+E Ribosome biogenesis KO
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Ribosome Biogenesis - Rhodopirellula baltica
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
D RB4426 hypothetical protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D RB4925 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C RB2630 GTP-binding protein OBG K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
D RB4426 hypothetical protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B rRNA transcription factors
C RB5848 dksA; probable DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C RB11260 dksA; probable dnaK (dksA-like) supressor protein K06204 dksA; RNA polymerase-binding transcription factor
C RB5507 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C RB4611 nusB; probable N utilization substance protein B homolog K03625 nusB; transcription antitermination protein NusB
C RB7898 nusG; transcription antiterminator NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D RB12377 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RB7906 conserved hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RB10359 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RB7945 gidB; probable glucose inhibited division protein B (GidB) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RB8268 conserved hypothetical protein-putative methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
C 23S rRNA modification factors
D RB11756 rrmA; ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D RB6416 conserved hypothetical protein-putative SAM-dependent methyltransferases K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D RB162 SAM dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D RB9478 conserved hypothetical protein-putative methyltransferase K25136 rlmK; 23S rRNA (guanine2069-N7)-methyltransferase [EC:2.1.1.264]
D RB9256 conserved hypothetical protein-putative SAM-depedent methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D RB12963 conserved hypothetical protein-putative Fe-S-oxidoreductase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D RB6963 conserved hypothetical protein-putative Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D RB2141 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RB3174 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RB12885 rluD; ribosomal large subunit pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RB6482 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RB3266 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C RB5015 rimI; probable ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C RB7299 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C RB10880 conserved hypothetical protein-putative 2-methylthioadenine synthetase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
B rRNA processing factors
C RB4925 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C RB8595 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C RB8076 conserved hypothetical protein-putative an endonuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C RB8189 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C RB7317 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C RB2968 conserved hypothetical protein-putative GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C RB5619 probable GTP-binding protein K03977 engA; GTPase
C RB2630 GTP-binding protein OBG K03979 obgE; GTPase [EC:3.6.5.-]
C RB5824 predicted GTPase K14540 rbgA; ribosome biogenesis GTPase A
C RB7008 hflX; GTP-binding protein Hflx K03665 hflX; GTPase
B Other maturation factors
C RB6670 putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C RB5503 rbfA; probable ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C RB2434 conserved hypothetical protein-putative RNA-binding protein K14761 rlbA; ribosome-associated protein
C RB5749 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
C RB4579 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
C RB8580 probable sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C RB5186 probable GTP-binding protein K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024