1196 regulator of RNA terminal phosphate cyclase K14414 rtcR; transcriptional regulatory protein RtcR D Pmen_0913 MraZ protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:pmy03021] D Pmen_4111 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D Pmen_3884 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Pmen_3916 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Pmen_3915 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Pmen_4389 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Pmen_4028 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Pmen_3020 RNA polymerase, sigma 38 subunit, RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D Pmen_1484 RNA polymerase, sigma subunit, ECF family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Pmen_1546 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Pmen_2091 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Pmen_1467 RNA polymerase, sigma-24 subunit, RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Pmen_2699 RNA polymerase, sigma subunit, ECF family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Pmen_2673 RNA polymerase, sigma-24 subunit, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D Pmen_4172 RNA polymerase, sigma 32 subunit, RpoH K03089 rpoH; RNA polymerase sigma-32 factor D Pmen_0870 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor D Pmen_2805 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Pmen_0191 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Pmen_1485 SNF2-related protein K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D Pmen_3609 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Pmen_3853 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Pmen_3921 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG D Pmen_0906 Glutathione S-transferase, N-terminal domain protein K03599 sspA; stringent starvation protein A D Pmen_0907 Stringent starvation protein B K03600 sspB; stringent starvation protein B D Pmen_1929 response regulator receiver protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Pmen_1468 anti sigma-E protein, RseA K03597 rseA; sigma-E factor negative regulatory protein RseA D Pmen_1469 sigma E regulatory protein, MucB/RseB K03598 rseB; sigma-E factor negative regulatory protein RseB D Pmen_1470 positive regulator of sigma(E), RseC/MucC K03803 rseC; sigma-E factor negative regulatory protein RseC D Pmen_4537 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Pmen_3585 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Pmen_3619 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D Pmen_2561 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D Pmen_0309 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Pmen_1738 transcriptional antiterminator, Rof K19000 rof; Rho-binding antiterminator C 03019 Messenger RNA biogenesis [BR:pmy03019] D Pmen_1619 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D Pmen_0860 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-] D Pmen_1475 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Pmen_0643 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Pmen_0628 Exonuclease, RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-] D Pmen_3565 DEAD/DEAH box helicase domain protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D Pmen_0420 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Pmen_3728 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Pmen_2144 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Pmen_1812 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Pmen_0369 ATP-dependent DNA helicase, RecQ-like protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Pmen_3033 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Pmen_3604 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Pmen_0309 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Pmen_3624 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Pmen_3688 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pmen_0635 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Pmen_0300 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Pmen_4078 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Pmen_3590 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D Pmen_4218 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Pmen_2901 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Pmen_2087 regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A D Pmen_0867 uncharacterized P-loop ATPase protein UPF0042 K06958 rapZ; RNase adapter protein RapZ D Pmen_1511 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] D Pmen_3739 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:pmy03011] D Pmen_1854 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1 D Pmen_3053 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D Pmen_3903 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D Pmen_3885 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D Pmen_3892 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D Pmen_0645 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6 D Pmen_3913 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7 D Pmen_3895 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8 D Pmen_0902 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D Pmen_3910 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D Pmen_3886 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D Pmen_3914 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D Pmen_3887 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D Pmen_3896 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14 D Pmen_3605 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D Pmen_3401 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D Pmen_3900 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D Pmen_0646 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18 D Pmen_3905 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D Pmen_0950 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20 D Pmen_4026 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21 D Pmen_3919 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1 D Pmen_3906 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D Pmen_3909 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D Pmen_3908 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D Pmen_3897 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D Pmen_3894 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D Pmen_0648 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9 D Pmen_3918 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10 D Pmen_3920 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D Pmen_3917 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12 D Pmen_0901 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D Pmen_3899 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Pmen_3890 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D Pmen_3902 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16 D Pmen_3883 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17 D Pmen_3893 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D Pmen_3398 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19 D Pmen_1979 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D Pmen_3682 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D Pmen_3904 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D Pmen_3907 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23 D Pmen_3898 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D Pmen_3681 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27 D Pmen_4374 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28 D Pmen_3901 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29 D Pmen_3891 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D Pmen_0537 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D Pmen_1625 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32 D Pmen_4373 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33 D Pmen_4623 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34 D Pmen_1978 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35 D Pmen_3888 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36 D Pmen_1054 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25 D Pmen_R0012 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pmen_R0038 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pmen_R0078 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pmen_R0070 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pmen_R0008 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pmen_R0034 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pmen_R0074 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pmen_R0082 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pmen_R0011 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pmen_R0079 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pmen_R0037 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pmen_R0071 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:pmy03009] D Pmen_1475 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Pmen_0811 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D Pmen_0628 Exonuclease, RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-] D Pmen_1476 GTP-binding protein Era K03595 era; GTPase D Pmen_3680 GTP1/OBG sub domain protein K03979 obgE; GTPase [EC:3.6.5.-] D Pmen_4537 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Pmen_3585 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Pmen_3609 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Pmen_3853 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Pmen_3921 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG D Pmen_1355 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Pmen_4013 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Pmen_0053 16S rRNA m(5)C-967 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Pmen_3665 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D Pmen_4178 16S rRNA m(2)G-966 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Pmen_0412 16S rRNA m(3)U-1498 methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Pmen_4617 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Pmen_0914 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Pmen_0912 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Pmen_3353 protein of unknown function DUF548 K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D Pmen_3067 23S rRNA m(1)G-745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D Pmen_0644 23S rRNA Gm-2251 2'-O-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Pmen_3616 23S rRNA Um-2552 2'-O-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D Pmen_3535 23S rRNA m(6)A-1618 methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D Pmen_0751 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D Pmen_3799 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Pmen_3577 SAM-dependent methyltransferase-like protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Pmen_3598 conserved hypothetical protein 95 K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Pmen_4199 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Pmen_0569 protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D Pmen_3009 23S rRNA m(2)G-2445 methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D Pmen_1904 SAM-dependent methyltransferase-like protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D Pmen_3503 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Pmen_2155 Radical SAM domain protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Pmen_1734 23S rRNA m(5)U-1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Pmen_1232 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Pmen_1453 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Pmen_1841 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Pmen_1620 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D Pmen_0969 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Pmen_3745 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D Pmen_1707 RNA-binding S4 domain protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D Pmen_0991 [SSU ribosomal protein S18P]-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Pmen_0363 SSU ribosomal protein S6P modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D Pmen_3400 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D Pmen_1713 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D Pmen_1146 protein of unknown function DUF181 K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D Pmen_0712 [LSU ribosomal protein L11P]-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D Pmen_2739 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D Pmen_2403 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D Pmen_1619 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D Pmen_0860 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-] D Pmen_0399 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Pmen_0479 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D Pmen_2144 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Pmen_0626 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Pmen_3496 small GTP-binding protein K03977 engA; GTPase D Pmen_0636 GTP-binding protein HflX K03665 hflX; GTPase D Pmen_0058 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Pmen_2023 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Pmen_4390 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Pmen_3607 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D Pmen_3610 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP D Pmen_3800 iojap-like protein K09710 ybeB; ribosome-associated protein D Pmen_3781 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor D Pmen_3617 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein D Pmen_0864 protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein D Pmen_3010 ribosome modulation factor K03812 rmf; ribosome modulation factor D Pmen_0355 hypothetical protein K03812 rmf; ribosome modulation factor D Pmen_0869 SSU ribosomal protein S30P K05808 hpf; ribosome hibernation promoting factor D Pmen_1052 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D Pmen_1624 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:pmy03016] D Pmen_4021 polynucleotide adenylyltransferase/metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D Pmen_1193 protein of unknown function UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D Pmen_2733 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pmen_1258 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Pmen_0953 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Pmen_3786 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Pmen_1405 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Pmen_2572 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Pmen_0535 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Pmen_3370 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Pmen_1268 aspartate--tRNA(Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Pmen_2903 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Pmen_1976 threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Pmen_2384 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Pmen_2571 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Pmen_3530 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Pmen_3499 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Pmen_1980 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Pmen_1981 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Pmen_3927 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Pmen_1837 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Pmen_0894 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Pmen_0514 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Pmen_1532 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Pmen_1783 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Pmen_4166 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D Pmen_1705 protein of unknown function UPF0066 K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D Pmen_2717 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Pmen_3606 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Pmen_3025 tRNA pseudouridine synthase D, TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D Pmen_3511 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Pmen_0058 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Pmen_2023 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Pmen_0634 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Pmen_4619 tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Pmen_4618 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Pmen_2455 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Pmen_0394 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Pmen_4622 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Pmen_R0007 bacterial RNase P K01978 rnpB; M1 RNA D Pmen_1391 RNAse T K03683 rnt; ribonuclease T [EC:3.1.13.-] D Pmen_4386 RNAse PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D Pmen_1773 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D Pmen_2563 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D Pmen_0762 ABC transporter related protein K06020 ettA; energy-dependent translational throttle protein EttA D Pmen_0014 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Pmen_0013 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Pmen_3586 glutamyl-tRNA synthetase, class Ic K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Pmen_3346 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D Pmen_3731 YbaK/prolyl-tRNA synthetase associated region K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D Pmen_3110 CMP/dCMP deaminase, zinc-binding protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Pmen_3417 CMP/dCMP deaminase, zinc-binding protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Pmen_1933 tRNA-U16,U17-dihydrouridine synthase K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D Pmen_0710 tRNA-U20-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Pmen_2727 tRNA-U20a,U20b-dihydrouridine synthase K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D Pmen_3779 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Pmen_1482 putative methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D Pmen_1654 Methyltransferase type 11 K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D Pmen_1481 putative methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D Pmen_0740 Methyltransferase type 11 K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D Pmen_0831 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D Pmen_3399 tRNA (Guanine37-N(1)-) methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Pmen_3514 RNA methyltransferase, TrmH family, group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D Pmen_4242 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D Pmen_1232 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Pmen_1453 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Pmen_2399 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Pmen_2962 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D Pmen_1905 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Pmen_1659 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Pmen_2379 DsrH family protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D Pmen_2378 DsrE family protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C D Pmen_2377 DsrE family protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D Pmen_2380 DsrC family protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D Pmen_3509 iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein D Pmen_1463 GcvT-like aminomethyltransferase K06980 ygfZ; tRNA-modifying protein YgfZ D Pmen_2575 tRNA--hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69] D Pmen_3230 protein of unknown function DUF752 K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D Pmen_3521 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Pmen_1281 preQ(0) biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Pmen_1990 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Pmen_1280 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Pmen_1923 GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Pmen_0629 putative iron-sulfur cluster binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Pmen_2454 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D Pmen_3520 tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Pmen_4139 [ThiS-adenylate] sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Pmen_3036 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Pmen_3357 peptidase M22, glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Pmen_4025 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Pmen_0631 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D Pmen_3064 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D Pmen_0643 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Pmen_3604 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:pmy03012] D Pmen_0726 translation initiation factor 1 (eIF-1/SUI1) K03113 EIF1; translation initiation factor 1 D Pmen_3608 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2 D Pmen_1977 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3 