+F Repair protein KO #

  DNA Repair and Recombination Proteins - Rhodopirellula baltica

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D RB8498 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E RB8205 mpg; N-methylpurine-DNA glycosirase (MPG) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E RB10395 smuG1; single-strand selective monofunctional uracil DNA glycosylase K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-] E RB301 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RB5097 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D RB2152 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D RB1606 O-6-methylguanine-DNA methyltransferase (ada) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D RB8498 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D RB8082 conserved hypothetical protein-putative a deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E RB10395 smuG1; single-strand selective monofunctional uracil DNA glycosylase K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-] E RB3915 dpoL; putative DNA polymerase related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RB5620 DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RB4998 alkA; DNA-3-methyladenine glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E RB8205 mpg; N-methylpurine-DNA glycosirase (MPG) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E RB301 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RB5226 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E RB7569 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E RB12746 mutM; probable formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E RB5097 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E RB8161 exoA; exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RB11419 nfi; probable endonuclease V (deoxyinosine 3endonuclease) K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E RB8726 recJ; single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E RB10711 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E RB12799 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E RB10876 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E RB7959 uvrA; exinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E RB5606 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E RB8397 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E RB7010 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E RB7201 exinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E RB6767 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RB12363 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RB12799 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E RB10711 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F RB5414 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F RB5416 rpoC; DNA-directed RNA polymerase beta chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F RB12626 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F RB1964 rpoA; probable DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F RB7070 rpoA; probable DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F RB7088 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F RB6201 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E RB7237 mutS; DNA mismatch repair protein MUTS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E RB7883 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E RB3598 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E RB2146 xseB; similar to exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E RB3103 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E RB10108 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E RB2871 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E RB10816 holB; DNA polymerase III, tau/gamma subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E RB12116 dnaQ; probable DNA polymerase III polC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RB6494 dnaX; DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E RB10711 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E RB6767 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RB12363 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RB9917 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E RB11863 recA; RecA protein (Recombinase A) K03553 recA; recombination protein RecA E RB4610 ruvA; probable holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E RB6959 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RB4673 ruvC; crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E RB8418 priA; primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E RB11863 recA; RecA protein (Recombinase A) K03553 recA; recombination protein RecA E RB1046 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E RB8726 recJ; single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E RB4591 recO; probable DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) E RB6492 recR; recombinant protein RecR K06187 recR; recombination protein RecR E RB5401 hypothetical protein K03554 rdgC; recombination associated protein RdgC E RB4610 ruvA; probable holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E RB6959 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RB4673 ruvC; crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F RB3465 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F RB8841 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F RB9109 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F RB3272 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F RB3466 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F RB7957 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F RB3281 hup; probable DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F RB8726 recJ; single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F RB4591 recO; probable DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) F RB6492 recR; recombinant protein RecR K06187 recR; recombination protein RecR F RB10711 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F RB5969 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F RB9374 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F RB10487 recQ; recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F RB13225 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F RB6483 recQ; DNA-dependent ATPase DNA helicase (RecQ) K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F RB10876 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F RB7959 uvrA; exinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F RB5606 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F RB8397 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F RB4757 hypothetical protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D RB4224 dinP; DNA-damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D RB11863 recA; RecA protein (Recombinase A) K03553 recA; recombination protein RecA D RB7437 lexA; LexA protein K01356 lexA; repressor LexA [EC:3.4.21.88] D RB11894 conserved hypothetical protein K14160 imuA; protein ImuA D RB11891 conserved hypothetical protein K14161 imuB; protein ImuB D RB1262 dnaE; DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D RB9917 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase D RB1485 polB; DNA polymerase beta family K02347 polX; DNA polymerase (family X) D RB4749 POL4; probable DNA polymerase family X K02347 polX; DNA polymerase (family X) C DNA helicases D RB8062 yoaA; ATP-dependent helicase, DinG family K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D RB1577 helX; putative ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D RB2152 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RB12762 nrdA; ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D RB8284 conserved hypothetical protein-putative a phopsphoesterase or an exonuclease K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024