+E Transcription factors KO #

  Transcription Factors - Rhodopirellula baltica

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D RB3487 melR; melibiose operon regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D RB5308 melR; melibiose operon regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D RB3692 probable Xyls/AraC-type transcriptional activator K07506 K07506; AraC family transcriptional regulator D RB1606 O-6-methylguanine-DNA methyltransferase (ada) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family C DeoR family C LacI family D RB6542 xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RB13139 xylR; xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RB522 xylR; xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RB1454 araC; Xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RB2535 ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RB13165 xylR; xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family C TetR/AcrR family D RB5111 probable transcription regulator TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D RB4571 conserved hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D RB13253 probable tetR-family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D RB838 probable transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family C LuxR family C MarR family C MerR family D RB1395 similar to DNA-binding protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D RB8465 fur; probable transcription regulator FurR family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RB13099 fur; probable ferric uptake regulation protein Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family C CRP/FNR family C Rrf2 family D RB11077 conserved hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D RB3521 arsR; probable ArsR-family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D RB10060 probable transcription regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D RB8939 probable transcription regulator K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D RB11223 arsR; probable metal-dependent regulatory protein K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family C PadR family C Other families D RB11100 putative toxin K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D RB7198 conserved hypothetical protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D RB13217 probable beta-lactamase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D RB4118 blaI; probable Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D RB757 similar to beta-lactamase repressor protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D RB5918 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D RB9570 hyfR; hydrogenase-4 transcriptional activator K15836 fhlA; formate hydrogenlyase transcriptional activator D RB2253 probable DNA-binding protein K01926 rex; redox-sensing transcriptional repressor B Ribbon-helix-helix C CopG family C Other families D RB8262 putA; proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D RB7777 nosR; probable NosR regulatory protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D RB2296 parB; probable chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RB5675 probable transcriptional regulator K07735 algH; putative transcriptional regulator D RB10007 conserved hypothetical protein K07735 algH; putative transcriptional regulator D RB5848 dksA; probable DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D RB11260 dksA; probable dnaK (dksA-like) supressor protein K06204 dksA; RNA polymerase-binding transcription factor D RB8049 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR D RB9364 rtcR; transcription regulator RtcR K14414 rtcR; transcriptional regulatory protein RtcR ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0