D Pmen_0289 ABC transporter related protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D Pmen_3052 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D Pmen_3911 translation elongation factor Tu K02358 tuf; elongation factor Tu D Pmen_3923 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Pmen_3912 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Pmen_1060 bacterial peptide chain release factor 1 (bRF-1) K02835 prfA; peptide chain release factor 1 D Pmen_3050 ribosome recycling factor K02838 frr; ribosome recycling factor D Pmen_1061 [protein release factor]-glutamine N5-methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Pmen_1053 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Pmen_2392 bacterial translation initiation factor 1 (bIF-1) K02518 infA; translation initiation factor IF-1 D Pmen_2130 translation initiation factor 5A precursor (eIF-5A) K02356 efp; elongation factor P D Pmen_3371 bacterial peptide chain release factor 2 (bRF-2) K02836 prfB; peptide chain release factor 2 D Pmen_0792 bacterial peptide chain release factor 3 (bRF-3) K02837 prfC; peptide chain release factor 3 D Pmen_3789 protein of unknown function DUF331 K09890 arfA; alternative ribosome-rescue factor D Pmen_1309 Class I peptide chain release factor K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:pmy03110] D Pmen_2393 ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D Pmen_3639 ATPase AAA-2 domain protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D Pmen_2370 ATPase AAA-2 domain protein K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D Pmen_2051 ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Pmen_0532 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D Pmen_2491 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Pmen_3624 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Pmen_3507 Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA D Pmen_0682 Molecular chaperone-like protein K04046 yegD; hypothetical chaperone protein D Pmen_3688 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pmen_3623 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Pmen_4007 heat shock protein DnaJ domain protein K05801 djlA; DnaJ like chaperone protein D Pmen_3508 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB D Pmen_0367 Hsp33 protein K04083 hslO; molecular chaperone Hsp33 D Pmen_3625 GrpE protein K03687 GRPE; molecular chaperone GrpE D Pmen_2726 heat shock protein Hsp20 K04080 ibpA; molecular chaperone IbpA D Pmen_0365 heat shock protein Hsp15 K04762 hslR; ribosome-associated heat shock protein Hsp15 D Pmen_3687 chaperonin Cpn10 K04078 groES; chaperonin GroES D Pmen_1471 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Pmen_3615 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Pmen_4613 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Pmen_4243 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Pmen_1830 protein of unknown function, Spy-related protein K06006 cpxP; periplasmic protein CpxP/Spy D Pmen_3707 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A D Pmen_4109 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Pmen_1294 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Pmen_2573 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D Pmen_2054 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D Pmen_1314 peptidylprolyl isomerase, FKBP-type K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D Pmen_1206 peptidylprolyl isomerase, FKBP-type K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D Pmen_0286 peptidylprolyl isomerase, FKBP-type K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D Pmen_0955 peptidylprolyl isomerase, FKBP-type K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D Pmen_3642 peptidylprolyl isomerase, FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D Pmen_3171 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Pmen_2025 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Pmen_4011 PpiC-type peptidyl-prolyl cis-trans isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D Pmen_0308 thioredoxin K03671 TXN; thioredoxin D Pmen_0556 thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8] D Pmen_3861 thioredoxin K05838 ybbN; putative thioredoxin D Pmen_4244 glutaredoxin 3 K03676 grxC; glutaredoxin 3 D Pmen_3339 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D Pmen_0158 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Pmen_0284 disulfide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D Pmen_3395 Protein-disulfide isomerase-like protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D Pmen_0716 Protein-disulfide reductase K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D Pmen_2785 periplasmic protein thiol--disulfide oxidoreductase DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:pmy04131] D Pmen_3504 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Pmen_3666 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D Pmen_1594 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pmen_1311 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pmen_1451 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pmen_3261 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Pmen_2773 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Pmen_2491 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:pmy04121] C 03051 Proteasome [BR:pmy03051] D Pmen_2491 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:pmy03032] D Pmen_4263 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Pmen_2066 RNase HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Pmen_4262 hypothetical protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Pmen_4036 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pmen_4401 bacterial nucleoid protein HU alpha subunit K05787 hupA; DNA-binding protein HU-alpha D Pmen_2053 bacterial nucleoid protein HU beta subunit K03530 hupB; DNA-binding protein HU-beta D Pmen_2651 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Pmen_1982 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Pmen_1855 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Pmen_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Pmen_0649 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Pmen_4027 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Pmen_3876 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pmen_3038 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Pmen_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pmen_3528 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Pmen_3788 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Pmen_1634 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Pmen_3729 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_4544 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_2067 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_4098 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_2647 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Pmen_3039 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Pmen_0154 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Pmen_2746 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Pmen_0453 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Pmen_2993 regulatory inactivation of DnaA Hda protein K10763 hda; DnaA-homolog protein D Pmen_1848 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Pmen_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Pmen_0601 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Pmen_0604 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Pmen_1583 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Pmen_2775 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:pmy03036] D Pmen_4036 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pmen_3384 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase and related enzymes-like protein K16862 PLD6; mitochondrial cardiolipin hydrolase [EC:3.1.4.-] D Pmen_1475 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Pmen_4401 bacterial nucleoid protein HU alpha subunit K05787 hupA; DNA-binding protein HU-alpha D Pmen_2053 bacterial nucleoid protein HU beta subunit K03530 hupB; DNA-binding protein HU-beta D Pmen_2651 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Pmen_1982 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Pmen_1855 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Pmen_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Pmen_1265 Ferritin, Dps family protein K04047 dps; starvation-inducible DNA-binding protein D Pmen_0709 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Pmen_0635 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Pmen_1116 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Pmen_0244 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pmen_2039 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pmen_3742 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pmen_3545 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pmen_3549 37kDa nucleoid-associated protein K06899 ndpA; nucleoid-associated protein D Pmen_2748 condensin subunit Smc K03529 smc; chromosome segregation protein D Pmen_1838 condensin subunit ScpA K05896 scpA; segregation and condensation protein A D Pmen_1839 condensin subunit ScpB K06024 scpB; segregation and condensation protein B D Pmen_0926 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Pmen_3032 cell division protein FtsB K05589 ftsB; cell division protein FtsB D Pmen_4174 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Pmen_0916 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Pmen_2388 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Pmen_0915 cell division protein FtsL K03586 ftsL; cell division protein FtsL D Pmen_0925 Polypeptide-transport-associated domain protein, FtsQ-type K03589 ftsQ; cell division protein FtsQ D Pmen_0921 cell division-specific peptidoglycan biosynthesis regulator FtsW K03588 ftsW; cell division protein FtsW D Pmen_4173 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D Pmen_0927 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Pmen_2747 cell division protein ZipA K03528 zipA; cell division protein ZipA D Pmen_0322 cell division protein ZapA K09888 zapA; cell division protein ZapA D Pmen_0323 hypothetical protein K09892 zapB; cell division protein ZapB D Pmen_0895 AFG1-family ATPase K06916 zapE; cell division protein ZapE D Pmen_3269 AFG1-family ATPase K06916 zapE; cell division protein ZapE D Pmen_0632 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Pmen_3715 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_0825 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_1921 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_1209 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_1235 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Pmen_1234 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Pmen_1233 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Pmen_1586 SOS cell division inhibitor SulA K13053 sulA; cell division inhibitor SulA D Pmen_0856 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Pmen_0857 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D Pmen_0858 Rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D Pmen_3797 cell elongation-specific peptidoglycan biosynthesis regulator RodA K05837 rodA; rod shape determining protein RodA D Pmen_2798 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Pmen_0553 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Pmen_3433 plasmid segregation oscillating ATPase ParF K03496 parA; chromosome partitioning protein D Pmen_4616 chromosome segregation ATPase K03496 parA; chromosome partitioning protein D Pmen_4615 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Pmen_0601 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Pmen_0604 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Pmen_4618 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Pmen_4617 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Pmen_0264 tyrosine recombinase XerC subunit K03733 xerC; integrase/recombinase XerC D Pmen_3396 tyrosine recombinase XerD subunit K04763 xerD; integrase/recombinase XerD D Pmen_1406 protein of unknown function DUF59 K03593 mrp; ATP-binding protein involved in chromosome partitioning D Pmen_0155 cell division checkpoint GTPase YihA K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:pmy03400] D Pmen_1887 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Pmen_1071 deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Pmen_1381 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Pmen_3805 methylpurine-DNA glycosylase (MPG) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D Pmen_4259 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Pmen_1398 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Pmen_4111 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D Pmen_0934 8-oxo-dGTPase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Pmen_1413 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Pmen_3179 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Pmen_4378 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Pmen_0834 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Pmen_1204 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D Pmen_4147 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Pmen_1888 AlkA domain protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Pmen_0015 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Pmen_4197 Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Pmen_2436 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Pmen_4384 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Pmen_0899 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D Pmen_3376 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Pmen_2746 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Pmen_0453 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Pmen_0154 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Pmen_3878 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D Pmen_2737 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D Pmen_2374 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D Pmen_4513 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Pmen_3916 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Pmen_3915 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Pmen_3884 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Pmen_4389 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Pmen_1593 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Pmen_0633 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Pmen_3314 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D Pmen_3490 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Pmen_3840 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Pmen_3038 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Pmen_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pmen_3528 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Pmen_3788 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Pmen_1634 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Pmen_3729 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_4544 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_2067 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_4098 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pmen_2647 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Pmen_3876 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pmen_1986 DNA helicase/exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D Pmen_1985 DNA helicase/exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D Pmen_1987 DNA helicase/exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Pmen_3015 RecA protein K03553 recA; recombination protein RecA D Pmen_0425 recA protein K03553 recA; recombination protein RecA D Pmen_1271 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Pmen_1272 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Pmen_1270 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Pmen_0536 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Pmen_3538 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 D Pmen_3542 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D Pmen_0756 DNA replication and repair protein RadA K04485 radA; DNA repair protein RadA/Sms D Pmen_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Pmen_4397 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Pmen_1477 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Pmen_2645 recombination protein RecR K06187 recR; recombination protein RecR D Pmen_3626 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Pmen_1313 putative exonuclease, RdgC K03554 rdgC; recombination associated protein RdgC D Pmen_3755 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 D Pmen_3308 protein of unknown function DUF853, NPT hydrolase putative K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D Pmen_3216 Ku domain protein K10979 ku; DNA end-binding protein Ku D Pmen_3217 ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D Pmen_1848 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Pmen_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Pmen_1583 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Pmen_2775 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Pmen_4401 bacterial nucleoid protein HU alpha subunit K05787 hupA; DNA-binding protein HU-alpha D Pmen_2053 bacterial nucleoid protein HU beta subunit K03530 hupB; DNA-binding protein HU-beta D Pmen_2651 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Pmen_0709 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Pmen_1982 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Pmen_1855 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Pmen_1812 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Pmen_0369 ATP-dependent DNA helicase, RecQ-like protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Pmen_1726 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Pmen_1587 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Pmen_3572 DNA damage-inducible DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D Pmen_1936 hypothetical protein K14160 imuA; protein ImuA D Pmen_1935 Nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein K14161 imuB; protein ImuB D Pmen_1934 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D Pmen_3014 regulatory protein RecX K03565 recX; regulatory protein D Pmen_0253 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D Pmen_1427 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Pmen_2194 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Pmen_3426 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Pmen_3151 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pmen_3152 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:pmy03029] D Pmen_0904 Cytochrome b/b6, N-terminal domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Pmen_3608 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2 D Pmen_1977 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3 D Pmen_3052 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D Pmen_3911 translation elongation factor Tu K02358 tuf; elongation factor Tu D Pmen_3923 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Pmen_3912 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Pmen_1476 GTP-binding protein Era K03595 era; GTPase D Pmen_3927 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Pmen_3786 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Pmen_1268 aspartate--tRNA(Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Pmen_0535 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Pmen_0854 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Pmen_0853 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Pmen_0855 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Pmen_3876 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pmen_3045 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family D Pmen_3624 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Pmen_3625 GrpE protein K03687 GRPE; molecular chaperone GrpE D Pmen_3688 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pmen_3687 chaperonin Cpn10 K04078 groES; chaperonin GroES D Pmen_3623 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Pmen_3511 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Pmen_3508 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB D Pmen_3339 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D Pmen_1406 protein of unknown function DUF59 K03593 mrp; ATP-binding protein involved in chromosome partitioning D Pmen_0150 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Pmen_0144 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D Pmen_0149 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Pmen_4620 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Pmen_0147 conserved hypothetical protein K14998 SURF1; surfeit locus 1 family protein D Pmen_0151 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D Pmen_3384 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase and related enzymes-like protein K16862 PLD6; mitochondrial cardiolipin hydrolase [EC:3.1.4.