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Transcription Machinery - Rhodopirellula baltica
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E RB12626 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E RB1964 rpoA; probable DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E RB7070 rpoA; probable DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E RB5414 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E RB5416 rpoC; DNA-directed RNA polymerase beta chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E RB7088 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E RB6347 transcription initiation factor sigma 70 K03086 rpoD; RNA polymerase primary sigma factor
E RB3727 rpoS; RNA polymerase sigma factor rpoS K03086 rpoD; RNA polymerase primary sigma factor
E RB10339 rpdD; RNA polymerase sigma factor rpoD K03086 rpoD; RNA polymerase primary sigma factor
E RB1392 rpoD; probable RNA polymerase sigma 70 K03086 rpoD; RNA polymerase primary sigma factor
E RB6823 transcription initiation factor sigma 70 K03086 rpoD; RNA polymerase primary sigma factor
E RB6078 RNA polymerase sigma-70 factor (ECF subfamily) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB2303 rpsH; RNA polymerase sigma-H factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB13241 probable ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB8492 sigW; RNA polymerase sigma factor sigW K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB555 probable sigma-70 factor, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB1790 sigW; probable RNA polymerase sigma factor sigW K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB6643 probable RNA polymerase ECF-type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB12372 RNA polymerase ECF-type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB5968 similar to RNA polymerase sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB2840 similar to RNA polymerase sigma factor nccH K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB5420 hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB6517 probable ECF sigma factor (sigma-70 family) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB10049 probable alternative sigma factor AlgU K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB912 similar to ECF-family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB637 probable sigma-70 factor, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB4241 probable RNA polymerase sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB4859 probable RNA polymerase sigma-70 factor, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB5081 probable ECF-like sigma factor SigE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB6034 probable RNA polymerase sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB6961 probable RNA polymerase sigma-E factor (ECF subfamily of sigma-70) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB7797 nccH; probable RNA polymerase sigma factor nccH K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB8701 sigH; probable sigma factor SigH K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB8816 sigW; RNA polymerase sigma factor sigW K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB9437 sigY; probable RNA polymerase sigma factor Y K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB9561 sigE; probable extracytoplasmic function alternative sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB9728 rfaY; probable RNA polymerase sigma factor rfaY K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB9852 cnrH; probable RNA polymerase sigma factor cnrH K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB10120 rpoE; probable RNA polymerase sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB10993 sigG; probable RNA-polymerase sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB11135 rpoE; probable RNA polymerase sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB11473 hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB12730 probable sigma-70 factor (ECF subfamily) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RB6780 sigma-70 factor K03093 sigI; RNA polymerase sigma-I factor
E RB6491 RNA polymerase subunit sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
E RB8316 whiG; RNA polymerase sigma factor whiG K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E RB5507 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
E RB4611 nusB; probable N utilization substance protein B homolog K03625 nusB; transcription antitermination protein NusB
E RB7898 nusG; transcription antiterminator NusG K02601 nusG; transcription termination/antitermination protein NusG
E RB7190 conserved hypothetical protein-putative regulatory protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E RB12506 probable anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) K04749 rsbV; anti-sigma B factor antagonist
D Transcription elongation factors
E RB5848 dksA; probable DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
E RB11260 dksA; probable dnaK (dksA-like) supressor protein K06204 dksA; RNA polymerase-binding transcription factor
E RB2780 greA; transcription elongation factor greA K03624 greA; transcription elongation factor GreA
D Transcription termination factor
E RB4997 rho; probable transcription termination factor K03628 rho; transcription termination factor Rho
E RB8777 rho; probable transcription termination factor rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024