+E Transcription factors KO
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Transcription Factors - Rhodopirellula baltica
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D RB3487 melR; melibiose operon regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D RB5308 melR; melibiose operon regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D RB3692 probable Xyls/AraC-type transcriptional activator K07506 K07506; AraC family transcriptional regulator
D RB1606 O-6-methylguanine-DNA methyltransferase (ada) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
C DeoR family
C LacI family
D RB6542 xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RB13139 xylR; xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RB522 xylR; xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RB1454 araC; Xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RB2535 ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RB13165 xylR; xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
C TetR/AcrR family
D RB5111 probable transcription regulator TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D RB4571 conserved hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RB13253 probable tetR-family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RB838 probable transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
C LuxR family
C MarR family
C MerR family
D RB1395 similar to DNA-binding protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D RB8465 fur; probable transcription regulator FurR family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RB13099 fur; probable ferric uptake regulation protein Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
C CRP/FNR family
C Rrf2 family
D RB11077 conserved hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D RB3521 arsR; probable ArsR-family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D RB10060 probable transcription regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D RB8939 probable transcription regulator K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D RB11223 arsR; probable metal-dependent regulatory protein K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D RB11100 putative toxin K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D RB7198 conserved hypothetical protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RB13217 probable beta-lactamase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RB4118 blaI; probable Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RB757 similar to beta-lactamase repressor protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RB5918 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RB9570 hyfR; hydrogenase-4 transcriptional activator K15836 fhlA; formate hydrogenlyase transcriptional activator
D RB2253 probable DNA-binding protein K01926 rex; redox-sensing transcriptional repressor
B Ribbon-helix-helix
C CopG family
C Other families
D RB8262 putA; proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D RB7777 nosR; probable NosR regulatory protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D RB2296 parB; probable chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RB5675 probable transcriptional regulator K07735 algH; putative transcriptional regulator
D RB10007 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D RB5848 dksA; probable DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RB11260 dksA; probable dnaK (dksA-like) supressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RB8049 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D RB9364 rtcR; transcription regulator RtcR K14414 rtcR; transcriptional regulatory protein RtcR
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0