-] D Pmen_2491 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:pmy02000] D Pmen_0594 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Pmen_1307 ABC transporter related protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D Pmen_2343 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Pmen_2515 lipid A ABC exporter family, fused ATPase and inner membrane subunits K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Pmen_2203 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Pmen_1803 ABC transporter related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Pmen_0720 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D Pmen_1695 ABC transporter related protein K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial D Pmen_2872 cyclic peptide transporter K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein D Pmen_1576 ABC transporter related protein K15738 uup; ABC transport system ATP-binding/permease protein D Pmen_4318 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D Pmen_4345 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D Pmen_4317 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Pmen_4346 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Pmen_4316 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Pmen_4347 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Pmen_4348 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Pmen_4339 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Pmen_4340 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Pmen_4341 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Pmen_2105 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D Pmen_2104 nitrate ABC transporter, inner membrane subunit K15577 nrtB; nitrate/nitrite transport system permease protein D Pmen_2103 nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D Pmen_4331 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pmen_4323 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pmen_4333 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pmen_4321 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pmen_4330 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pmen_4320 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pmen_4329 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pmen_0330 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Pmen_3343 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Pmen_0344 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Pmen_0346 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Pmen_0124 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Pmen_0340 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Pmen_0345 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Pmen_4052 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Pmen_0349 Ornithine carbamoyltransferase K11074 potI; putrescine transport system permease protein D Pmen_0348 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein D Pmen_0347 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D Pmen_1332 ABC-type Fe3+ transport system periplasmic component-like protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pmen_3447 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pmen_4002 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pmen_4201 Spermidine/putrescine-binding periplasmic protein-like protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pmen_1329 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pmen_3449 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pmen_4000 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pmen_4203 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pmen_3448 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pmen_1330 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pmen_4001 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pmen_4202 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pmen_1328 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pmen_3450 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pmen_4003 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pmen_4200 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pmen_0499 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pmen_0484 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pmen_0485 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pmen_0063 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pmen_0488 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pmen_0486 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Pmen_0487 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Pmen_3115 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein D Pmen_3116 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein D Pmen_3118 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein D Pmen_3117 ABC transporter related protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D Pmen_1366 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Pmen_1361 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Pmen_1365 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Pmen_1364 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Pmen_3132 maltooligosaccharide-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein D Pmen_3131 maltooligosaccharide ABC transporter membrane protein K10109 malF; maltose/maltodextrin transport system permease protein D Pmen_3130 maltooligosaccharide ABC transporter membrane protein K10110 malG; maltose/maltodextrin transport system permease protein D Pmen_3127 maltooligosaccharide ABC transporter ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pmen_4471 sorbitol ABC transporter ATP-binding protein / mannitol ABC transporter ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pmen_1153 glucose ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pmen_1150 glucose-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein D Pmen_1151 glucose ABC transporter membrane protein K17316 gtsB; glucose/mannose transport system permease protein D Pmen_1152 glucose ABC transporter membrane protein K17317 gtsC; glucose/mannose transport system permease protein D Pmen_3830 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pmen_0686 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pmen_2047 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17321 glpV; glycerol transport system substrate-binding protein D Pmen_2044 carbohydrate ABC transporter membrane protein 1, CUT1 family K17322 glpP; glycerol transport system permease protein D Pmen_2045 carbohydrate ABC transporter membrane protein 2, CUT1 family K17323 glpQ; glycerol transport system permease protein D Pmen_2042 carbohydrate ABC transporter ATP-binding protein, CUT1 family K17324 glpS; glycerol transport system ATP-binding protein D Pmen_2043 carbohydrate ABC transporter ATP-binding protein, CUT1 family K17325 glpT; glycerol transport system ATP-binding protein D Pmen_4468 sorbitol-binding protein / mannitol-binding protein K10227 smoE; polyol transport system substrate-binding protein D Pmen_4469 sorbitol ABC transporter membrane protein / mannitol ABC transporter membrane protein K10228 smoF; polyol transport system permease protein D Pmen_4470 mannitol ABC transporter membrane protein / sorbitol ABC transporter membrane protein K10229 smoG; polyol transport system permease protein D Pmen_0878 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Pmen_0371 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Pmen_0373 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Pmen_0877 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Pmen_0876 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Pmen_0372 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Pmen_0370 protein of unknown function DUF330 K18480 linN; cholesterol transport system auxiliary component D Pmen_0879 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Pmen_0880 anti-sigma-factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein D Pmen_2437 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Pmen_0179 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Pmen_4077 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Pmen_0180 binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein D Pmen_0181 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Pmen_0182 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Pmen_3197 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D Pmen_2889 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D Pmen_2888 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Pmen_3199 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Pmen_3200 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Pmen_3198 ABC transporter related protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Pmen_2890 phosphonate ABC transporter, ATPase subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Pmen_3560 amino acid ABC transporter substrate-binding protein, PAAT family K09969 aapJ; general L-amino acid transport system substrate-binding protein D Pmen_3559 amino acid ABC transporter membrane protein 1, PAAT family K09970 aapQ; general L-amino acid transport system permease protein D Pmen_3558 amino acid ABC transporter membrane protein 2, PAAT family K09971 aapM; general L-amino acid transport system permease protein D Pmen_3557 amino acid ABC transporter ATP-binding protein, PAAT family K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D Pmen_2009 L-cystine-binding protein / Diaminopimelate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D Pmen_2008 Diaminopimelate ABC transporter membrane protein / L-cystine ABC transporter membrane protein K10009 tcyB; L-cystine transport system permease protein D Pmen_2007 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D Pmen_2916 L-arginine-binding protein / L-ornithine-binding protein K10022 aotJ; arginine/ornithine transport system substrate-binding protein D Pmen_3578 L-ornithine-binding protein / L-arginine-binding protein K10022 aotJ; arginine/ornithine transport system substrate-binding protein D Pmen_1094 L-ornithine-binding protein / L-arginine-binding protein K10022 aotJ; arginine/ornithine transport system substrate-binding protein D Pmen_1098 amino acid ABC transporter substrate-binding protein, PAAT family K10022 aotJ; arginine/ornithine transport system substrate-binding protein D Pmen_2914 L-arginine ABC transporter membrane protein / L-ornithine ABC transporter membrane protein K10023 aotM; arginine/ornithine transport system permease protein D Pmen_1092 L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein K10023 aotM; arginine/ornithine transport system permease protein D Pmen_2915 L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein K10024 aotQ; arginine/ornithine transport system permease protein D Pmen_1093 L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein K10024 aotQ; arginine/ornithine transport system permease protein D Pmen_2913 L-ornithine ABC transporter ATP-binding protein / L-arginine ABC transporter ATP-binding protein K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1] D Pmen_1090 L-ornithine ABC transporter ATP-binding protein / L-arginine ABC transporter ATP-binding protein K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1] D Pmen_1387 L-valine-binding protein / L-isoleucine-binding protein / L-leucine-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pmen_4596 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pmen_3837 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pmen_1376 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pmen_1386 L-leucine ABC transporter membrane protein / L-valine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein K01997 livH; branched-chain amino acid transport system permease protein D Pmen_3836 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pmen_3835 monosaccharide ABC transporter ATP-binding protein, CUT2 family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pmen_1385 L-leucine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein / L-valine ABC transporter membrane protein K01998 livM; branched-chain amino acid transport system permease protein D Pmen_1384 L-isoleucine ABC transporter ATP-binding protein / L-valine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pmen_1383 L-leucine ABC transporter ATP-binding protein / L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pmen_2364 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D Pmen_4505 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D Pmen_4504 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Pmen_2366 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Pmen_2365 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein D Pmen_4503 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein D Pmen_0701 amino acid/amide ABC transporter substrate-binding protein, HAAT family K11959 urtA; urea transport system substrate-binding protein D Pmen_0700 amino acid/amide ABC transporter membrane protein 1, HAAT family K11960 urtB; urea transport system permease protein D Pmen_0699 amino acid/amide ABC transporter membrane protein 2, HAAT family K11961 urtC; urea transport system permease protein D Pmen_0698 ABC transporter related protein K11962 urtD; urea transport system ATP-binding protein D Pmen_0697 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K11963 urtE; urea transport system ATP-binding protein D Pmen_4270 amino acid ABC transporter substrate-binding protein, PAAT family K23055 K23055; putative lysine/arginine/ornithine/histidine/octopine transport system substrate-binding protein D Pmen_4271 amino acid ABC transporter membrane protein 1, PAAT family K23056 K23056; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein D Pmen_4272 amino acid ABC transporter membrane protein 2, PAAT family K23057 K23057; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein D Pmen_4269 amino acid ABC transporter ATP-binding protein, PAAT family K23058 K23058; putative lysine/arginine/ornithine/histidine/octopine transport system ATP-binding protein [EC:7.4.2.1] D Pmen_1461 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_0306 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_3255 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_0421 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_0477 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_3063 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_4441 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_0687 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_1543 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_1080 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_3737 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_4251 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_4249 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_4250 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_2704 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_1316 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_0117 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_2027 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_0733 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_3522 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_3850 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_3734 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_3190 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_1959 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pmen_0304 amino acid ABC transporter membrane protein 2, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Pmen_0305 amino acid ABC transporter membrane protein 1, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Pmen_0303 amino acid ABC transporter ATP-binding protein, PAAT family K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Pmen_0841 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein D Pmen_0845 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein D Pmen_0844 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein D Pmen_4375 4-phytase K12368 dppA; dipeptide transport system substrate-binding protein D Pmen_0840 Alkaline phosphatase K12369 dppB; dipeptide transport system permease protein D Pmen_0839 binding-protein-dependent transport systems inner membrane component K12370 dppC; dipeptide transport system permease protein D Pmen_0838 oligopeptide/dipeptide ABC transporter, ATPase subunit K12371 dppD; dipeptide transport system ATP-binding protein D Pmen_0837 oligopeptide/dipeptide ABC transporter, ATPase subunit K12372 dppF; dipeptide transport system ATP-binding protein D Pmen_2060 extracellular solute-binding protein, family 5 K13893 yejA; microcin C transport system substrate-binding protein D Pmen_2061 extracellular solute-binding protein, family 5 K13893 yejA; microcin C transport system substrate-binding protein D Pmen_2059 binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein D Pmen_2058 binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein D Pmen_2057 ABC transporter related protein K13896 yejF; microcin C transport system ATP-binding protein D Pmen_2865 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D Pmen_3767 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D Pmen_3768 transport system permease protein K23228 fhuB; ferric hydroxamate transport system permease protein D Pmen_2866 transport system permease protein K23228 fhuB; ferric hydroxamate transport system permease protein D Pmen_3769 ABC transporter related protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D Pmen_2860 ABC transporter related protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D Pmen_0993 periplasmic binding protein K25132 hmuT; heme transport system substrate-binding protein D Pmen_0994 transport system permease protein K25133 hmuU; heme transport system permease protein D Pmen_0995 ABC transporter related protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D Pmen_4565 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pmen_0797 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pmen_0798 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Pmen_4564 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Pmen_4566 ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Pmen_0799 ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Pmen_3846 periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein D Pmen_4495 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein D Pmen_4498 ABC-3 protein K09816 znuB; zinc transport system permease protein D Pmen_4497 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Pmen_3526 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Pmen_3525 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Pmen_0871 ABC transporter related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Pmen_3072 hypothetical protein K25151 gldF; gliding motility-associated transport system permease protein D Pmen_3073 ABC transporter related protein K25152 gldA; gliding motility-associated transport system ATP-binding protein D Pmen_3071 ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like protein K25153 gldG; gliding motility-associatede transport system auxiliary component D Pmen_1607 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Pmen_1609 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Pmen_1608 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Pmen_2788 Heme exporter protein D (CcmD) K02196 ccmD; heme exporter protein D D Pmen_2789 heme exporter protein CcmC K02195 ccmC; heme exporter protein C D Pmen_2790 heme exporter protein CcmB K02194 ccmB; heme exporter protein B D Pmen_2791 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Pmen_4173 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D Pmen_4174 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Pmen_1221 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Pmen_1920 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Pmen_1945 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Pmen_0315 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Pmen_1220 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Pmen_1919 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Pmen_1946 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Pmen_3865 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Pmen_2311 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Pmen_2560 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Pmen_3864 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Pmen_2312 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Pmen_2559 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Pmen_4465 Bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D Pmen_2781 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Pmen_4075 Na+/Pi-cotransporter K14683 SLC34A; solute carrier family 34 (sodium-dependent phosphate cotransporter) D Pmen_0255 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Pmen_1907 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Pmen_0729 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Pmen_4580 major facilitator superfamily MFS_1 K03762 proP; MFS transporter, MHS family, proline/betaine transporter D Pmen_1217 d-galactonate transporter K03535 gudP; MFS transporter, ACS family, glucarate transporter D Pmen_1497 major facilitator superfamily MFS_1 