+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Xylanibacter ruminicola

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D PRU_2560 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C PRU_2939 era; GTP-binding protein Era K03595 era; GTPase C PRU_2870 GTP-binding protein, GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C PRU_1068 conserved hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor C PRU_2370 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA C PRU_0247 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB C PRU_2140 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D PRU_1549 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D PRU_1993 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D PRU_1064 conserved hypothetical protein TIGR00046 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D PRU_1653 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D PRU_2325 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D PRU_1869 conserved hypothetical protein TIGR00096 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] C 23S rRNA modification factors D PRU_0727 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D PRU_0904 PUA domain protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D PRU_1805 THUMP domain protein K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D PRU_1562 rlmN; 23S rRNA m2A2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D PRU_1513 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D PRU_2661 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D PRU_0055 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D PRU_2236 ribosomal large subunit pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D PRU_1362 RNA pseudouridine synthase family protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D PRU_0298 RNA pseudouridine synthase family protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C PRU_2926 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C PRU_0752 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C PRU_1028 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C PRU_2560 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C PRU_0682 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] C PRU_0590 conserved hypothetical protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C PRU_2639 ATP-dependent RNA helicase, DEAD box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C PRU_2939 era; GTP-binding protein Era K03595 era; GTPase C PRU_0075 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C PRU_2940 engA; ribosome-associated GTPase EngA K03977 engA; GTPase C PRU_2870 GTP-binding protein, GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-] C PRU_0115 GTP-binding protein K03665 hflX; GTPase B Other maturation factors C PRU_0236 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C PRU_1210 GTP diphosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C PRU_0013 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C PRU_2291 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C PRU_2369 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP C PRU_0043 iojap-like protein K09710 ybeB; ribosome-associated protein C PRU_2148 yfiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor C PRU_2502 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C PRU_2936 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024