K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D Pmen_1245 major facilitator superfamily MFS_1 K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D Pmen_1883 major facilitator superfamily MFS_1 K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D Pmen_1523 major facilitator superfamily MFS_1 K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter D Pmen_2098 nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Pmen_0941 hypothetical protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Pmen_0827 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Pmen_1103 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Pmen_1505 major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D Pmen_1527 major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D Pmen_2736 drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D Pmen_3210 major facilitator superfamily MFS_1 K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D Pmen_2978 major facilitator superfamily MFS_1 K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D Pmen_4217 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D Pmen_0866 Phosphotransferase system, phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr D Pmen_0786 PTS system D-fructose-specific IIA component (F1P-forming), Frc family / Phosphocarrier protein HPr K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D Pmen_0788 PTS system D-fructose-specific IIC component (F1P-forming), Frc family / PTS system D-fructose-specific IIB component (F1P-forming), Frc family K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Pmen_0868 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D Pmen_2780 Ion transport protein K10716 kch; voltage-gated potassium channel D Pmen_2617 Ion transport protein K08714 VGSC; voltage-gated sodium channel D Pmen_0260 ammonium transporter K03320 amt; ammonium transporter, Amt family D Pmen_2999 ammonium transporter K03320 amt; ammonium transporter, Amt family D Pmen_3462 ammonium transporter K03320 amt; ammonium transporter, Amt family D Pmen_3224 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pmen_2670 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pmen_0933 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pmen_1914 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pmen_0906 Glutathione S-transferase, N-terminal domain protein K03599 sspA; stringent starvation protein A D Pmen_2932 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog D Pmen_2933 TPR repeat-containing protein K07114 yfbK; Ca-activated chloride channel homolog D Pmen_2700 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog D Pmen_2376 protein of unknown function UPF0005 K19416 yccA; modulator of FtsH protease D Pmen_0559 MscS Mechanosensitive ion channel K05802 mscK; potassium-dependent mechanosensitive channel D Pmen_0940 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Pmen_1305 MscS Mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel D Pmen_2899 magnesium transporter K06213 mgtE; magnesium transporter D Pmen_2187 magnesium transporter K06213 mgtE; magnesium transporter D Pmen_2774 Urea transporter K08717 utp; urea transporter D Pmen_2800 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_0192 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_0624 Flagellar motor component-like protein K02556 motA; chemotaxis protein MotA D Pmen_1299 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_2799 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_0193 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_0625 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_1300 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_1393 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Pmen_1612 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Pmen_3870 outer membrane transport energization protein ExbB K03561 exbB; biopolymer transport protein ExbB D Pmen_3871 outer membrane transport energization protein ExbB K03561 exbB; biopolymer transport protein ExbB D Pmen_1613 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Pmen_3869 outer membrane transport energization protein ExbD K03559 exbD; biopolymer transport protein ExbD D Pmen_1274 Cell division and transport-associated protein TolQ K03562 tolQ; biopolymer transport protein TolQ D Pmen_4062 Cell division and transport-associated protein TolQ K03562 tolQ; biopolymer transport protein TolQ D Pmen_1275 Cell division and transport-associated protein TolR K03560 tolR; biopolymer transport protein TolR D Pmen_4061 Cell division and transport-associated protein TolR K03560 tolR; biopolymer transport protein TolR D Pmen_2088 Mg2+ transporter protein, CorA family protein K16074 zntB; zinc transporter D Pmen_2385 camphor resistance protein CrcB K06199 crcB; fluoride exporter D Pmen_4406 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Pmen_3404 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Pmen_1154 porin, LamB type K02024 lamB; maltoporin D Pmen_3137 porin, LamB type K02024 lamB; maltoporin D Pmen_1166 phosphate-selective porin O and P K07221 oprO_P; phosphate-selective porin OprO and OprP D Pmen_1248 phosphate-selective porin O and P K07221 oprO_P; phosphate-selective porin OprO and OprP D Pmen_2092 OmpF family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Pmen_1767 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein D Pmen_1288 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein D Pmen_1027 alginate export porin K16081 algE; alginate production protein D Pmen_1673 alginate export porin K16081 algE; alginate production protein D Pmen_0805 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor D Pmen_0802 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor D Pmen_3231 TonB-dependent siderophore receptor K16091 fecA; Fe(3+) dicitrate transport protein D Pmen_3845 TonB-dependent receptor, plug K16092 btuB; vitamin B12 transporter D Pmen_4556 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D Pmen_0806 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D Pmen_0796 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D Pmen_4510 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D Pmen_0887 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pmen_4567 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pmen_4581 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pmen_3709 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pmen_2570 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pmen_2675 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pmen_4103 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pmen_2867 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pmen_1175 outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system D Pmen_2210 outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system D Pmen_0610 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pmen_0718 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pmen_1804 type I secretion outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system D Pmen_2179 RND efflux system, outer membrane lipoprotein, NodT family K18300 oprN; outer membrane protein, multidrug efflux system D Pmen_3717 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Pmen_2776 RND efflux system, outer membrane lipoprotein, NodT family K18904 nodT; outer membrane protein, multidrug efflux system D Pmen_4285 polysaccharide export protein K20987 pslD; polysaccharide biosynthesis/export protein PslD D Pmen_1260 outer membrane porin K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D Pmen_1097 outer membrane porin K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D Pmen_3045 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family D Pmen_3497 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB D Pmen_1664 Uncharacterized lipoprotein-like protein K07287 bamC; outer membrane protein assembly factor BamC D Pmen_0968 DNA uptake lipoprotein-like protein K05807 bamD; outer membrane protein assembly factor BamD D Pmen_3628 SmpA/OmlA domain protein K06186 bamE; outer membrane protein assembly factor BamE D Pmen_2434 surface antigen (D15) K07278 tamA; translocation and assembly module TamA D Pmen_2433 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB D Pmen_0872 OstA family protein K09774 lptA; lipopolysaccharide export system protein LptA D Pmen_0873 protein of unknown function DUF1239 K11719 lptC; lipopolysaccharide export system protein LptC D Pmen_4010 Organic solvent tolerance protein K04744 lptD; LPS-assembly protein D Pmen_3787 Rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein D Pmen_3782 CBS domain containing protein K06189 corC; hemolysin (HlyC) family protein D Pmen_3809 LrgA family protein K06518 cidA; holin-like protein D Pmen_3254 putrescine:ornithine antiporter, APA family K03756 potE; putrescine:ornithine antiporter D Pmen_1109 arginine:ornithine antiporter, APA family K03758 arcD; arginine:ornithine antiporter / lysine permease D Pmen_2660 arginine:ornithine antiporter, APA family K03758 arcD; arginine:ornithine antiporter / lysine permease D Pmen_3546 amino acid exporter, AAE family K16263 yjeH; amino acid efflux transporter D Pmen_3741 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF D Pmen_1177 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Pmen_2212 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein D Pmen_2180 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18299 mexF; multidrug efflux pump D Pmen_3350 acriflavin resistance protein K18303 mexK; multidrug efflux pump D Pmen_3716 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pmen_1922 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Pmen_1208 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Pmen_0826 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pmen_1679 acriflavin resistance protein K18989 vexF; multidrug efflux pump D Pmen_2430 acriflavin resistance protein K07788 mdtB; multidrug efflux pump D Pmen_2429 acriflavin resistance protein K07789 mdtC; multidrug efflux pump D Pmen_0613 small multidrug resistance protein K03297 emrE; small multidrug resistance pump D Pmen_3464 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE D Pmen_3146 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE D Pmen_3173 protein of unknown function DUF6, transmembrane K15268 eamA; O-acetylserine/cysteine efflux transporter D Pmen_2514 protein of unknown function DUF6, transmembrane K11939 rhtA; inner membrane transporter RhtA D Pmen_4093 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD D Pmen_1302 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD D Pmen_0736 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Pmen_1247 protein of unknown function UPF0060 K09771 TC.SMR3; small multidrug resistance family-3 protein D Pmen_1999 Na+/H+ antiporter NhaC K07084 yuiF; putative amino acid transporter D Pmen_1438 predicted D-glycerate permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family D Pmen_3634 L-lactate transport K03303 lutP; lactate permease D Pmen_0198 L-lactate permease K03303 lutP; lactate permease D Pmen_4404 Choline-glycine betaine transporter-like protein K05020 opuD; glycine betaine transporter D Pmen_3436 choline/carnitine/betaine transporter K02168 betT; choline/glycine/proline betaine transport protein D Pmen_0851 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter D Pmen_1250 sodium/proline symporter K11928 putP; sodium/proline symporter D Pmen_4101 Na+/solute symporter K14393 actP; cation/acetate symporter D Pmen_2859 sodium:dicarboxylate symporter K07862 sstT; serine/threonine transporter D Pmen_3531 transporter, NhaC family K03315 nhaC; Na+:H+ antiporter, NhaC family D Pmen_3882 transporter, NhaC family K18218 tet35; tetracycline resistance efflux pump D Pmen_2356 sodium/proton antiporter, CPA1 family K24160 NHA1; sodium/hydrogen antiporter D Pmen_0560 potassium/proton antiporter, CPA1 family K11105 cvrA; potassium/hydrogen antiporter D Pmen_2368 Kef-type potassium/proton antiporter, CPA2 family K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D Pmen_3573 H(+)-transporting two-sector ATPase K03498 trkH; trk/ktr system potassium uptake protein D Pmen_1826 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D Pmen_0052 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Pmen_3574 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Pmen_0945 uracil-xanthine permease K02824 uraA; uracil permease D Pmen_0163 uracil-xanthine permease K24206 uacT; uric acid transporter D Pmen_3698 uracil-xanthine permease K16345 xanP; xanthine permease XanP D Pmen_2762 uracil-xanthine permease K16345 xanP; xanthine permease XanP D Pmen_2756 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Pmen_4444 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Pmen_0832 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Pmen_2678 benzoate transporter K05782 benE; benzoate membrane transport protein D Pmen_2228 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter D Pmen_2247 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter D Pmen_4327 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter D Pmen_0948 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family D Pmen_0062 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Pmen_4295 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP D Pmen_0218 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP D Pmen_2426 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP D Pmen_4296 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Pmen_4297 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Pmen_4044 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Pmen_2568 TRAP dicarboxylate transporter, DctM subunit K21393 yiaN; TRAP-type transport system large permease protein D Pmen_4045 Tripartite ATP-independent periplasmic transporter, DctQ component K21394 yiaM; TRAP-type transport system small permease protein D Pmen_2569 carbohydrate kinase, thermoresistant glucokinase family K00851 idnK; gluconokinase [EC:2.7.1.12] D Pmen_2567 TRAP dicarboxylate transporter, DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D Pmen_4046 TRAP dicarboxylate transporter, DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D Pmen_4443 sodium-dependent inorganic phosphate (Pi) transporter K03324 yjbB; phosphate:Na+ symporter D Pmen_4194 Na+/Pi-cotransporter K03324 yjbB; phosphate:Na+ symporter D Pmen_1518 arsenical-resistance protein K03325 ACR3; arsenite transporter D Pmen_1441 multisubunit potassium/proton antiporter, PhaB subunit / multisubunit potassium/proton antiporter, PhaA subunit K05559 phaA; multicomponent K+:H+ antiporter subunit A D Pmen_1442 multisubunit potassium/proton antiporter, PhaC subunit K05560 phaC; multicomponent K+:H+ antiporter subunit C D Pmen_1443 multisubunit potassium/proton antiporter, PhaD subunit K05561 phaD; multicomponent K+:H+ antiporter subunit D D Pmen_1444 multisubunit potassium/proton antiporter, PhaE subunit K05562 phaE; multicomponent K+:H+ antiporter subunit E D Pmen_1445 multisubunit potassium/proton antiporter, PhaF subunit K05563 phaF; multicomponent K+:H+ antiporter subunit F D Pmen_1446 multisubunit potassium/proton antiporter, PhaG subunit K05564 phaG; multicomponent K+:H+ antiporter subunit G D Pmen_1433 multisubunit sodium/proton antiporter, MrpA subunit K05565 mnhA; multicomponent Na+:H+ antiporter subunit A D Pmen_1432 multisubunit sodium/proton antiporter, MrpC subunit K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D Pmen_1431 multisubunit sodium/proton antiporter, MrpD subunit K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D Pmen_1430 multisubunit sodium/proton antiporter, MrpE subunit K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D Pmen_1429 multiple resistance and pH regulation protein F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D Pmen_1428 multisubunit sodium/proton antiporter, MrpG subunit K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D Pmen_0951 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Pmen_0140 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins D Pmen_0671 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins D Pmen_4440 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins D Pmen_0849 Auxin Efflux Carrier K24180 mleP; malate permease and related proteins D Pmen_1114 Lysine exporter protein (LYSE/YGGA) K06895 lysE; L-lysine exporter family protein LysE/ArgO D Pmen_0291 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein D Pmen_4576 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein D Pmen_4393 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein D Pmen_2461 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein D Pmen_3663 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein D Pmen_4604 Lysine exporter protein (LYSE/YGGA) K11250 leuE; leucine efflux protein D Pmen_0661 Lysine exporter protein (LYSE/YGGA) K06600 chpE; chemosensory pili system protein ChpE D Pmen_3295 AzlC family protein K26605 azlC; branched chain amino acid efflux pump D Pmen_3294 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump D Pmen_1211 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Pmen_1455 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Pmen_1456 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Pmen_1212 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Pmen_1457 Uncharacterized protein UPF0065 K07795 tctC; putative tricarboxylic transport membrane protein D Pmen_1213 Uncharacterized protein UPF0065 K07795 tctC; putative tricarboxylic transport membrane protein D Pmen_1660 protein of unknown function UPF0118 K03548 perM; putative permease D Pmen_0050 conserved hypothetical integral membrane protein K09125 yhhQ; queuosine precursor transporter D Pmen_0705 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein D Pmen_0921 cell division-specific peptidoglycan biosynthesis regulator FtsW K03588 ftsW; cell division protein FtsW D Pmen_3666 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D Pmen_0292 iron permease FTR1 K07243 FTR; high-affinity iron transporter D Pmen_2243 high-affinity nickel-transporter K08970 rcnA; nickel/cobalt transporter (NicO) family protein D Pmen_3868 outer membrane transport energization protein TonB K03832 tonB; periplasmic protein TonB D Pmen_0401 TonB family protein K03832 tonB; periplasmic protein TonB D Pmen_1278 OmpA domain protein K03640 pal; peptidoglycan-associated lipoprotein D Pmen_1276 Cell division and transport-associated protein TolA K03646 tolA; colicin import membrane protein D Pmen_1277 TolB, N-terminal domain protein K03641 tolB; TolB protein D Pmen_2892 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Pmen_2893 oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Pmen_2894 sodium pump decarboxylase, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D Pmen_2735 secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system D Pmen_0719 type I secretion membrane fusion protein, HlyD family K12537 hasE; membrane fusion protein, type I secretion system D Pmen_1176 efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D Pmen_2211 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Pmen_1802 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D Pmen_2181 efflux transporter, RND family, MFP subunit K18298 mexE; membrane fusion protein, multidrug efflux system D Pmen_3351 efflux transporter, RND family, MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system D Pmen_2778 efflux transporter, RND family, MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system D Pmen_3715 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_0825 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_1921 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_1209 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_1680 efflux transporter, RND family, MFP subunit K18990 vexE; membrane fusion protein, multidrug efflux system D Pmen_2431 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D Pmen_1541 nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter D Pmen_2172 nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter D Pmen_2786 cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D Pmen_2296 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D Pmen_2757 Transthyretin K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] C 02044 Secretion system [BR:pmy02044] D Pmen_0610 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pmen_0718 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pmen_0720 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D Pmen_0719 type I secretion membrane fusion protein, HlyD family K12537 hasE; membrane fusion protein, type I secretion system D Pmen_1803 ABC transporter related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Pmen_1802 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D Pmen_1804 type I secretion outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system D Pmen_4163 hypothetical protein K02452 gspC; general secretion pathway protein C D Pmen_2926 hypothetical protein K02452 gspC; general secretion pathway protein C D Pmen_4160 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D Pmen_2927 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D Pmen_2925 type II secretion system protein E (GspE) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Pmen_4301 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Pmen_2924 general secretion pathway protein F K02455 gspF; general secretion pathway protein F D Pmen_0688 type II secretion system protein K02455 gspF; general secretion pathway protein F D Pmen_2923 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D Pmen_2922 general secretion pathway protein H K02457 gspH; general secretion pathway protein H D Pmen_2921 general secretion pathway protein I K02458 gspI; general secretion pathway protein I D Pmen_2920 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D Pmen_2919 General secretion pathway protein K K02460 gspK; general secretion pathway protein K D Pmen_2918 general secretion pathway protein L K02461 gspL; general secretion pathway protein L D Pmen_2917 General secretion pathway M protein K02462 gspM; general secretion pathway protein M D Pmen_0773 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Pmen_0777 Fimbrial protein pilin K02650 pilA; type IV pilus assembly protein PilA D Pmen_0775 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D Pmen_0774 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Pmen_0957 Tfp pilus assembly protein PilE-like protein K02655 pilE; type IV pilus assembly protein PilE D Pmen_3502 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D Pmen_0403 response regulator receiver protein K02657 pilG; twitching motility two-component system response regulator PilG D Pmen_0404 response regulator receiver protein K02658 pilH; twitching motility two-component system response regulator PilH D Pmen_0405 putative CheW protein K02659 pilI; twitching motility protein PilI D Pmen_0406 methyl-accepting chemotaxis sensory transducer K02660 pilJ; twitching motility protein PilJ D Pmen_0407 Protein-glutamate O-methyltransferase K02661 pilK; type IV pilus assembly protein PilK D Pmen_0542 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Pmen_0543 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Pmen_0544 Pilus assembly protein, PilO K02664 pilO; type IV pilus assembly protein PilO D Pmen_0545 Pilus assembly protein, PilQ K02665 pilP; type IV pilus assembly protein PilP D Pmen_0546 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ D Pmen_4149 pilus retraction ATPase PilT K02669 pilT; twitching motility protein PilT D Pmen_4148 twitching motility protein K02670 pilU; twitching motility protein PilU D Pmen_2026 twitching motility protein K02670 pilU; twitching motility protein PilU D Pmen_4442 twitching motility protein K02670 pilU; twitching motility protein PilU D Pmen_0961 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D Pmen_0960 Tfp pilus assembly protein PilW-like protein K02672 pilW; type IV pilus assembly protein PilW D Pmen_0959 Tfp pilus assembly protein PilX-like protein K02673 pilX; type IV pilus assembly protein PilX D Pmen_0958 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein K02674 pilY1; type IV pilus assembly protein PilY1 D Pmen_1635 type IV pilus assembly PilZ K02676 pilZ; type IV pilus assembly protein PilZ D Pmen_2070 hypothetical protein K27041 fimL; scaffold protein FimL D Pmen_0963 Tfp pilus assembly protein FimT-like protein K08084 fimT; type IV fimbrial biogenesis protein FimT D Pmen_0962 Tfp pilus assembly protein FimT-like protein K08085 fimU; type IV fimbrial biogenesis protein FimU D Pmen_2718 Tfp pilus assembly protein FimV-like protein K08086 fimV; pilus assembly protein FimV D Pmen_1815 Peptidoglycan-binding LysM K08086 fimV; pilus assembly protein FimV D Pmen_4152 protein of unknown function YGGT K02221 yggT; YggT family protein D Pmen_1879 competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA D Pmen_1984 competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA D Pmen_1611 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D Pmen_0023 type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C D Pmen_0040 type III secretion apparatus protein, YscD/HrpQ family K03220 yscD; type III secretion protein D D Pmen_0028 type III secretion apparatus lipoprotein, YscJ/HrcJ family K03222 yscJ; type III secretion protein J D Pmen_0026 type III secretion apparatus protein, HrpE/YscL family K03223 yscL; type III secretion protein L D Pmen_0041 ATPase, FliI/YscN family K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D Pmen_0044 hypothetical protein K03225 yscQ; type III secretion protein Q D Pmen_0045 surface presentation of antigens (SPOA) protein K03225 yscQ; type III secretion protein Q D Pmen_0046 Yop virulence translocation R K03226 yscR; type III secretion protein R D Pmen_0047 type III secretion protein, HrpO family K03227 yscS; type III secretion protein S D Pmen_0048 type III secretion protein SpaR/YscT/HrcT K03228 yscT; type III secretion protein T D Pmen_0049 type III secretion protein, YscU/HrpY family K03229 yscU; type III secretion protein U D Pmen_0039 type III secretion protein, HrcV family K03230 yscV; type III secretion protein V D Pmen_0038 type III secretion outer membrane protein PopN K04058 yscW; type III secretion protein W D Pmen_0233 hypothetical protein K18376 hrpF; type III secretion translocon protein HrpF D Pmen_2808 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Pmen_4426 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Pmen_2809 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Pmen_4425 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Pmen_2793 cytoplasmic domain of flagellar protein FhlB-like protein K04061 flhB2; flagellar biosynthesis protein D Pmen_4417 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Pmen_2825 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Pmen_2823 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Pmen_4415 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Pmen_2822 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Pmen_4414 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Pmen_4421 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Pmen_2814 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Pmen_2813 flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ D Pmen_2812 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Pmen_4422 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Pmen_4423 export protein FliQ, family 3 K02420 fliQ; flagellar biosynthesis protein FliQ D Pmen_2811 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Pmen_2810 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Pmen_4424 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Pmen_3395 Protein-disulfide isomerase-like protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D Pmen_0104 ImcF domain protein K11891 impL; type VI secretion system protein ImpL D Pmen_2316 ImcF domain protein K11891 impL; type VI secretion system protein ImpL D Pmen_0103 conserved hypothetical protein K11892 impK; type VI secretion system protein ImpK D Pmen_2317 OmpA/MotB domain protein K11892 impK; type VI secretion system protein ImpK D Pmen_0102 protein of unknown function DUF876 K11893 impJ; type VI secretion system protein ImpJ D Pmen_2318 protein of unknown function DUF876 K11893 impJ; type VI secretion system protein ImpJ D Pmen_0096 protein of unknown function DUF1305 K11895 impH; type VI secretion system protein ImpH D Pmen_2330 protein of unknown function DUF1305 K11895 impH; type VI secretion system protein ImpH D Pmen_0095 protein of unknown function DUF879 K11896 impG; type VI secretion system protein ImpG D Pmen_2329 protein of unknown function DUF879 K11896 impG; type VI secretion system protein ImpG D Pmen_2328 GPW/gp25 family protein K11897 impF; type VI secretion system protein ImpF D Pmen_2323 protein of unknown function DUF877 K11900 impC; type VI secretion system protein ImpC D Pmen_0091 protein of unknown function DUF877 K11900 impC; type VI secretion system protein ImpC D Pmen_2322 uncharacterized conserved protein UCP028301 K11901 impB; type VI secretion system protein ImpB D Pmen_0090 uncharacterized conserved protein UCP028301 K11901 impB; type VI secretion system protein ImpB D Pmen_2321 ImpA domain protein K11902 impA; type VI secretion system protein ImpA D Pmen_4487 protein of unknown function DUF796 K11903 hcp; type VI secretion system secreted protein Hcp D Pmen_2324 protein of unknown function DUF796 K11903 hcp; type VI secretion system secreted protein Hcp D Pmen_0107 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D Pmen_4488 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D Pmen_0820 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D Pmen_2332 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D Pmen_0092 GPW/gp25 family protein K11905 K11905; type VI secretion system protein D Pmen_2319 conserved hypothetical protein K11906 vasD; type VI secretion system protein VasD D Pmen_0101 conserved hypothetical protein K11906 vasD; type VI secretion system protein VasD D Pmen_0097 ATPase AAA-2 domain protein K11907 vasG; type VI secretion system protein VasG D Pmen_2331 ATPase AAA-2 domain protein K11907 vasG; type VI secretion system protein VasG D Pmen_0089 ImpA domain protein K11910 vasJ; type VI secretion system protein VasJ D Pmen_2315 conserved hypothetical protein K11890 impM; type VI secretion system protein ImpM D Pmen_0100 putative FHA domain containing protein K11894 impI; type VI secretion system protein ImpI D Pmen_2327 virulence protein, SciE type K11898 impE; type VI secretion system protein ImpE D Pmen_2313 protein kinase K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] D Pmen_2320 putative FHA domain containing protein K11913 fha1; type VI secretion system protein D Pmen_0098 transcriptional regulator, Fis family K11914 sfa2; sigma-54 dependent transcriptional regulator D Pmen_2314 protein phosphatase 2C domain protein K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16] D Pmen_0105 protein phosphatase 2C domain protein K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16] D Pmen_0106 protein kinase K11916 stk1; serine/threonine-protein kinase Stk1 [EC:2.7.11.-] D Pmen_0931 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Pmen_4243 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Pmen_3518 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Pmen_3922 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Pmen_3517 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Pmen_3611 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Pmen_3889 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Pmen_3402 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Pmen_4175 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Pmen_3519 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Pmen_4620 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Pmen_0518 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Pmen_0517 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Pmen_0516 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:pmy02042] D Pmen_2112 Zonular occludens toxin K10954 zot; zona occludens toxin D Pmen_4406 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Pmen_3404 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:pmy02022] D Pmen_4407 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Pmen_4408 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Pmen_2975 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Pmen_2976 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Pmen_0360 Osmolarity sensor protein envZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Pmen_0359 Two-component response regulator OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Pmen_3149 integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D Pmen_3150 two component transcriptional regulator, winged helix family K07661 rstA; two-component system, OmpR family, response regulator RstA D Pmen_1831 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Pmen_4119 integral membrane sensor signal transduction histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D Pmen_4120 two component transcriptional regulator, winged helix family K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D Pmen_1173 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Pmen_2235 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Pmen_1174 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Pmen_2234 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Pmen_1460 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Pmen_1459 two component transcriptional regulator, winged helix family K07774 tctD; two-component system, OmpR family, response regulator TctD D Pmen_1732 integral membrane sensor signal transduction histidine kinase K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3] D Pmen_0795 integral membrane sensor signal transduction histidine kinase K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3] D Pmen_1731 two component transcriptional regulator, winged helix family K19610 pfeR; two-component system, OmpR family, response regulator PfeR D Pmen_0794 two component transcriptional regulator, winged helix family K19610 pfeR; two-component system, OmpR family, response regulator PfeR D Pmen_1829 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Pmen_1148 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Pmen_1995 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Pmen_4314 response regulator receiver protein K02483 K02483; two-component system, OmpR family, response regulator D Pmen_3452 putative PAS/PAC sensor protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D Pmen_1950 integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D Pmen_1730 multi-sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Pmen_2375 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Pmen_1951 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Pmen_0084 integral membrane sensor signal transduction histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D Pmen_0278 Sensory transduction protein kinase AlgZ K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D Pmen_0279 Two-component response regulator AlgR K08083 algR; two-component system, LytTR family, response regulator AlgR D Pmen_4143 PAS/PAC sensor signal transduction histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Pmen_4144 nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Pmen_3589 Two-component response regulator CbrB K07713 zraR; two-component system, NtrC family, response regulator HydG D Pmen_0966 Sensor protein PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D Pmen_0965 Two-component response regulator PilR K02667 pilR; two-component system, NtrC family, response regulator PilR D Pmen_4293 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pmen_4562 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pmen_4561 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Pmen_4294 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Pmen_0175 Alginate biosynthesis sensor protein KinB K11383 kinB; two-component system, NtrC family, sensor histidine kinase KinB [EC:2.7.13.3] D Pmen_0176 Two-component response regulator AlgB K11384 algB; two-component system, NtrC family, response regulator AlgB D Pmen_2802 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Pmen_1568 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Pmen_2804 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Pmen_1570 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Pmen_2801 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Pmen_1564 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Pmen_0171 CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Pmen_2185 putative CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Pmen_2852 putative CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Pmen_1572 CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Pmen_0408 CheA signal transduction histidine kinase K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D Pmen_0403 response regulator receiver protein K02657 pilG; twitching motility two-component system response regulator PilG D Pmen_0404 response regulator receiver protein K02658 pilH; twitching motility two-component system response regulator PilH D Pmen_0409 CheB methylesterase K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D Pmen_3815 response regulator receiver protein K14987 fixJ; two-component system, LuxR family, response regulator FixJ D Pmen_2828 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Pmen_2827 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Pmen_4419 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Pmen_0847 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Pmen_0848 two component transcriptional regulator, Fis family K15012 regA; two-component system, response regulator RegA D Pmen_1911 integral membrane sensor hybrid histidine kinase K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3] D Pmen_2468 integral membrane sensor hybrid histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D Pmen_2818 Hpt protein K20976 hptB; histidine phosphotransfer protein HptB D Pmen_2819 response regulator receiver protein K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator D Pmen_2580 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein K22067 nasS; two-component system, oxyanion-binding sensor D Pmen_2581 response regulator receiver and ANTAR domain protein K07183 nasT; two-component system, response regulator / RNA-binding antiterminator D Pmen_3766 integral membrane sensor hybrid histidine kinase K20971 ladS; two-component system, sensor histidine kinase LadS D Pmen_0706 integral membrane sensor hybrid histidine kinase K20972 retS; two-component system, sensor histidine kinase RetS D Pmen_0835 multi-sensor hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 02035 Bacterial motility proteins [BR:pmy02035] D Pmen_2802 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Pmen_1568 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Pmen_2796 putative CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Pmen_2797 putative CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Pmen_1566 putative CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Pmen_0170 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Pmen_1565 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Pmen_2851 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Pmen_2801 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Pmen_1564 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Pmen_0171 CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Pmen_2804 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Pmen_1570 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Pmen_2803 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ D Pmen_2185 putative CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Pmen_2852 putative CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Pmen_1572 CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Pmen_2000 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1701 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_3139 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_3218 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_0734 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_0782 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2174 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1353 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1210 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1567 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1571 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1998 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2154 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2974 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_3309 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_3669 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2451 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2471 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_2650 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_4367 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Pmen_1902 methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor D Pmen_1800 methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor D Pmen_4451 methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor D Pmen_2823 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Pmen_4415 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Pmen_2822 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Pmen_4414 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Pmen_2821 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Pmen_2813 flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ D Pmen_2812 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Pmen_4422 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Pmen_4423 export protein FliQ, family 3 K02420 fliQ; flagellar biosynthesis protein FliQ D Pmen_2811 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Pmen_2810 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Pmen_4424 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Pmen_2808 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Pmen_4426 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Pmen_2809 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Pmen_4425 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Pmen_4416 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Pmen_2824 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Pmen_2815 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Pmen_4420 surface presentation of antigens (SPOA) protein K02416 fliM; flagellar motor switch protein FliM D Pmen_4421 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Pmen_2814 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Pmen_4417 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Pmen_2825 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Pmen_0213 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Pmen_2843 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Pmen_2853 SAF domain protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D Pmen_0205 SAF domain protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D Pmen_0212 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Pmen_2844 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Pmen_2816 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Pmen_0314 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Pmen_0190 hypothetical protein K02415 fliL; flagellar protein FliL D Pmen_2826 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Pmen_4418 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Pmen_2817 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Pmen_0189 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Pmen_0206 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Pmen_2850 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Pmen_0207 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Pmen_2849 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Pmen_2848 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Pmen_0208 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Pmen_0210 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Pmen_2846 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Pmen_0211 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Pmen_2845 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Pmen_2842 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D Pmen_0209 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE D Pmen_2847 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE D Pmen_0215 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Pmen_2841 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Pmen_0216 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Pmen_2840 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Pmen_2855 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D Pmen_4411 hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN D Pmen_1393 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Pmen_2835 flagellin domain protein K02406 fliC; flagellin D Pmen_0196 flagellin domain protein K02406 fliC; flagellin D Pmen_0186 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Pmen_2833 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Pmen_2831 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Pmen_0187 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Pmen_2832 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Pmen_2830 hypothetical protein K02423 fliT; flagellar protein FliT D Pmen_2805 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Pmen_0191 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Pmen_2800 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_0192 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_0624 Flagellar motor component-like protein K02556 motA; chemotaxis protein MotA D Pmen_1299 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Pmen_2799 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_0193 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_0625 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_1300 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pmen_2829 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Pmen_2828 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Pmen_2827 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Pmen_4419 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Pmen_2009 L-cystine-binding protein / Diaminopimelate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D Pmen_2854 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Pmen_4412 Anti-sigma-28 factor, FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM D Pmen_2834 flagellar protein FlaG protein K06603 flaG; flagellar protein FlaG D Pmen_2807 GTP-binding signal recognition particle SRP54, G-domain protein K02404 flhF; flagellar biosynthesis protein FlhF D Pmen_2806 Cobyrinic acid a,c-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG D Pmen_0403 response regulator receiver protein K02657 pilG; twitching motility two-component system response regulator PilG D Pmen_0404 response regulator receiver protein K02658 pilH; twitching motility two-component system response regulator PilH D Pmen_0405 putative CheW protein K02659 pilI; twitching motility protein PilI D Pmen_0406 methyl-accepting chemotaxis sensory transducer K02660 pilJ; twitching motility protein PilJ D Pmen_0407 Protein-glutamate O-methyltransferase K02661 pilK; type IV pilus assembly protein PilK D Pmen_0408 CheA signal transduction histidine kinase K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D Pmen_0965 Two-component response regulator PilR K02667 pilR; two-component system, NtrC family, response regulator PilR D Pmen_0966 Sensor protein PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D Pmen_4149 pilus retraction ATPase PilT K02669 pilT; twitching motility protein PilT D Pmen_4148 twitching motility protein K02670 pilU; twitching motility protein PilU D Pmen_2026 twitching motility protein K02670 pilU; twitching motility protein PilU D Pmen_4442 twitching motility protein K02670 pilU; twitching motility protein PilU D Pmen_0409 CheB methylesterase K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D Pmen_0410 putative CheW protein K06598 chpC; chemosensory pili system protein ChpC D Pmen_0661 Lysine exporter protein (LYSE/YGGA) K06600 chpE; chemosensory pili system protein ChpE D Pmen_0777 Fimbrial protein pilin K02650 pilA; type IV pilus assembly protein PilA D Pmen_0775 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D Pmen_0774 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Pmen_0773 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Pmen_3502 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D Pmen_0546 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ D Pmen_0545 Pilus assembly protein, PilQ K02665 pilP; type IV pilus assembly protein PilP D Pmen_0544 Pilus assembly protein, PilO K02664 pilO; type IV pilus assembly protein PilO D Pmen_0543 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Pmen_0542 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Pmen_1635 type IV pilus assembly PilZ K02676 pilZ; type IV pilus assembly protein PilZ D Pmen_0961 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D Pmen_0960 Tfp pilus assembly protein PilW-like protein K02672 pilW; type IV pilus assembly protein PilW D Pmen_0959 Tfp pilus assembly protein PilX-like protein K02673 pilX; type IV pilus assembly protein PilX D Pmen_0958 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein K02674 pilY1; type IV pilus assembly protein PilY1 D Pmen_0957 Tfp pilus assembly protein PilE-like protein K02655 pilE; type IV pilus assembly protein PilE C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:pmy04812] D Pmen_0856 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Pmen_0927 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Pmen_0926 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Pmen_1235 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Pmen_1234 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Pmen_1233 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Pmen_2798 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Pmen_0553 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Pmen_3433 plasmid segregation oscillating ATPase ParF K03496 parA; chromosome partitioning protein D Pmen_4616 chromosome segregation ATPase K03496 parA; chromosome partitioning protein D Pmen_4615 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:pmy04147] D Pmen_2491 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Pmen_3033 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Pmen_1594 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pmen_1311 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pmen_1451 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pmen_0460 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Pmen_3261 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Pmen_2773 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Pmen_1294 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Pmen_0497 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Pmen_3564 peptidase M19, renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Pmen_3688 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pmen_3624 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Pmen_3594 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Pmen_3486 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Pmen_3911 translation elongation factor Tu K02358 tuf; elongation factor Tu D Pmen_3923 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Pmen_1532 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Pmen_1783 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Pmen_4465 Bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D Pmen_2970 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_1495 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_1496 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_2464 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pmen_4075 Na+/Pi-cotransporter K14683 SLC34A; solute carrier family 34 (sodium-dependent phosphate cotransporter) D Pmen_3662 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3820 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_3597 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1138 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2591 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_2036 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_1725 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_0745 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pmen_0449 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Pmen_3359 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Pmen_2616 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Pmen_0277 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Pmen_1394 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Pmen_0508 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Pmen_2293 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Pmen_3345 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Pmen_4140 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0341 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_2858 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0342 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0676 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_3468 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_2634 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_4366 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_4525 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pmen_0299 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Pmen_1696 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Pmen_3113 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Pmen_4232 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pmen_0708 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Pmen_1104 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2501 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pmen_2706 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit D Pmen_3143 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Pmen_4486 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Pmen_3612 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Pmen_0511 Lipocalin family protein K03098 APOD; apolipoprotein D and lipocalin family protein C 02048 Prokaryotic defense system [BR:pmy02048] D Pmen_3755 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 D Pmen_3754 CRISPR-associated protein, Cas2 family K09951 cas2; CRISPR-associated protein Cas2 D Pmen_3763 CRISPR-associated helicase, Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D Pmen_3760 CRISPR-associated protein, Cse1 family K19123 casA; CRISPR system Cascade subunit CasA D Pmen_3759 CRISPR-associated protein, Cse2 family K19046 casB; CRISPR system Cascade subunit CasB D Pmen_3758 CRISPR-associated protein, Cse4 family K19124 casC; CRISPR system Cascade subunit CasC D Pmen_3757 CRISPR-associated protein, Cas5e family K19125 casD; CRISPR system Cascade subunit CasD D Pmen_3756 CRISPR-associated protein, Cse3 family K19126 casE; CRISPR system Cascade subunit CasE D Pmen_0567 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Pmen_0564 restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Pmen_0563 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Pmen_4036 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pmen_3975 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D Pmen_4033 NERD domain protein K07448 mrr; restriction system protein D Pmen_4032 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D Pmen_2126 plasmid stabilization system K19092 parE1_3_4; toxin ParE1/3/4 D Pmen_3762 addiction module toxin, RelE/StbE family K19092 parE1_3_4; toxin ParE1/3/4 D Pmen_2127 putative transcriptional regulator, CopG/Arc/MetJ family K07746 parD1_3_4; antitoxin ParD1/3/4 D Pmen_1045 PilT protein domain protein K07062 fitB; toxin FitB [EC:3.1.-.-] D Pmen_1046 hypothetical protein K21495 fitA; antitoxin FitA D Pmen_0927 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Pmen_0856 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Pmen_0601 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Pmen_0604 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Pmen_2733 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pmen_1465 hypothetical protein K19168 cptA; toxin CptA D Pmen_1464 protein of unknown function DUF339 K09159 cptB; antitoxin CptB D Pmen_3511 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:pmy04090] C 01504 Antimicrobial resistance genes [BR:pmy01504] D Pmen_3087 Gentamicin 3'-N-acetyltransferase K03395 aac3-I; aminoglycoside 3-N-acetyltransferase I [EC:2.3.1.60] D Pmen_2178 3''-adenylyltransferase K00984 aadA; streptomycin 3"-adenylyltransferase [EC:2.7.7.47] D Pmen_3882 transporter, NhaC family K18218 tet35; tetracycline resistance efflux pump D Pmen_0591 Acetyltransferase (isoleucine patch superfamily)-like protein K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] D Pmen_3210 major facilitator superfamily MFS_1 K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D Pmen_1173 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Pmen_2235 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Pmen_1174 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Pmen_2234 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Pmen_2183 transcriptional regulator, LysR family K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator D Pmen_1157 transcriptional regulator, LysR family K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator D Pmen_2201 transcriptional regulator, LysR family K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator D Pmen_1260 outer membrane porin K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D Pmen_1097 outer membrane porin K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D Pmen_2975 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Pmen_2976 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Pmen_3715 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_0825 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_1921 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_1209 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pmen_3716 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pmen_1922 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Pmen_1208 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Pmen_0826 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pmen_3717 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Pmen_2181 efflux transporter, RND family, MFP subunit K18298 mexE; membrane fusion protein, multidrug efflux system D Pmen_2180 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18299 mexF; multidrug efflux pump D Pmen_2179 RND efflux system, outer membrane lipoprotein, NodT family K18300 oprN; outer membrane protein, multidrug efflux system D Pmen_3352 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D Pmen_3351 efflux transporter, RND family, MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system D Pmen_2778 efflux transporter, RND family, MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system D Pmen_3350 acriflavin resistance protein K18303 mexK; multidrug efflux pump D Pmen_0812 putative transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Pmen_0610 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pmen_0718 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:pmy00537] D Pmen_0497 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Pmen_3564 peptidase M19, renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:pmy03100] D Pmen_R0049 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pmen_R0051 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pmen_R0053 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pmen_R0010 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pmen_R0072 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pmen_R0036 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pmen_R0080 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pmen_R0001 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pmen_R0054 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pmen_R0039 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pmen_R0055 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pmen_R0057 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pmen_R0056 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pmen_R0004 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Pmen_R0027 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Pmen_R0021 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Pmen_R0060 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Pmen_R0059 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Pmen_R0044 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Pmen_R0014 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Pmen_R0015 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Pmen_R0028 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pmen_R0048 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pmen_R0030 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pmen_R0050 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pmen_R0052 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pmen_R0068 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pmen_R0022 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pmen_R0029 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pmen_R0045 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pmen_R0031 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pmen_R0040 tRNA-His K14226 tRNA-His; tRNA His D Pmen_R0009 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Pmen_R0081 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Pmen_R0035 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Pmen_R0073 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Pmen_R0041 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pmen_R0043 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pmen_R0065 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pmen_R0002 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pmen_R0003 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pmen_R0063 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pmen_R0006 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Pmen_R0019 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Pmen_R0075 tRNA-Met K14230 tRNA-Met; tRNA Met D Pmen_R0013 tRNA-Met K14230 tRNA-Met; tRNA Met D Pmen_R0024 tRNA-Met K14230 tRNA-Met; tRNA Met D Pmen_R0025 tRNA-Met K14230 tRNA-Met; tRNA Met D Pmen_R0064 tRNA-Met K14230 tRNA-Met; tRNA Met D Pmen_R0076 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Pmen_R0026 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Pmen_R0005 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Pmen_R0033 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Pmen_R0046 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pmen_R0058 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pmen_R0023 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pmen_R0042 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pmen_R0077 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pmen_R0067 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pmen_R0062 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pmen_R0066 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Pmen_R0069 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Pmen_R0020 tRNA-Val K14237 tRNA-Val; tRNA Val D Pmen_R0061 tRNA-Val K14237 tRNA-Val; tRNA Val D Pmen_R0032 tRNA-Val K14237 tRNA-Val; tRNA Val D Pmen_R0008 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pmen_R0034 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pmen_R0074 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pmen_R0082 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pmen_R0011 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pmen_R0079 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pmen_R0037 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pmen_R0071 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pmen_R0012 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pmen_R0038 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pmen_R0078 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pmen_R0070 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pmen_R0047 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Pmen_R0007 bacterial RNase P K01978 rnpB; M1 RNA D Pmen_R0016 tmRNA as predicted by Rfam (RF00023), score 142.23 K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Pmen_0501 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein K17735 lcdH; carnitine 3-dehydrogenase [EC:1.1.1.108] D Pmen_0068 aldo/keto reductase K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346] D Pmen_1371 3-hydroxyisobutyrate dehydrogenase K19711 E1.1.1.387; L-serine 3-dehydrogenase (NAD+) [EC:1.1.1.387] D Pmen_3189 glucose sorbosone dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D Pmen_0465 glucose sorbosone dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D Pmen_4187 aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] D Pmen_1522 glyceraldehyde-3-phosphate dehydrogenase K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107] D Pmen_3439 aldehyde dehydrogenase (acceptor) K23463 tgnC; (Z)-2-((N-methylformamido)methylene)-5-hydroxybutyrolactone dehydrogenase [EC:1.2.1.-] D Pmen_2876 pyruvate ferredoxin/flavodoxin oxidoreductase K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D Pmen_2951 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D Pmen_1967 coenzyme PQQ biosynthesis protein C K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11] D Pmen_4483 (2Fe-2S)-binding domain protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D Pmen_2198 (2Fe-2S)-binding domain protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D Pmen_4482 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding protein K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D Pmen_2199 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding protein K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D Pmen_3176 NADP oxidoreductase, coenzyme F420-dependent K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D Pmen_1508 NADP oxidoreductase, coenzyme F420-dependent K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D Pmen_2708 Electron-transferring-flavoprotein dehydrogenase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D Pmen_1075 FAD dependent oxidoreductase K18208 RNLS; renalase [EC:1.6.3.5] D Pmen_0059 Alcohol dehydrogenase, zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D Pmen_0313 Alcohol dehydrogenase, zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D Pmen_1501 Alcohol dehydrogenase, zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D Pmen_3541 Alcohol dehydrogenase, zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D Pmen_3168 NAD(P)H dehydrogenase (quinone) K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10] D Pmen_3160 NAD(P)H dehydrogenase (quinone) K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D Pmen_1298 NAD(P)H dehydrogenase (quinone) K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D Pmen_2002 NAD(P)H dehydrogenase (quinone) K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D Pmen_1324 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D Pmen_0572 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Pmen_2521 methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D Pmen_1531 Glutathione S-transferase, N-terminal domain protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D Pmen_2382 Glutathione S-transferase, C-terminal domain protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D Pmen_1011 oxidoreductase, molybdopterin binding protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D Pmen_1714 cytochrome B561 K12262 cybB; superoxide oxidase [EC:1.10.3.17] D Pmen_1661 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Pmen_2432 thiol peroxidase (atypical 2-Cys peroxiredoxin) K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Pmen_4325 1-Cys peroxiredoxin K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Pmen_1323 Peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D Pmen_4453 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D Pmen_2630 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D Pmen_1238 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D Pmen_1561 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D Pmen_0803 2OG-Fe(II) oxygenase K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-] D Pmen_3580 globin K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D Pmen_2871 Lysine/ornithine N-monooxygenase-like protein K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196] D Pmen_3455 hypothetical protein K22342 dmmA; dimethylamine monooxygenase subunit A [EC:1.14.13.238] D Pmen_3454 ferredoxin K22343 dmmB; dimethylamine monooxygenase subunit B [EC:1.14.13.238] D Pmen_3453 hypothetical protein K22344 dmmC; dimethylamine monooxygenase subunit C [EC:1.14.13.238] D Pmen_2363 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28] D Pmen_3478 luciferase family protein K23464 tgnB; flavin-dependent trigonelline monooxygenase, oxygenase component [EC:1.14.14.-] D Pmen_2656 multicopper oxidase, type 3 K22348 moxA; manganese oxidase [EC:1.16.3.3] D Pmen_0752 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Pmen_1293 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Pmen_2989 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D Pmen_3551 glutaredoxin K18917 mrx1; mycoredoxin [EC:1.20.4.3] D Pmen_1969 coenzyme PQQ biosynthesis protein E K06139 pqqE; PqqA peptide cyclase [EC:1.21.98.4] D Pmen_3023 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Pmen_1066 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D Pmen_4563 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D Pmen_2425 Trans-aconitate 2-methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144] D Pmen_0586 Carbamoyltransferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-] D Pmen_3693 N-hydroxyarylamine O-acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118] D Pmen_1545 Beta-ketoacyl-acyl-carrier-protein synthase I K16872 E2.3.1.207; beta-ketodecanoyl-[acyl-carrier-protein] synthase [EC:2.3.1.207] D Pmen_3783 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D Pmen_1125 lyso-ornithine lipid acyltransferase K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270] D Pmen_3747 GCN5-related N-acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-] D Pmen_3076 GCN5-related N-acetyltransferase K03829 yedL; putative acetyltransferase [EC:2.3.1.-] D Pmen_0694 GCN5-related N-acetyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-] D Pmen_2390 Leucyltransferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D Pmen_2448 transglutaminase domain protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13] D Pmen_2391 Arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D Pmen_3120 glucosyl-glycerol phosphate synthase K03692 E2.4.1.213; glucosylglycerol-phosphate synthase [EC:2.4.1.213] D Pmen_1289 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D Pmen_1801 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D Pmen_4214 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Pmen_1601 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Pmen_2084 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D Pmen_3229 protein of unknown function DUF344 K23753 ppk2; AMP-polyphosphate phosphotransferase [EC:2.7.4.33] D Pmen_0577 (Glutamate--ammonia-ligase) adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D Pmen_0558 protein of unknown function UPF0061 K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D Pmen_1792 (Isocitrate dehydrogenase (NADP(+))) kinase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-] D Pmen_3391 L-carnitine dehydratase/bile acid-inducible protein F K07749 frc; formyl-CoA transferase [EC:2.8.3.16] D Pmen_0529 poly(3-hydroxyalkanoate) depolymerase K22250 phaZ; poly(3-hydroxyoctanoate) depolymerase [EC:3.1.1.76] D Pmen_3124 alpha/beta hydrolase fold protein K19311 lipV; lipase [EC:3.1.1.-] D Pmen_0502 thioesterase-like protein K27492 cdhB; betainyl-CoA thioesterase [EC:3.1.2.33] D Pmen_1926 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Pmen_0382 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Pmen_2729 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Pmen_4381 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Pmen_1834 PHP C-terminal domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D Pmen_2465 phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D Pmen_1798 diguanylate phosphodiesterase K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D Pmen_0836 response regulator receiver protein K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Pmen_4124 metal dependent phosphohydrolase K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Pmen_0064 sulfatase K01133 betC; choline-sulfatase [EC:3.1.6.6] D Pmen_1715 beta-lactamase domain protein K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D Pmen_1369 beta-lactamase domain protein K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D Pmen_1350 Deoxyribonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1] D Pmen_4067 Endonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1] D Pmen_1636 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Pmen_2443 Sec-independent protein translocase TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Pmen_0783 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Pmen_3136 Glucan 1,4-alpha-maltotetraohydrolase K22253 mta; glucan 1,4-alpha-maltotetraohydrolase [EC:3.2.1.60] D Pmen_0055 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Pmen_1414 Penicillin amidase K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97] D Pmen_0862 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D Pmen_3438 3-oxoadipate enol-lactonase K23465 tgnD; (E)-2-((N-methylformamido)methylene)succinate hydrolase [EC:3.5.1.-] D Pmen_3705 Hydroxydechloroatrazine ethylaminohydrolase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32] D Pmen_0138 Endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Pmen_0350 adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25] D Pmen_1623 maf protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D Pmen_2929 ATPase associated with various cellular activities, AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Pmen_3320 ATPase associated with various cellular activities, AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Pmen_2450 ATPase associated with various cellular activities, AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Pmen_4343 protein of unknown function DUF1234 K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D Pmen_0630 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Pmen_3060 aminotransferase, class V K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-] D Pmen_3576 peptidylprolyl isomerase, FKBP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D Pmen_3826 UDP-N-acetylmuramate K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D Pmen_1191 RNA-3'-phosphate cyclase K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4] D Pmen_1401 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D Pmen_1402 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D Pmen_1403 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D Pmen_1595 NADH:ubiquinone oxidoreductase, subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D Pmen_1596 NADH:ubiquinone oxidoreductase, subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D Pmen_1597 NADH:ubiquinone oxidoreductase, subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D Pmen_1598 NADH:ubiquinone oxidoreductase, subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D Pmen_1599 NADH:ubiquinone oxidoreductase, subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D Pmen_1600 NADH:ubiquinone oxidoreductase, subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D Pmen_2610 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D Pmen_4225 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D Pmen_3583 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A C 99982 Energy metabolism D Pmen_0391 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein D Pmen_3506 ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S D Pmen_3019 4Fe-4S ferredoxin, iron-sulfur binding domain protein K05524 fdxA; ferredoxin D Pmen_1400 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D Pmen_1399 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D Pmen_1404 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D Pmen_3283 flavodoxin/nitric oxide synthase K06205 mioC; MioC protein D Pmen_3510 FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins D Pmen_2980 periplasmic nitrate reductase chaperone NapD K02570 napD; periplasmic nitrate reductase NapD D Pmen_2979 periplasmic nitrate reductase subunit NapE K02571 napE; periplasmic nitrate reductase NapE D Pmen_2983 periplasmic nitrate reductase subunit NapC K02569 napC; cytochrome c-type protein NapC D Pmen_2707 electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D Pmen_0075 protein of unknown function DUF1458 K09165 K09165; dodecin C 99983 Lipid metabolism D Pmen_3764 acyl-CoA dehydrogenase domain protein K09456 aidB; putative acyl-CoA dehydrogenase C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D Pmen_0976 protein of unknown function DUF540 K06203 cysZ; CysZ protein D Pmen_4150 alanine racemase domain protein K06997 yggS; PLP dependent protein D Pmen_3328 GCN5-related N-acetyltransferase K22479 argA; N-acetyltransferase C 99986 Glycan metabolism D Pmen_1028 Sel1 domain protein repeat-containing protein K19292 algK; alginate biosynthesis protein AlgK D Pmen_1674 hypothetical protein K19292 algK; alginate biosynthesis protein AlgK D Pmen_2286 integral membrane protein-like protein K07027 K07027; glycosyltransferase 2 family protein D Pmen_0683 integral membrane protein-like protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D Pmen_4587 cobalamin biosynthesis protein CobW K02234 cobW; cobalamin biosynthesis protein CobW D Pmen_0283 HemY domain protein K02498 hemY; HemY protein D Pmen_0521 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D Pmen_0522 protein of unknown function DUF1243 K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D Pmen_0258 protein of unknown function DUF526 K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D Pmen_4584 Mg-chelatase subunit ChlD-like protein K13580 K13580; magnesium chelatase subunit ChlD-like protein C 99988 Secondary metabolism D Pmen_4056 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) D Pmen_1997 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D Pmen_2441 DoxX family protein K15977 K15977; putative oxidoreductase D Pmen_3561 Carboxylesterase K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D Pmen_1407 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Pmen_3523 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Pmen_2395 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Pmen_3069 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Pmen_1263 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Pmen_0285 regulator of RpoD, Rsd/AlgQ K07740 rsd; regulator of sigma D D Pmen_0259 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2 D Pmen_0358 RNA binding S1 domain protein K06959 tex; protein Tex C 99974 Translation D Pmen_0316 ABC transporter related protein K13926 rbbA; ribosome-dependent ATPase D Pmen_1284 beta-lactamase domain protein K07576 K07576; metallo-beta-lactamase family protein D Pmen_1856 beta-lactamase domain protein K07576 K07576; metallo-beta-lactamase family protein D Pmen_2196 exonuclease of the beta-lactamase fold involved in RNA processing-like protein K07577 K07577; putative mRNA 3-end processing factor C 99975 Protein processing D Pmen_1727 protein of unknown function DUF306, Meta and HslJ K03668 hslJ; heat shock protein HslJ D Pmen_2394 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D Pmen_2049 trigger factor K03545 tig; trigger factor D Pmen_1012 Ferric reductase domain protein protein transmembrane component, N-terminal domain protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D Pmen_0666 UreE urease accessory domain protein K03187 ureE; urease accessory protein D Pmen_0665 Urease accessory protein UreF K03188 ureF; urease accessory protein D Pmen_0664 urease accessory protein UreG K03189 ureG; urease accessory protein D Pmen_0696 Urease accessory protein UreD K03190 ureD; urease accessory protein D Pmen_0663 HupE/UreJ protein K03192 ureJ; urease accessory protein D Pmen_3632 SsrA-binding protein K03664 smpB; SsrA-binding protein D Pmen_0257 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein D Pmen_4235 2OG-Fe(II) oxygenase K07394 K07394; SM-20-related protein D Pmen_1351 protein-disulfide isomerase-like protein K07396 K07396; putative protein-disulfide isomerase D Pmen_1694 DSBA oxidoreductase K07396 K07396; putative protein-disulfide isomerase D Pmen_3942 OsmC family protein K07397 yhfA; putative redox protein D Pmen_2484 OsmC family protein K07397 yhfA; putative redox protein D Pmen_2161 HesB/YadR/YfhF-family protein K07400 nfuA; Fe/S biogenesis protein NfuA D Pmen_1817 conserved hypothetical selenoprotein K07401 K07401; selenoprotein W-related protein D Pmen_2753 molybdenum cofactor sulfurylase K07402 xdhC; xanthine dehydrogenase accessory factor D Pmen_4481 protein of unknown function DUF182 K07402 xdhC; xanthine dehydrogenase accessory factor D Pmen_2200 protein of unknown function DUF182 K07402 xdhC; xanthine dehydrogenase accessory factor D Pmen_0471 Nodulation efficiency protein NfeD K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D Pmen_0942 methylated-DNA-(protein)-cysteine S-methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D Pmen_1181 DNA repair protein RadC K03630 radC; DNA repair protein RadC D Pmen_4376 DNA replication and repair protein RadC K03630 radC; DNA repair protein RadC D Pmen_3332 protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC D Pmen_0910 protein of unknown function UPF0102 K07460 yraN; putative endonuclease D Pmen_3553 Excinuclease ABC, C subunit domain protein K07461 K07461; putative endonuclease D Pmen_0057 DNA protecting protein DprA K04096 smf; DNA processing protein D Pmen_2386 Recombination protein MgsA K07478 ycaJ; putative ATPase D Pmen_3978 virulence-associated E family protein K06919 K06919; putative DNA primase/helicase D Pmen_4601 transposase IS3/IS911 family protein K07483 K07483; transposase D Pmen_1988 transposase IS66 K07484 K07484; transposase D Pmen_1989 IS66 Orf2 family protein K07484 K07484; transposase D Pmen_1548 transposase IS66 K07484 K07484; transposase D Pmen_1549 IS66 Orf2 family protein K07484 K07484; transposase D Pmen_1163 transposase IS66 K07484 K07484; transposase D Pmen_1164 IS66 Orf2 family protein K07484 K07484; transposase D Pmen_1049 IS66 Orf2 family protein K07484 K07484; transposase D Pmen_1050 transposase IS66 K07484 K07484; transposase D Pmen_0036 transposase IS66 K07484 K07484; transposase D Pmen_0037 IS66 Orf2 family protein K07484 K07484; transposase D Pmen_0160 transposase IS66 K07484 K07484; transposase D Pmen_0161 IS66 Orf2 family protein K07484 K07484; transposase D Pmen_0431 transposase IS66 K07484 K07484; transposase D Pmen_0432 IS66 Orf2 family protein K07484 K07484; transposase D Pmen_0433 IS66 Orf2 family protein K07484 K07484; transposase D Pmen_0434 transposase IS66 K07484 K07484; transposase D Pmen_0435 IS66 Orf2 family protein K07484 K07484; transposase D Pmen_3637 IS66 Orf2 family protein K07484 K07484; transposase D Pmen_3638 transposase IS66 K07484 K07484; transposase D Pmen_4114 transposase IS66 K07484 K07484; transposase D Pmen_4115 IS66 Orf2 family protein K07484 K07484; transposase D Pmen_3084 transposase IS66 K07484 K07484; transposase D Pmen_3085 IS66 Orf2 family protein K07484 K07484; transposase D Pmen_3135 protein of unknown function DUF1568 K07491 rayT; REP-associated tyrosine transposase D Pmen_0731 protein of unknown function DUF1568 K07491 rayT; REP-associated tyrosine transposase C 99979 Viral proteins C 99998 Others D Pmen_2592 Rhodanese domain protein K03972 pspE; phage shock protein E D Pmen_3692 protein of unknown function DUF450 K07504 K07504; predicted type IV restriction endonuclease D Pmen_2646 conserved hypothetical protein 103 K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Pmen_3544 amino acid/polyamine/organocation transporter, APC superfamily K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D Pmen_1525 citrate/H+ symporter, CitMHS family K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D Pmen_0377 ATP/ADP translocase-like protein K03301 TC.AAA; ATP:ADP antiporter, AAA family D Pmen_1530 major facilitator superfamily MFS_1 K03301 TC.AAA; ATP:ADP antiporter, AAA family D Pmen_4552 choline/carnitine/betaine transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family D Pmen_4548 choline/carnitine/betaine transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family D Pmen_0352 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D Pmen_3631 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Pmen_2874 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Pmen_1700 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Pmen_0411 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Pmen_0135 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Pmen_2498 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D Pmen_3145 Bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family D Pmen_2679 Bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family D Pmen_2141 Bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family D Pmen_2764 permease for cytosine/purine, uracil, thiamine, allantoin K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D Pmen_1794 permease for cytosine/purine, uracil, thiamine, allantoin K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family C 99978 Cell growth D Pmen_4019 SpoVR family protein K06415 spoVR; stage V sporulation protein R D Pmen_4247 peptidase M23B K22719 envC; murein hydrolase activator C 99993 Cell motility D Pmen_0999 TfoX, C-terminal domain protein K07343 tfoX; DNA transformation protein and related proteins C 99995 Signaling proteins D Pmen_0781 signaling modulator of AmpD, AmpE K03807 ampE; AmpE protein D Pmen_1578 UspA domain protein K06149 uspA; universal stress protein A D Pmen_2576 UspA domain protein K14055 uspE; universal stress protein E D Pmen_3260 UspA domain protein K14055 uspE; universal stress protein E D Pmen_4138 GTP-binding protein TypA K06207 typA; GTP-binding protein D Pmen_3780 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D Pmen_1033 PhoH family protein K07175 phoH2; PhoH-like ATPase D Pmen_4017 putative serine protein kinase, PrkA K07180 prkA; serine protein kinase D Pmen_4543 putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase K07182 K07182; CBS domain-containing protein D Pmen_4097 putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase K07182 K07182; CBS domain-containing protein D Pmen_3097 SH3, type 3 domain protein K07184 ygiM; SH3 domain protein D Pmen_0020 hypothetical protein K13461 hopM1; effector protein HopM1 D Pmen_0939 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D Pmen_2387 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein D Pmen_1057 outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB D Pmen_1239 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D Pmen_1927 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D Pmen_1440 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB D Pmen_3044 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein D Pmen_3021 peptidase M23B K06194 nlpD; lipoprotein NlpD D Pmen_3873 OmpW family protein K07275 ompW; outer membrane protein D Pmen_0436 OmpW family protein K07275 ompW; outer membrane protein D Pmen_3675 hypothetical protein K07286 yajG; uncharacterized lipoprotein D Pmen_4258 AsmA family protein K07289 asmA; AsmA protein D Pmen_0784 AsmA family protein K07290 yhjG; AsmA family protein D Pmen_4304 protein of unknown function DUF107 K07340 ybbJ; inner membrane protein D Pmen_0317 secretion protein HlyD family protein K01993 ABC-2.TX; HlyD family secretion protein D Pmen_2158 SmpA/OmlA domain protein K04064 osmE; osmotically inducible lipoprotein OsmE D Pmen_4107 Inner membrane CreD family protein K06143 creD; inner membrane protein D Pmen_2787 CcmE/CycJ protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE D Pmen_2783 Tetratricopeptide TPR_2 repeat protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Pmen_2784 cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Pmen_3501 helix-turn-helix domain protein K15539 rodZ; cytoskeleton protein RodZ D Pmen_1491 protein of unknown function DUF1656 K21695 aaeX; protein AaeX C 99994 Others D Pmen_0183 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein D Pmen_1390 BFD domain protein (2Fe-2S)-binding domain protein K02192 bfd; bacterioferritin-associated ferredoxin D Pmen_3236 periplasmic glucan biosynthesis protein, MdoG K03670 mdoG; periplasmic glucans biosynthesis protein D Pmen_2438 Integral membrane protein TerC K05794 terC; tellurite resistance protein TerC D Pmen_2882 phosphonate C-P lyase system protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein D Pmen_4014 ApaG domain protein K06195 apaG; ApaG protein D Pmen_0269 Frataxin family protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY D Pmen_3326 imelysin, Metallo peptidase, MEROPS family M75 K07231 K07231; putative iron-regulated protein D Pmen_2217 copper resistance B precursor K07233 pcoB; copper resistance protein B D Pmen_3582 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO B B 09194 Poorly characterized C 99996 General function prediction only D Pmen_2712 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production D Pmen_1015 Mammalian cell entry related domain protein K06192 pqiB; paraquat-inducible protein B D Pmen_4518 GCN5-related N-acetyltransferase K02348 elaA; ElaA protein D Pmen_3603 transport-associated protein K04065 osmY; hyperosmotically inducible periplasmic protein D Pmen_1965 coenzyme PQQ biosynthesis protein A K06135 pqqA; pyrroloquinoline quinone biosynthesis protein A D Pmen_1966 coenzyme PQQ biosynthesis protein B K06136 pqqB; pyrroloquinoline quinone biosynthesis protein B D Pmen_1968 coenzyme PQQ synthesis D K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D D Pmen_1819 export-related chaperone CsaA K06878 K06878; tRNA-binding protein D Pmen_1229 globin K06886 glbN; hemoglobin D Pmen_3575 globin K06886 glbN; hemoglobin D Pmen_2456 Patatin K07001 K07001; NTE family protein D Pmen_1237 Patatin K07001 K07001; NTE family protein D Pmen_1816 Patatin K07001 K07001; NTE family protein D Pmen_3930 iron-sulfur cluster assembly accessory protein K15724 erpA; iron-sulfur cluster insertion protein D Pmen_1308 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein D Pmen_2988 tRNA-processing RNAse BN K07058 K07058; membrane protein D Pmen_3686 FxsA cytoplasmic membrane protein K07113 fxsA; UPF0716 protein FxsA D Pmen_3061 Cysteine desulfuration protein SufE K02426 sufE; cysteine desulfuration protein SufE D Pmen_1693 Rhodanese domain protein K07146 K07146; UPF0176 protein D Pmen_2400 protein of unknown function DUF489 K07153 hflD; high frequency lysogenization protein D Pmen_3122 Glyoxalase/bleomycin resistance protein/dioxygenase K04750 phnB; PhnB protein D Pmen_0200 protein of unknown function DUF336 K11477 glcG; glc operon protein GlcG D Pmen_1711 hypothetical protein K11739 nfrA; bacteriophage N4 adsorption protein A D Pmen_1710 General secretory system II, protein E domain protein K11740 nfrB; bacteriophage N4 adsorption protein B D Pmen_1520 NADPH-dependent FMN reductase K11811 arsH; arsenical resistance protein ArsH D Pmen_2861 ferric iron reductase K13255 fhuF; ferric iron reductase protein FhuF D Pmen_2269 membrane protein-like protein K02351 K02351; putative membrane protein D Pmen_3325 LemA family protein K03744 lemA; LemA protein D Pmen_1262 SlyX family protein K03745 slyX; SlyX protein D Pmen_3678 CreA family protein K05805 creA; CreA protein D Pmen_2966 protein of unknown function DUF335, SprT K02742 sprT; SprT protein D Pmen_2713 Sporulation domain protein K03749 dedD; DedD protein D Pmen_0549 Sporulation domain protein K03112 damX; DamX protein D Pmen_1014 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D Pmen_1013 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D Pmen_1718 protein of unknown function DUF202 K00389 yidH; putative membrane protein D Pmen_3022 protein of unknown function DUF368 K08974 K08974; putative membrane protein D Pmen_0728 membrane protein-like protein K08983 K08983; putative membrane protein D Pmen_1452 membrane protein-like protein K08985 K08985; putative lipoprotein D Pmen_1424 protein of unknown function DUF1145 K08993 yhhL; putative membrane protein D Pmen_2274 outer membrane protein-like protein K08995 K08995; putative membrane protein D Pmen_1420 SEC-C motif domain protein K09858 K09858; SEC-C motif domain protein D Pmen_3138 Maltose operon periplasmic K05775 malM; maltose operon periplasmic protein D Pmen_3240 phosphate-starvation-inducible E K13256 psiE; protein PsiE D Pmen_1081 alkylphosphonate utilization operon protein PhnA K06193 phnA; protein PhnA C 99997 Function unknown D Pmen_2359 hypothetical protein K06884 K06884; uncharacterized protein D Pmen_2258 hypothetical protein K06884 K06884; uncharacterized protein D Pmen_2305 hypothetical protein K06884 K06884; uncharacterized protein D Pmen_2308 hypothetical protein K06884 K06884; uncharacterized protein D Pmen_1881 Lysophospholipase-like protein K06889 K06889; uncharacterized protein D Pmen_2291 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein K06889 K06889; uncharacterized protein D Pmen_3365 Hydrolase of the alpha/beta superfamily-like protein K06889 K06889; uncharacterized protein D Pmen_1252 Hydrolase of the alpha/beta superfamily-like protein K06889 K06889; uncharacterized protein D Pmen_0126 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein K06889 K06889; uncharacterized protein D Pmen_2898 Ketosteroid isomerase-related protein-like protein K06893 K06893; uncharacterized protein D Pmen_3203 hypothetical protein K06893 K06893; uncharacterized protein D Pmen_1912 protein of unknown function DUF815 K06923 K06923; uncharacterized protein D Pmen_2577 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Pmen_3407 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Pmen_0270 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Pmen_1840 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Pmen_3157 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Pmen_1827 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Pmen_0504 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Pmen_2510 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Pmen_0243 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Pmen_3430 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Pmen_0967 hypothetical protein K06950 K06950; uncharacterized protein D Pmen_2193 ICC-like phosphoesterase-like protein K06953 K06953; uncharacterized protein D Pmen_1068 amine oxidase K06954 K06954; uncharacterized protein D Pmen_2553 acetyltransferase-like protein K06975 K06975; uncharacterized protein D Pmen_1091 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein D Pmen_2013 Glyoxalase/bleomycin resistance protein/dioxygenase K06991 K06991; uncharacterized protein D Pmen_2536 peptidase C39, bacteriocin processing K06992 K06992; uncharacterized protein D Pmen_3163 protein of unknown function DUF861, cupin_3 K06995 K06995; uncharacterized protein D Pmen_0236 protein of unknown function DUF861, cupin_3 K06995 K06995; uncharacterized protein D Pmen_1898 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein D Pmen_0605 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein D Pmen_2935 Patched family protein K07003 K07003; uncharacterized protein D Pmen_3223 Oxidoreductase FAD-binding domain protein K07006 K07006; uncharacterized protein D Pmen_2101 sulfatase K07014 K07014; uncharacterized protein D Pmen_0893 hydrolase of the alpha/beta superfamily-like protein K07018 K07018; uncharacterized protein D Pmen_4180 alpha/beta hydrolase fold protein K07019 K07019; uncharacterized protein D Pmen_2598 hydrolase of the alpha/beta-hydrolase fold-like protein K07020 K07020; uncharacterized protein D Pmen_1001 conserved hypothetical protein K07028 K07028; uncharacterized protein D Pmen_1708 Glyoxalase/bleomycin resistance protein/dioxygenase K07032 K07032; uncharacterized protein D Pmen_1811 yecA family protein K07039 K07039; uncharacterized protein D Pmen_3165 yecA family protein K07039 K07039; uncharacterized protein D Pmen_2618 metal-dependent hydrolase-like protein K07044 K07044; uncharacterized protein D Pmen_3654 metal-dependent hydrolase-like protein K07044 K07044; uncharacterized protein D Pmen_3653 metal-dependent hydrolase-like protein K07044 K07044; uncharacterized protein D Pmen_0828 protein of unknown function, zinc metallopeptidase putative K07054 K07054; uncharacterized protein D Pmen_4462 nucleic-acid-binding protein containing a Zn-ribbon domain-like protein K07070 K07070; uncharacterized protein D Pmen_1076 NAD-dependent epimerase/dehydratase K07071 K07071; uncharacterized protein D Pmen_1192 nucleotidyltransferase-like protein K07074 K07074; uncharacterized protein D Pmen_4446 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein D Pmen_4560 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein D Pmen_2949 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein D Pmen_3547 TRAP-type uncharacterized transport system periplasmic component-like protein K07080 K07080; uncharacterized protein D Pmen_4477 protein of unknown function DUF897 K07086 K07086; uncharacterized protein D Pmen_2072 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pmen_2132 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pmen_3174 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pmen_3839 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pmen_4215 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pmen_2408 protein of unknown function DUF839 K07093 K07093; uncharacterized protein D Pmen_4059 protein of unknown function DUF839 K07093 K07093; uncharacterized protein D Pmen_4206 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D Pmen_4336 protein of unknown function DUF395, YeeE/YedE K07112 K07112; uncharacterized protein D Pmen_0334 protein of unknown function DUF395, YeeE/YedE K07112 K07112; uncharacterized protein D Pmen_0335 protein of unknown function DUF395, YeeE/YedE K07112 K07112; uncharacterized protein D Pmen_0809 3-beta hydroxysteroid dehydrogenase/isomerase K07118 K07118; uncharacterized protein D Pmen_1454 putative ammonia monooxygenase K07120 K07120; uncharacterized protein D Pmen_0911 LppC family lipoprotein K07121 K07121; uncharacterized protein D Pmen_3938 short-chain dehydrogenase/reductase SDR K07124 K07124; uncharacterized protein D Pmen_1100 short-chain dehydrogenase/reductase SDR K07124 K07124; uncharacterized protein D Pmen_3776 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Pmen_2652 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Pmen_1337 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Pmen_1450 FAD dependent oxidoreductase K07137 K07137; uncharacterized protein D Pmen_1573 MOSC domain containing protein K07140 K07140; MOSC domain-containing protein D Pmen_3807 peptidase S16, lon domain protein K07157 K07157; uncharacterized protein D Pmen_4540 protein of unknown function DUF37 K08998 K08998; uncharacterized protein D Pmen_4621 protein of unknown function DUF37 K08998 K08998; uncharacterized protein D Pmen_4153 protein of unknown function DUF167 K09131 K09131; uncharacterized protein D Pmen_3793 protein of unknown function DUF493 K09158 K09158; uncharacterized protein D Pmen_1776 protein of unknown function UPF0153 K09160 K09160; uncharacterized protein D Pmen_1067 protein of unknown function DUF1365 K09701 K09701; uncharacterized protein D Pmen_3282 protein of unknown function DUF985 K09705 K09705; uncharacterized protein D Pmen_0294 protein of unknown function DUF188 K09768 K09768; uncharacterized protein D Pmen_1833 YCII-related protein K09780 K09780; uncharacterized protein D Pmen_0659 protein of unknown function DUF808 K09781 K09781; uncharacterized protein D Pmen_4018 protein of unknown function DUF444 K09786 K09786; uncharacterized protein D Pmen_1810 protein of unknown function DUF454 K09790 K09790; uncharacterized protein D Pmen_4506 protein of unknown function DUF454 K09790 K09790; uncharacterized protein D Pmen_1615 protein of unknown function DUF343 K09791 K09791; uncharacterized protein D Pmen_2612 conserved hypothetical protein K09792 K09792; uncharacterized protein D Pmen_0753 protein of unknown function DUF465 K09794 K09794; uncharacterized protein D Pmen_0754 protein of unknown function DUF465 K09794 K09794; uncharacterized protein D Pmen_3629 protein of unknown function UPF0125 K09801 K09801; uncharacterized protein D Pmen_1602 protein of unknown function DUF539 K05952 K05952; uncharacterized protein D Pmen_3187 transcriptional regulator, GntR family K00243 K00243; uncharacterized protein D Pmen_2020 conserved hypothetical protein K09822 K09822; uncharacterized protein D Pmen_0600 protein of unknown function DUF330 K09857 K09857; uncharacterized protein D Pmen_1032 protein of unknown function DUF328 K09861 K09861; uncharacterized protein D Pmen_0771 protein of unknown function DUF329 K09862 K09862; uncharacterized protein D Pmen_0324 protein of unknown function UPF0149 K09895 K09895; uncharacterized protein D Pmen_2959 protein of unknown function UPF0270 K09898 K09898; uncharacterized protein D Pmen_1774 protein of unknown function DUF709 K09902 K09902; uncharacterized protein D Pmen_0892 protein of unknown function DUF1043 K09908 K09908; uncharacterized protein D Pmen_1737 conserved hypothetical protein K09912 K09912; uncharacterized protein D Pmen_2627 protein of unknown function DUF480 K09915 K09915; uncharacterized protein D Pmen_2941 protein of unknown function DUF1315 K09916 K09916; uncharacterized protein D Pmen_3241 YebG family protein K09918 K09918; uncharacterized protein D Pmen_1249 protein of unknown function DUF482 K09919 K09919; uncharacterized protein D Pmen_0607 protein of unknown function DUF1249 K09920 K09920; uncharacterized protein D Pmen_0265 protein of unknown function DUF484 K09921 K09921; uncharacterized protein D Pmen_3007 protein of unknown function DUF469 K09923 K09923; uncharacterized protein D Pmen_1691 conserved hypothetical protein K09924 K09924; uncharacterized protein D Pmen_2609 conserved hypothetical protein K09926 K09926; uncharacterized protein D Pmen_2137 protein of unknown function DUF1006 K09927 K09927; uncharacterized protein D Pmen_1610 conserved hypothetical protein K09928 K09928; uncharacterized protein D Pmen_1555 conserved hypothetical protein K09929 K09929; uncharacterized protein D Pmen_1554 protein of unknown function DUF692 K09930 K09930; uncharacterized protein D Pmen_2222 protein of unknown function DUF692 K09930 K09930; uncharacterized protein D Pmen_3287 Antibiotic biosynthesis monooxygenase K09932 K09932; uncharacterized protein D Pmen_2663 conserved hypothetical protein K09932 K09932; uncharacterized protein D Pmen_0639 hypothetical protein K09937 K09937; uncharacterized protein D Pmen_2995 conserved hypothetical protein K09938 K09938; uncharacterized protein D Pmen_4385 conserved hypothetical protein K09940 K09940; uncharacterized protein D Pmen_3298 uncharacterized conserved protein UCP028101 K09947 K09947; uncharacterized protein D Pmen_3291 protein of unknown function DUF1244 K09948 K09948; uncharacterized protein D Pmen_3866 conserved hypothetical protein K09950 K09950; uncharacterized protein D Pmen_0115 conserved hypothetical protein K09950 K09950; uncharacterized protein D Pmen_2623 conserved hypothetical protein K09954 K09954; uncharacterized protein D Pmen_0808 conserved hypothetical protein K09956 K09956; uncharacterized protein D Pmen_0800 conserved hypothetical protein K09956 K09956; uncharacterized protein D Pmen_3293 protein of unknown function DUF1089 K09957 K09957; uncharacterized protein D Pmen_1115 conserved hypothetical protein K09964 K09964; uncharacterized protein D Pmen_1359 conserved hypothetical protein K09967 K09967; uncharacterized protein D Pmen_1360 conserved hypothetical protein K09967 K09967; uncharacterized protein D Pmen_2518 protein of unknown function DUF1287 K09974 K09974; uncharacterized protein D Pmen_4074 protein of unknown function DUF886 K09975 K09975; uncharacterized protein D Pmen_2945 conserved hypothetical protein K09977 K09977; uncharacterized protein D Pmen_3338 uncharacterized conserved protein UCP025560 K09978 K09978; uncharacterized protein D Pmen_3390 conserved hypothetical protein K09980 K09980; uncharacterized protein D Pmen_2163 protein of unknown function DUF1272 K09984 K09984; uncharacterized protein D Pmen_1642 protein of unknown function DUF1285 K09986 K09986; uncharacterized protein D Pmen_1787 conserved hypothetical protein K09989 K09989; uncharacterized protein D Pmen_2242 protein of unknown function DUF156 K07807 K07807; uncharacterized protein D Pmen_0351 protein of unknown function DUF47 K07220 K07220; uncharacterized protein D Pmen_3297 periplasmic lipoprotein-like protein K07338 K07338; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 29, 2024